Wall clock time and date at job start Tue Mar 31 2020 11:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36929 * 119.99918 * 2 1 4 4 H 1.07999 * 120.00350 * 158.65403 * 3 2 1 5 5 C 1.38810 * 120.00189 * 338.37722 * 3 2 1 6 6 N 1.31626 * 119.99833 * 347.96932 * 5 3 2 7 7 Si 1.86800 * 120.00380 * 167.96565 * 5 3 2 8 8 H 1.48502 * 109.46763 * 94.97523 * 7 5 3 9 9 H 1.48498 * 109.47156 * 214.97281 * 7 5 3 10 10 H 1.48495 * 109.47200 * 334.97539 * 7 5 3 11 11 C 1.46500 * 119.99925 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.88615 * 176.11719 * 11 2 1 13 13 C 1.55156 * 111.01030 * 300.00363 * 11 2 1 14 14 C 1.54325 * 102.94050 * 153.57436 * 13 11 2 15 15 N 1.47013 * 107.27446 * 337.80640 * 14 13 11 16 16 C 1.34777 * 125.64946 * 178.91552 * 15 14 13 17 17 O 1.21550 * 120.00022 * 185.24943 * 16 15 14 18 18 C 1.47844 * 119.99970 * 5.25653 * 16 15 14 19 19 C 1.40021 * 120.55520 * 314.94973 * 18 16 15 20 20 C 1.38357 * 118.28851 * 180.02562 * 19 18 16 21 21 C 1.38360 * 119.30097 * 359.97438 * 20 19 18 22 22 N 1.31924 * 121.07799 * 359.97438 * 21 20 19 23 23 C 1.31693 * 121.88152 * 359.74013 * 22 21 20 24 24 C 1.50694 * 119.71896 * 180.26837 * 23 22 21 25 25 C 1.53006 * 117.49756 * 7.24856 * 24 23 22 26 26 C 1.53005 * 117.50108 * 298.59145 * 24 23 22 27 27 C 1.47423 * 108.70599 * 358.94304 * 15 14 13 28 28 H 1.08997 * 109.47068 * 84.90242 * 1 2 3 29 29 H 1.09012 * 109.47001 * 204.90116 * 1 2 3 30 30 H 1.08995 * 109.47654 * 324.89786 * 1 2 3 31 31 H 0.96997 * 119.99878 * 179.97438 * 6 5 3 32 32 H 1.08996 * 110.72024 * 271.94080 * 13 11 2 33 33 H 1.08997 * 110.71793 * 35.03419 * 13 11 2 34 34 H 1.09000 * 109.87943 * 97.23284 * 14 13 11 35 35 H 1.09001 * 109.87959 * 218.23421 * 14 13 11 36 36 H 1.08002 * 120.86027 * 359.97438 * 19 18 16 37 37 H 1.08002 * 120.34843 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.45560 * 180.02562 * 21 20 19 39 39 H 1.09001 * 115.55319 * 152.91611 * 24 23 22 40 40 H 1.09003 * 117.49696 * 359.97438 * 25 24 23 41 41 H 1.09006 * 117.49797 * 145.02077 * 25 24 23 42 42 H 1.08999 * 117.49541 * 214.97678 * 26 24 23 43 43 H 1.08996 * 117.49532 * 359.97438 * 26 24 23 44 44 H 1.09000 * 110.36656 * 265.29089 * 27 15 14 45 45 H 1.09004 * 110.37156 * 142.96214 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1740 1.2180 0.3404 5 6 1.5289 2.3457 -0.4430 6 7 0.3788 2.2748 -1.0793 7 14 2.3254 4.0072 -0.1360 8 1 3.1222 4.4014 -1.3255 9 1 1.2713 5.0232 0.1125 10 1 3.2160 3.9178 1.0489 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0973 -0.0685 13 6 1.8484 -2.1121 1.2553 14 6 2.1064 -3.5582 0.7824 15 7 2.0265 -3.5584 -0.6856 16 6 2.2143 -4.6290 -1.4824 17 8 2.2181 -4.4943 -2.6904 18 6 2.4156 -5.9673 -0.8872 19 6 3.2849 -6.1408 0.1968 20 6 3.4385 -7.4136 0.7169 21 6 2.7346 -8.4641 0.1551 22 7 1.9215 -8.2705 -0.8655 23 6 1.7377 -7.0774 -1.3917 24 6 0.7924 -6.9108 -2.5535 25 6 -0.0455 -8.1242 -2.9620 26 6 1.1188 -7.6656 -3.8437 27 6 1.7075 -2.1933 -1.1418 28 1 -0.3633 0.0913 -1.0236 29 1 -0.3634 -0.9322 0.4328 30 1 -0.3634 0.8407 0.5909 31 1 -0.0552 3.0852 -1.3885 32 1 2.5042 -1.8555 2.0871 33 1 0.8034 -1.9750 1.5334 34 1 3.0981 -3.8806 1.0998 35 1 1.3499 -4.2244 1.1972 36 1 3.8223 -5.3028 0.6156 37 1 4.1007 -7.5854 1.5525 38 1 2.8523 -9.4586 0.5594 39 1 0.3329 -5.9270 -2.6485 40 1 0.0874 -9.0429 -2.3908 41 1 -1.0560 -7.9384 -3.3262 42 1 0.8738 -7.1784 -4.7875 43 1 2.0175 -8.2823 -3.8524 44 1 0.6326 -2.0825 -1.2847 45 1 2.2392 -1.9683 -2.0664 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971864217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:19 Heat of formation + Delta-G solvation = 48.008103 kcal Electronic energy + Delta-G solvation = -26346.174946 eV Core-core repulsion = 22750.941243 eV Total energy + Delta-G solvation = -3595.233703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.96203 -40.51472 -38.85384 -37.84714 -36.59803 -34.01968 -33.16302 -32.22216 -31.23401 -29.45726 -28.09318 -26.26123 -25.60577 -24.66012 -23.65210 -23.23150 -21.90899 -21.02600 -20.73019 -18.97661 -18.44075 -18.10172 -17.57916 -17.25373 -16.81666 -16.36394 -16.07586 -15.62212 -15.29430 -15.03127 -14.89271 -14.79800 -14.54071 -14.36211 -14.09183 -13.90407 -13.65006 -13.40448 -13.07627 -12.78687 -12.72151 -12.46588 -12.42474 -12.41173 -12.20093 -12.07541 -11.83734 -11.79534 -11.47109 -11.44885 -11.22943 -10.89140 -10.65403 -10.45256 -9.88121 -9.69053 -8.82953 -7.84526 -5.33578 -0.26908 0.16934 1.47819 1.48365 1.55912 1.58370 1.85459 2.50595 2.57675 3.05131 3.13617 3.25724 3.33675 3.51307 3.60487 3.81107 3.89167 3.91664 3.99269 4.11784 4.13737 4.15576 4.20915 4.29953 4.41269 4.50960 4.62195 4.62595 4.72117 4.77499 4.81054 4.93358 4.95951 5.01464 5.06862 5.13837 5.15742 5.19718 5.26432 5.28551 5.41596 5.62777 5.63427 5.70930 6.29460 6.42074 6.89026 6.97226 7.12210 7.82510 8.26151 9.18579 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.003050 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.559777 B = 9179.556722 C = 9862.006645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.601 5.601 3 C -0.266 4.266 4 H 0.079 0.921 5 C -0.053 4.053 6 N -0.939 5.939 7 Si 0.971 3.029 8 H -0.290 1.290 9 H -0.295 1.295 10 H -0.264 1.264 11 C 0.167 3.833 12 H 0.077 0.923 13 C -0.139 4.139 14 C 0.104 3.896 15 N -0.607 5.607 16 C 0.571 3.429 17 O -0.572 6.572 18 C -0.189 4.189 19 C -0.046 4.046 20 C -0.167 4.167 21 C 0.119 3.881 22 N -0.501 5.501 23 C 0.194 3.806 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.150 4.150 27 C 0.098 3.902 28 H -0.002 1.002 29 H 0.032 0.968 30 H 0.021 0.979 31 H 0.248 0.752 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.162 0.838 37 H 0.184 0.816 38 H 0.197 0.803 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.051 0.949 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.928 -23.282 7.439 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.322 5.322 3 C -0.396 4.396 4 H 0.096 0.904 5 C -0.248 4.248 6 N -0.586 5.586 7 Si 0.800 3.200 8 H -0.217 1.217 9 H -0.221 1.221 10 H -0.189 1.189 11 C 0.058 3.942 12 H 0.095 0.905 13 C -0.179 4.179 14 C -0.017 4.017 15 N -0.339 5.339 16 C 0.361 3.639 17 O -0.453 6.453 18 C -0.195 4.195 19 C -0.072 4.072 20 C -0.186 4.186 21 C -0.038 4.038 22 N -0.210 5.210 23 C 0.056 3.944 24 C -0.158 4.158 25 C -0.177 4.177 26 C -0.187 4.187 27 C -0.027 4.027 28 H 0.016 0.984 29 H 0.050 0.950 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.179 0.821 37 H 0.201 0.799 38 H 0.214 0.786 39 H 0.113 0.887 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.069 0.931 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.383 -23.816 6.378 25.042 hybrid contribution 0.378 2.349 -0.265 2.394 sum 4.761 -21.467 6.113 22.823 Atomic orbital electron populations 1.20487 0.82638 0.96006 0.97377 1.44046 1.02060 1.00881 1.85208 1.19630 0.97974 0.86045 1.35933 0.90372 1.25833 0.98393 1.02025 0.98587 1.70262 1.19241 1.27431 1.41662 0.85192 0.77325 0.79525 0.78001 1.21691 1.22121 1.18857 1.21612 0.95829 0.84496 0.92294 0.90456 1.23094 1.03106 0.92696 0.98956 1.22392 1.03287 0.98170 0.77898 1.48443 1.68555 1.08084 1.08841 1.18214 0.76231 0.83915 0.85571 1.90768 1.52811 1.86025 1.15663 1.20534 1.04524 0.93209 1.01201 1.22194 0.93762 1.00045 0.91166 1.22521 1.01699 0.91725 1.02635 1.23660 0.89029 1.01527 0.89564 1.67459 1.18850 1.22614 1.12030 1.20335 0.92964 0.87631 0.93425 1.20876 1.02401 0.97883 0.94648 1.23041 0.95839 0.97110 1.01757 1.22896 1.00561 1.02010 0.93279 1.22714 0.99439 0.81219 0.99338 0.98367 0.95000 0.96023 0.94296 0.88163 0.91106 0.88280 0.90060 0.82105 0.79877 0.78583 0.88717 0.86955 0.87364 0.88139 0.88796 0.93089 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.74 7.55 127.77 0.96 9.70 16 2 N -0.60 -28.99 2.96 -695.01 -2.06 -31.05 16 3 C -0.27 -14.15 9.63 84.03 0.81 -13.34 16 4 H 0.08 3.96 7.85 -2.91 -0.02 3.94 16 5 C -0.05 -2.95 5.12 84.86 0.43 -2.51 16 6 N -0.94 -55.48 10.57 21.65 0.23 -55.25 16 7 Si 0.97 44.41 29.57 68.60 2.03 46.44 16 8 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 9 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 10 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 11 C 0.17 6.36 3.53 46.39 0.16 6.53 16 12 H 0.08 2.95 7.95 -2.39 -0.02 2.93 16 13 C -0.14 -3.87 6.50 31.78 0.21 -3.66 16 14 C 0.10 2.38 5.66 86.73 0.49 2.88 16 15 N -0.61 -19.21 3.33 -815.20 -2.71 -21.93 16 16 C 0.57 19.22 6.75 86.79 0.59 19.81 16 17 O -0.57 -23.93 15.63 -3.87 -0.06 -23.99 16 18 C -0.19 -4.98 5.47 -19.99 -0.11 -5.09 16 19 C -0.05 -0.80 8.66 22.73 0.20 -0.61 16 20 C -0.17 -1.93 10.10 22.33 0.23 -1.71 16 21 C 0.12 1.67 11.17 84.71 0.95 2.62 16 22 N -0.50 -10.92 9.31 -182.85 -1.70 -12.62 16 23 C 0.19 5.13 6.48 42.89 0.28 5.41 16 24 C -0.14 -3.85 4.89 -11.54 -0.06 -3.91 16 25 C -0.14 -3.01 10.03 30.62 0.31 -2.70 16 26 C -0.15 -3.60 10.24 30.62 0.31 -3.29 16 27 C 0.10 3.84 6.49 86.86 0.56 4.40 16 28 H 0.00 -0.11 7.38 -2.39 -0.02 -0.13 16 29 H 0.03 1.31 6.38 -2.38 -0.02 1.30 16 30 H 0.02 1.12 7.22 -2.39 -0.02 1.10 16 31 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.07 2.10 6.46 -2.39 -0.02 2.09 16 34 H 0.10 1.63 5.77 -2.39 -0.01 1.61 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.16 2.17 5.72 -2.91 -0.02 2.15 16 37 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 38 H 0.20 1.18 8.06 -2.91 -0.02 1.15 16 39 H 0.09 3.09 6.90 -2.39 -0.02 3.08 16 40 H 0.11 2.27 7.56 -2.39 -0.02 2.26 16 41 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.05 2.17 6.96 -2.39 -0.02 2.15 16 45 H 0.05 2.04 7.99 -2.38 -0.02 2.02 16 Total: -1.00 -72.80 360.23 3.04 -69.76 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.00 Total: 14.12 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 6.32 Total: 14.52 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -6.24 Total: -120.85 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.06 Total: -23.99 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -72.80 3.04 -69.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971864217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.765 kcal (2) G-P(sol) polarization free energy of solvation -72.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds