Wall clock time and date at job start Tue Mar 31 2020 11:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36929 * 119.99918 * 2 1 4 4 H 1.07999 * 120.00350 * 158.65403 * 3 2 1 5 5 C 1.38810 * 120.00189 * 338.37722 * 3 2 1 6 6 N 1.31626 * 119.99833 * 347.96932 * 5 3 2 7 7 Si 1.86800 * 120.00380 * 167.96565 * 5 3 2 8 8 H 1.48502 * 109.46763 * 94.97523 * 7 5 3 9 9 H 1.48498 * 109.47156 * 214.97281 * 7 5 3 10 10 H 1.48495 * 109.47200 * 334.97539 * 7 5 3 11 11 C 1.46500 * 119.99925 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.88615 * 176.11719 * 11 2 1 13 13 C 1.55156 * 111.01030 * 300.00363 * 11 2 1 14 14 C 1.54325 * 102.94050 * 153.57436 * 13 11 2 15 15 N 1.47013 * 107.27446 * 337.80640 * 14 13 11 16 16 C 1.34777 * 125.64946 * 178.91552 * 15 14 13 17 17 O 1.21550 * 120.00022 * 185.24943 * 16 15 14 18 18 C 1.47844 * 119.99970 * 5.25653 * 16 15 14 19 19 C 1.40021 * 120.55520 * 314.94973 * 18 16 15 20 20 C 1.38357 * 118.28851 * 180.02562 * 19 18 16 21 21 C 1.38360 * 119.30097 * 359.97438 * 20 19 18 22 22 N 1.31924 * 121.07799 * 359.97438 * 21 20 19 23 23 C 1.31693 * 121.88152 * 359.74013 * 22 21 20 24 24 C 1.50694 * 119.71896 * 180.26837 * 23 22 21 25 25 C 1.53006 * 117.49756 * 7.24856 * 24 23 22 26 26 C 1.53005 * 117.50108 * 298.59145 * 24 23 22 27 27 C 1.47423 * 108.70599 * 358.94304 * 15 14 13 28 28 H 1.08997 * 109.47068 * 84.90242 * 1 2 3 29 29 H 1.09012 * 109.47001 * 204.90116 * 1 2 3 30 30 H 1.08995 * 109.47654 * 324.89786 * 1 2 3 31 31 H 0.96997 * 119.99878 * 179.97438 * 6 5 3 32 32 H 1.08996 * 110.72024 * 271.94080 * 13 11 2 33 33 H 1.08997 * 110.71793 * 35.03419 * 13 11 2 34 34 H 1.09000 * 109.87943 * 97.23284 * 14 13 11 35 35 H 1.09001 * 109.87959 * 218.23421 * 14 13 11 36 36 H 1.08002 * 120.86027 * 359.97438 * 19 18 16 37 37 H 1.08002 * 120.34843 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.45560 * 180.02562 * 21 20 19 39 39 H 1.09001 * 115.55319 * 152.91611 * 24 23 22 40 40 H 1.09003 * 117.49696 * 359.97438 * 25 24 23 41 41 H 1.09006 * 117.49797 * 145.02077 * 25 24 23 42 42 H 1.08999 * 117.49541 * 214.97678 * 26 24 23 43 43 H 1.08996 * 117.49532 * 359.97438 * 26 24 23 44 44 H 1.09000 * 110.36656 * 265.29089 * 27 15 14 45 45 H 1.09004 * 110.37156 * 142.96214 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1740 1.2180 0.3404 5 6 1.5289 2.3457 -0.4430 6 7 0.3788 2.2748 -1.0793 7 14 2.3254 4.0072 -0.1360 8 1 3.1222 4.4014 -1.3255 9 1 1.2713 5.0232 0.1125 10 1 3.2160 3.9178 1.0489 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0973 -0.0685 13 6 1.8484 -2.1121 1.2553 14 6 2.1064 -3.5582 0.7824 15 7 2.0265 -3.5584 -0.6856 16 6 2.2143 -4.6290 -1.4824 17 8 2.2181 -4.4943 -2.6904 18 6 2.4156 -5.9673 -0.8872 19 6 3.2849 -6.1408 0.1968 20 6 3.4385 -7.4136 0.7169 21 6 2.7346 -8.4641 0.1551 22 7 1.9215 -8.2705 -0.8655 23 6 1.7377 -7.0774 -1.3917 24 6 0.7924 -6.9108 -2.5535 25 6 -0.0455 -8.1242 -2.9620 26 6 1.1188 -7.6656 -3.8437 27 6 1.7075 -2.1933 -1.1418 28 1 -0.3633 0.0913 -1.0236 29 1 -0.3634 -0.9322 0.4328 30 1 -0.3634 0.8407 0.5909 31 1 -0.0552 3.0852 -1.3885 32 1 2.5042 -1.8555 2.0871 33 1 0.8034 -1.9750 1.5334 34 1 3.0981 -3.8806 1.0998 35 1 1.3499 -4.2244 1.1972 36 1 3.8223 -5.3028 0.6156 37 1 4.1007 -7.5854 1.5525 38 1 2.8523 -9.4586 0.5594 39 1 0.3329 -5.9270 -2.6485 40 1 0.0874 -9.0429 -2.3908 41 1 -1.0560 -7.9384 -3.3262 42 1 0.8738 -7.1784 -4.7875 43 1 2.0175 -8.2823 -3.8524 44 1 0.6326 -2.0825 -1.2847 45 1 2.2392 -1.9683 -2.0664 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971864217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:20 Heat of formation + Delta-G solvation = 66.381106 kcal Electronic energy + Delta-G solvation = -26345.378233 eV Core-core repulsion = 22750.941243 eV Total energy + Delta-G solvation = -3594.436990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.97027 -39.31929 -37.44237 -36.90393 -34.88806 -32.91594 -31.66142 -31.23423 -29.79777 -27.98202 -26.11777 -25.05424 -24.76348 -23.14900 -22.39755 -22.26600 -20.95835 -19.67888 -19.34388 -17.31352 -17.21099 -17.07550 -16.34039 -16.02655 -15.57263 -15.11923 -14.75164 -14.36567 -14.15618 -13.85354 -13.78585 -13.34235 -13.26470 -12.99324 -12.66025 -12.46556 -12.38762 -12.00655 -11.75121 -11.55280 -11.48383 -10.94767 -10.90678 -10.82844 -10.56433 -10.52689 -10.50329 -10.32976 -10.16055 -10.00149 -9.90451 -9.87520 -9.47685 -9.00996 -8.63893 -8.37629 -6.86979 -5.80033 -3.26943 0.59544 0.95324 2.76210 3.08159 3.34364 3.41108 3.42565 3.44308 3.93134 3.99370 4.30797 4.42405 4.52217 4.52867 4.79706 4.91690 4.93594 5.01666 5.04565 5.13133 5.22224 5.32493 5.40871 5.43363 5.57137 5.62460 5.72761 5.77805 5.79235 5.84547 5.88397 5.95160 6.08277 6.15085 6.25274 6.30872 6.35595 6.46983 6.57672 6.72401 6.81187 7.31892 7.63828 7.66519 7.73242 7.74687 8.24007 8.30827 9.14675 9.76741 10.24604 11.24456 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.003050 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.559777 B = 9179.556722 C = 9862.006645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.289 1.289 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.100 3.900 15 N -0.607 5.607 16 C 0.573 3.427 17 O -0.527 6.527 18 C -0.165 4.165 19 C -0.046 4.046 20 C -0.185 4.185 21 C 0.118 3.882 22 N -0.486 5.486 23 C 0.210 3.790 24 C -0.116 4.116 25 C -0.162 4.162 26 C -0.148 4.148 27 C 0.087 3.913 28 H 0.032 0.968 29 H 0.000 1.000 30 H 0.046 0.954 31 H 0.254 0.746 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.159 0.841 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -20.653 4.437 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.305 5.305 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.023 4.023 15 N -0.340 5.340 16 C 0.360 3.640 17 O -0.404 6.404 18 C -0.170 4.170 19 C -0.072 4.072 20 C -0.204 4.204 21 C -0.040 4.040 22 N -0.194 5.194 23 C 0.072 3.928 24 C -0.135 4.135 25 C -0.199 4.199 26 C -0.186 4.186 27 C -0.037 4.037 28 H 0.050 0.950 29 H 0.019 0.981 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.177 0.823 39 H 0.141 0.859 40 H 0.125 0.875 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.502 -21.142 3.334 21.549 hybrid contribution 0.898 1.682 0.646 2.013 sum 3.400 -19.461 3.980 20.152 Atomic orbital electron populations 1.20825 0.82281 0.95607 0.99669 1.43870 1.01964 0.99807 1.84868 1.19233 0.97664 0.84945 1.37231 0.91117 1.25046 0.97630 0.98644 0.98109 1.70081 1.17685 1.27174 1.39980 0.86200 0.78345 0.83754 0.77979 1.21412 1.21551 1.20421 1.21448 0.96403 0.85748 0.90153 0.90352 1.23245 1.03027 0.92484 1.00675 1.22198 1.00535 0.99330 0.80221 1.48442 1.68736 1.09486 1.07361 1.17664 0.77464 0.82836 0.86064 1.90804 1.50854 1.85247 1.13522 1.20738 1.01944 0.95287 0.99049 1.21947 0.94738 0.98217 0.92321 1.22079 1.02496 0.93344 1.02529 1.22897 0.90638 0.99445 0.90977 1.67426 1.17584 1.23630 1.10781 1.20377 0.92438 0.86926 0.93096 1.20939 1.00878 0.98344 0.93302 1.23005 0.95666 0.98199 1.03043 1.22871 0.99937 1.02161 0.93590 1.23143 1.01152 0.78935 1.00455 0.94992 0.98133 0.93529 0.93597 0.90480 0.90414 0.91806 0.92039 0.83783 0.84161 0.82335 0.85894 0.87524 0.88610 0.88174 0.88855 0.91161 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.78 7.55 59.85 0.45 4.23 16 2 N -0.58 -13.90 2.96 -171.03 -0.51 -14.41 16 3 C -0.26 -6.90 9.63 -15.06 -0.15 -7.04 16 4 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 5 C 0.00 0.12 5.12 -17.43 -0.09 0.03 16 6 N -0.90 -25.73 10.57 55.49 0.59 -25.15 16 7 Si 0.91 21.30 29.57 -169.99 -5.03 16.28 16 8 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 C 0.17 3.33 3.53 -65.78 -0.23 3.10 16 12 H 0.08 1.52 7.95 -51.93 -0.41 1.11 16 13 C -0.15 -2.34 6.50 -24.90 -0.16 -2.50 16 14 C 0.10 1.30 5.66 -3.07 -0.02 1.28 16 15 N -0.61 -9.71 3.33 -171.63 -0.57 -10.28 16 16 C 0.57 9.49 6.75 -12.33 -0.08 9.40 16 17 O -0.53 -10.39 15.63 5.32 0.08 -10.31 16 18 C -0.16 -2.27 5.47 -104.82 -0.57 -2.84 16 19 C -0.05 -0.49 8.66 -38.87 -0.34 -0.83 16 20 C -0.18 -1.56 10.10 -39.49 -0.40 -1.96 16 21 C 0.12 1.08 11.17 -17.47 -0.20 0.89 16 22 N -0.49 -5.88 9.31 -9.15 -0.09 -5.96 16 23 C 0.21 2.86 6.48 -82.18 -0.53 2.32 16 24 C -0.12 -1.56 4.89 -91.77 -0.45 -2.00 16 25 C -0.16 -1.77 10.03 -26.69 -0.27 -2.03 16 26 C -0.15 -1.74 10.24 -26.69 -0.27 -2.01 16 27 C 0.09 1.64 6.49 -2.53 -0.02 1.62 16 28 H 0.03 0.83 7.38 -51.93 -0.38 0.44 16 29 H 0.00 0.00 6.38 -51.92 -0.33 -0.33 16 30 H 0.05 1.18 7.22 -51.93 -0.37 0.81 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.24 6.46 -51.93 -0.34 0.91 16 34 H 0.06 0.68 5.77 -51.93 -0.30 0.38 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.14 1.31 5.72 -52.49 -0.30 1.01 16 37 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 1.84 6.90 -51.93 -0.36 1.49 16 40 H 0.11 1.15 7.56 -51.93 -0.39 0.76 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.07 1.41 6.96 -51.93 -0.36 1.05 16 45 H 0.08 1.57 7.99 -51.93 -0.41 1.15 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -31.22 360.23 -9.88 -41.10 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.47 Total: 1.64 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -3.32 Total: 1.66 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.58 Total: -55.80 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.22 -9.88 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971864217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.481 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds