Wall clock time and date at job start Tue Mar 31 2020 11:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99904 * 2 1 4 4 C 1.39711 * 119.99867 * 179.97438 * 2 1 3 5 5 C 1.39015 * 120.00514 * 359.97438 * 4 2 1 6 6 C 1.38208 * 120.22314 * 179.97438 * 5 4 2 7 7 C 1.38029 * 120.22568 * 0.02562 * 6 5 4 8 8 C 1.39577 * 120.00115 * 359.95875 * 7 6 5 9 9 C 1.47872 * 120.10594 * 179.97438 * 8 7 6 10 10 O 1.21551 * 119.99691 * 179.97438 * 9 8 7 11 11 N 1.34770 * 120.00114 * 359.97438 * 9 8 7 12 12 C 1.46500 * 120.00218 * 180.02562 * 11 9 8 13 13 H 1.09003 * 115.51314 * 350.57427 * 12 11 9 14 14 C 1.52999 * 117.44394 * 205.16602 * 12 11 9 15 15 H 1.09001 * 119.53720 * 4.15709 * 14 12 11 16 16 C 1.54383 * 118.12282 * 159.24998 * 14 12 11 17 17 N 1.51835 * 102.86441 * 88.01991 * 16 14 12 18 18 C 1.36937 * 127.61040 * 140.54045 * 17 16 14 19 19 H 1.07992 * 120.00108 * 194.65049 * 18 17 16 20 20 C 1.38816 * 119.99920 * 14.65716 * 18 17 16 21 21 N 1.31621 * 120.00039 * 9.00981 * 20 18 17 22 22 Si 1.86801 * 119.99828 * 189.01281 * 20 18 17 23 23 H 1.48496 * 109.47409 * 60.00174 * 22 20 18 24 24 H 1.48502 * 109.46891 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47005 * 299.99563 * 22 20 18 26 26 C 1.48145 * 104.54951 * 320.27194 * 17 16 14 27 27 C 1.52998 * 117.40865 * 135.93828 * 12 11 9 28 28 H 1.08998 * 119.53837 * 355.89390 * 27 12 11 29 29 C 1.38647 * 120.00261 * 180.23066 * 4 2 1 30 30 H 1.09007 * 109.46837 * 240.00121 * 1 2 3 31 31 H 1.08990 * 109.46856 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47054 * 120.00078 * 1 2 3 33 33 H 1.08997 * 109.47251 * 269.99522 * 3 2 1 34 34 H 1.08999 * 109.47507 * 29.99722 * 3 2 1 35 35 H 1.09009 * 109.46816 * 150.00065 * 3 2 1 36 36 H 1.08003 * 119.89099 * 359.97438 * 5 4 2 37 37 H 1.07997 * 119.88847 * 180.02562 * 6 5 4 38 38 H 1.07995 * 119.99720 * 179.97438 * 7 6 5 39 39 H 0.97000 * 120.00140 * 359.97438 * 11 9 8 40 40 H 1.09002 * 110.40621 * 205.97393 * 16 14 12 41 41 H 1.08996 * 110.40920 * 328.41146 * 16 14 12 42 42 H 0.96999 * 119.99726 * 180.02562 * 21 20 18 43 43 H 1.08995 * 110.40815 * 281.07168 * 26 17 16 44 44 H 1.09002 * 110.40640 * 158.64578 * 26 17 16 45 45 H 1.07994 * 120.11103 * 0.02562 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1636 -1.2099 0.0005 5 6 1.4686 -2.4139 0.0016 6 6 2.1550 -3.6135 0.0016 7 6 3.5353 -3.6242 0.0011 8 6 4.2425 -2.4209 -0.0003 9 6 5.7212 -2.4297 -0.0003 10 8 6.3352 -1.3806 -0.0020 11 7 6.3882 -3.6008 0.0016 12 6 7.8531 -3.6095 0.0021 13 1 8.3285 -2.6421 -0.1601 14 6 8.5512 -4.8434 -0.5733 15 1 7.9549 -5.6374 -1.0228 16 6 10.0176 -4.7010 -1.0346 17 7 10.8006 -4.9911 0.2335 18 6 11.9630 -5.7050 0.3531 19 1 12.2937 -6.0395 1.3252 20 6 12.7165 -5.9985 -0.7753 21 7 12.4141 -5.4453 -1.9307 22 14 14.1595 -7.1785 -0.6538 23 1 13.6773 -8.5041 -0.1897 24 1 14.7953 -7.3219 -1.9881 25 1 15.1535 -6.6470 0.3130 26 6 10.0292 -4.3240 1.3080 27 6 8.5513 -4.5884 0.9483 28 1 7.9551 -5.1923 1.6323 29 6 3.5500 -1.2100 0.0054 30 1 -0.3633 -0.5139 0.8901 31 1 -0.3633 1.0276 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 2.3793 1.5834 -1.0276 34 1 1.6085 2.0284 0.5138 35 1 3.1500 1.1383 0.5139 36 1 0.3885 -2.4119 0.0025 37 1 1.6096 -4.5456 0.0020 38 1 4.0679 -4.5636 0.0015 39 1 5.8982 -4.4379 0.0033 40 1 10.2476 -5.4390 -1.8031 41 1 10.2029 -3.6934 -1.4064 42 1 12.9404 -5.6507 -2.7192 43 1 10.2333 -3.2533 1.3138 44 1 10.2690 -4.7627 2.2766 45 1 4.0919 -0.2759 0.0091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962413564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:56 Heat of formation + Delta-G solvation = 71.596329 kcal Electronic energy + Delta-G solvation = -25088.254129 eV Core-core repulsion = 21494.043288 eV Total energy + Delta-G solvation = -3594.210841 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.37650 -39.22992 -38.06292 -36.32243 -34.37062 -32.67975 -31.45813 -30.53284 -29.81811 -28.55996 -27.10877 -25.71231 -25.09661 -23.83020 -21.65176 -21.54418 -20.41995 -19.93610 -19.17766 -18.16368 -16.84709 -16.50280 -16.24075 -15.87573 -15.63448 -15.43791 -14.72961 -14.64622 -14.40084 -13.99110 -13.86897 -13.54144 -13.19075 -13.01967 -12.74488 -12.66071 -12.61516 -12.42638 -12.16577 -11.84680 -11.49450 -11.43116 -11.27702 -10.98364 -10.79193 -10.41747 -10.19528 -10.16504 -10.13211 -9.86249 -9.64306 -9.17178 -9.16146 -8.71535 -8.29587 -7.62055 -6.85154 -5.75974 -3.09064 0.76753 1.31778 2.74077 2.87710 3.17694 3.41475 3.45587 3.46882 3.78528 4.36912 4.49262 4.55134 4.58220 4.63411 4.84190 4.90453 4.98655 5.01496 5.18698 5.21916 5.25341 5.31009 5.36785 5.40022 5.41601 5.43258 5.58588 5.66372 5.82342 5.92349 5.94499 6.15511 6.19694 6.24402 6.26720 6.46522 6.56444 6.72292 6.84646 6.88919 6.92678 7.13634 7.33538 7.54035 7.61902 7.72408 8.17634 8.30197 9.09198 9.75814 10.52782 11.38968 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.038243 B = 0.002163 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.982634 B =12942.000185 C =13228.607321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.639 5.639 3 C 0.090 3.910 4 C 0.204 3.796 5 C -0.174 4.174 6 C -0.079 4.079 7 C -0.144 4.144 8 C -0.082 4.082 9 C 0.559 3.441 10 O -0.536 6.536 11 N -0.691 5.691 12 C 0.095 3.905 13 H 0.133 0.867 14 C -0.177 4.177 15 H 0.102 0.898 16 C 0.185 3.815 17 N -0.599 5.599 18 C -0.224 4.224 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.917 5.917 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.158 3.842 27 C -0.182 4.182 28 H 0.103 0.897 29 C -0.137 4.137 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.399 0.601 40 H 0.092 0.908 41 H 0.032 0.968 42 H 0.255 0.745 43 H 0.026 0.974 44 H 0.052 0.948 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.895 7.764 3.503 28.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.352 5.352 3 C -0.053 4.053 4 C 0.103 3.897 5 C -0.197 4.197 6 C -0.098 4.098 7 C -0.165 4.165 8 C -0.086 4.086 9 C 0.346 3.654 10 O -0.413 6.413 11 N -0.339 5.339 12 C -0.011 4.011 13 H 0.150 0.850 14 C -0.199 4.199 15 H 0.120 0.880 16 C 0.061 3.939 17 N -0.323 5.323 18 C -0.352 4.352 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.564 5.564 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.032 3.968 27 C -0.204 4.204 28 H 0.121 0.879 29 C -0.160 4.160 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.234 0.766 40 H 0.111 0.889 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -26.303 8.597 3.366 27.876 hybrid contribution 0.326 -1.125 0.021 1.172 sum -25.977 7.472 3.387 27.241 Atomic orbital electron populations 1.21592 0.79415 1.02473 1.01119 1.46310 1.04949 1.03122 1.80786 1.21721 0.97539 0.84583 1.01471 1.17686 0.90828 0.85961 0.95247 1.20794 0.99726 0.91043 1.08151 1.20814 0.93768 0.97464 0.97748 1.21081 0.94474 0.96834 1.04124 1.19697 0.92485 0.93877 1.02524 1.18259 0.86996 0.83810 0.76354 1.90763 1.69463 1.31523 1.49601 1.45302 1.06529 1.08235 1.73877 1.21896 0.78118 0.97227 1.03843 0.84990 1.24595 1.00343 0.97988 0.96935 0.88007 1.21709 0.82113 0.99846 0.90272 1.46065 1.24891 1.59920 1.01456 1.18967 0.96633 1.25630 0.94013 0.90585 1.24873 0.98684 1.00722 0.96178 1.69873 1.41677 1.45279 0.99541 0.86189 0.82019 0.80817 0.76667 1.21157 1.21588 1.21048 1.21058 0.87199 0.95616 0.92952 1.24388 0.98834 1.03283 0.93846 0.87887 1.20770 0.91729 0.98415 1.05077 0.92835 0.90847 0.92801 0.93180 0.91477 0.90928 0.85872 0.85490 0.85887 0.76590 0.88930 0.94959 0.93533 0.95596 0.92995 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.51 9.40 59.85 0.56 1.08 16 2 N -0.64 -5.26 3.41 -187.59 -0.64 -5.90 16 3 C 0.09 0.62 10.16 59.85 0.61 1.23 16 4 C 0.20 2.08 6.55 -83.83 -0.55 1.53 16 5 C -0.17 -1.54 9.31 -39.30 -0.37 -1.90 16 6 C -0.08 -0.68 10.02 -39.67 -0.40 -1.08 16 7 C -0.14 -1.46 9.54 -39.16 -0.37 -1.83 16 8 C -0.08 -1.04 5.87 -104.99 -0.62 -1.66 16 9 C 0.56 8.68 7.77 -12.32 -0.10 8.58 16 10 O -0.54 -10.24 15.91 5.32 0.08 -10.15 16 11 N -0.69 -9.97 5.51 -54.74 -0.30 -10.27 16 12 C 0.09 1.66 5.97 -67.93 -0.41 1.25 16 13 H 0.13 2.60 7.40 -51.93 -0.38 2.22 16 14 C -0.18 -3.39 6.96 -89.22 -0.62 -4.01 16 15 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 16 C 0.19 4.49 5.92 -0.29 0.00 4.48 16 17 N -0.60 -15.54 3.45 -165.71 -0.57 -16.11 16 18 C -0.22 -6.30 10.36 -15.06 -0.16 -6.45 16 19 H 0.08 2.06 7.84 -52.49 -0.41 1.64 16 20 C -0.01 -0.22 5.42 -17.43 -0.09 -0.31 16 21 N -0.92 -27.04 10.82 55.49 0.60 -26.44 16 22 Si 0.91 22.09 29.56 -169.99 -5.03 17.06 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.16 3.42 7.05 -2.41 -0.02 3.40 16 27 C -0.18 -3.32 7.06 -89.22 -0.63 -3.95 16 28 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 29 C -0.14 -1.66 8.75 -38.96 -0.34 -2.00 16 30 H 0.05 0.26 7.94 -51.93 -0.41 -0.15 16 31 H 0.07 0.27 7.79 -51.93 -0.40 -0.14 16 32 H 0.05 0.26 7.95 -51.93 -0.41 -0.15 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.33 7.92 -51.93 -0.41 -0.08 16 35 H 0.07 0.56 6.18 -51.92 -0.32 0.24 16 36 H 0.12 0.82 6.71 -52.48 -0.35 0.47 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.12 1.01 6.40 -52.49 -0.34 0.67 16 39 H 0.40 4.59 6.86 -40.82 -0.28 4.31 16 40 H 0.09 2.47 6.56 -51.93 -0.34 2.13 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.14 1.71 5.72 -52.49 -0.30 1.41 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -33.50 366.61 -10.28 -43.79 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.46 Total: 4.13 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -3.49 Total: -1.64 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.91 Total: -58.71 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.50 -10.28 -43.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962413564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.384 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds