Wall clock time and date at job start Tue Mar 31 2020 11:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 119.99668 * 2 1 4 4 H 1.07998 * 119.99509 * 203.50403 * 3 2 1 5 5 C 1.38813 * 120.00344 * 23.51337 * 3 2 1 6 6 N 1.31618 * 119.99593 * 14.96366 * 5 3 2 7 7 Si 1.86795 * 120.00110 * 194.97124 * 5 3 2 8 8 H 1.48504 * 109.47021 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47232 * 119.99200 * 7 5 3 10 10 H 1.48498 * 109.47205 * 239.99791 * 7 5 3 11 11 C 1.46499 * 119.99728 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.63547 * 178.31636 * 11 2 1 13 13 C 1.55154 * 110.71979 * 301.45340 * 11 2 1 14 14 C 1.54906 * 101.57980 * 154.04822 * 13 11 2 15 15 N 1.47419 * 104.83278 * 322.98875 * 14 13 11 16 16 C 1.34781 * 125.64859 * 204.09420 * 15 14 13 17 17 O 1.21283 * 119.99824 * 185.09835 * 16 15 14 18 18 C 1.50697 * 119.99937 * 5.10307 * 16 15 14 19 19 C 1.50696 * 115.55046 * 65.93763 * 18 16 15 20 20 C 1.38670 * 120.42391 * 35.83886 * 19 18 16 21 21 C 1.38627 * 118.42435 * 179.97438 * 20 19 18 22 22 C 1.38226 * 119.15918 * 359.97438 * 21 20 19 23 23 N 1.31851 * 120.76583 * 359.72532 * 22 21 20 24 24 C 1.31887 * 121.72407 * 0.56841 * 23 22 21 25 25 C 1.53005 * 117.51675 * 211.63618 * 18 16 15 26 26 C 1.52994 * 117.49794 * 280.26260 * 18 16 15 27 27 C 1.47022 * 108.70495 * 24.35790 * 15 14 13 28 28 H 1.08996 * 109.47447 * 275.42686 * 1 2 3 29 29 H 1.08998 * 109.46967 * 35.42773 * 1 2 3 30 30 H 1.09003 * 109.47175 * 155.42729 * 1 2 3 31 31 H 0.97008 * 119.99324 * 180.02562 * 6 5 3 32 32 H 1.09000 * 111.00557 * 35.97093 * 13 11 2 33 33 H 1.09003 * 111.00351 * 272.12258 * 13 11 2 34 34 H 1.09006 * 110.36727 * 204.15179 * 14 13 11 35 35 H 1.09000 * 110.37282 * 81.83279 * 14 13 11 36 36 H 1.08005 * 120.78574 * 359.97438 * 20 19 18 37 37 H 1.07999 * 120.41668 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.61215 * 179.97438 * 22 21 20 39 39 H 1.07993 * 119.61649 * 179.70876 * 24 23 22 40 40 H 1.08998 * 117.49983 * 214.97153 * 25 18 16 41 41 H 1.09001 * 117.49834 * 359.97438 * 25 18 16 42 42 H 1.09007 * 117.50069 * 359.97438 * 26 18 16 43 43 H 1.09003 * 117.49999 * 144.97681 * 26 18 16 44 44 H 1.08997 * 109.88608 * 118.12803 * 27 15 14 45 45 H 1.09000 * 109.88226 * 239.29919 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1624 1.2247 -0.3730 5 6 1.5420 2.3382 0.4796 6 7 0.4416 2.2522 1.1965 7 14 2.2860 4.0107 0.1073 8 1 3.5131 3.8356 -0.7105 9 1 1.3037 4.8334 -0.6433 10 1 2.6330 4.6925 1.3801 11 6 2.1975 -1.2688 -0.0006 12 1 3.2726 -1.0916 -0.0305 13 6 1.8161 -2.1233 1.2370 14 6 2.1053 -3.5568 0.7261 15 7 1.6993 -3.5415 -0.6910 16 6 1.3360 -4.6182 -1.4157 17 8 1.1091 -4.5025 -2.6015 18 6 1.2115 -5.9657 -0.7526 19 6 0.1108 -6.0880 0.2694 20 6 -1.0947 -5.4277 0.0855 21 6 -2.0788 -5.5696 1.0515 22 6 -1.8277 -6.3593 2.1578 23 7 -0.6713 -6.9773 2.2969 24 6 0.2895 -6.8607 1.4010 25 6 1.5326 -7.2011 -1.5963 26 6 2.5003 -6.7505 -0.5002 27 6 1.7626 -2.1580 -1.1846 28 1 -0.3634 0.0972 1.0230 29 1 -0.3633 0.8374 -0.5957 30 1 -0.3634 -0.9346 -0.4274 31 1 0.0168 3.0575 1.5314 32 1 0.7617 -2.0023 1.4855 33 1 2.4477 -1.8780 2.0909 34 1 1.5139 -4.2843 1.2823 35 1 3.1678 -3.7838 0.8140 36 1 -1.2629 -4.8175 -0.7896 37 1 -3.0296 -5.0694 0.9410 38 1 -2.5891 -6.4746 2.9151 39 1 1.2252 -7.3784 1.5515 40 1 0.9478 -8.1022 -1.4121 41 1 1.8336 -7.0393 -2.6313 42 1 3.4383 -6.2924 -0.8142 43 1 2.5523 -7.3551 0.4053 44 1 2.4909 -2.0855 -1.9923 45 1 0.7803 -1.8457 -1.5392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972156631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:43 Heat of formation + Delta-G solvation = 64.663010 kcal Electronic energy + Delta-G solvation = -26896.864719 eV Core-core repulsion = 23302.353227 eV Total energy + Delta-G solvation = -3594.511492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -40.99884 -39.60487 -37.88844 -36.50776 -34.81892 -32.60689 -31.63383 -31.03199 -29.81770 -28.13679 -26.10864 -25.43729 -23.89640 -23.71628 -22.48658 -22.39687 -21.64420 -19.27419 -18.85355 -17.67763 -17.06520 -16.96423 -16.30025 -15.85470 -15.73440 -15.17355 -14.76136 -14.46935 -14.09630 -13.95077 -13.64108 -13.35269 -13.21836 -13.12137 -12.62652 -12.54576 -12.37161 -12.19650 -11.73736 -11.68322 -11.39766 -11.25547 -11.03712 -10.87843 -10.80099 -10.62306 -10.52716 -10.25560 -10.02020 -9.91775 -9.89479 -9.82787 -9.45370 -9.02213 -8.62357 -8.38384 -6.84757 -5.80320 -3.27700 0.86718 1.10549 2.58281 3.02687 3.34174 3.38855 3.42247 3.43996 3.77048 4.09130 4.34896 4.40580 4.44117 4.55542 4.63809 4.78605 4.81138 5.03071 5.05082 5.16353 5.27078 5.30199 5.33060 5.44237 5.55014 5.56015 5.59831 5.62741 5.75585 5.84056 5.87328 5.96481 5.98348 6.07614 6.24719 6.36025 6.47903 6.53427 6.58853 6.74131 6.83836 7.27177 7.63903 7.71280 7.74720 7.76493 8.25564 8.32113 9.14401 9.77183 10.26206 11.24352 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.003627 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.059575 B = 7718.586509 C = 8483.530653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.902 5.902 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.174 3.826 12 H 0.079 0.921 13 C -0.150 4.150 14 C 0.101 3.899 15 N -0.601 5.601 16 C 0.563 3.437 17 O -0.541 6.541 18 C -0.115 4.115 19 C -0.089 4.089 20 C -0.061 4.061 21 C -0.163 4.163 22 C 0.094 3.906 23 N -0.480 5.480 24 C 0.100 3.900 25 C -0.133 4.133 26 C -0.155 4.155 27 C 0.086 3.914 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.002 0.998 31 H 0.253 0.747 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.132 0.868 37 H 0.138 0.862 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.062 0.938 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.241 -19.347 0.536 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.305 5.305 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.547 5.547 7 Si 0.734 3.266 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.190 4.190 14 C -0.022 4.022 15 N -0.334 5.334 16 C 0.350 3.650 17 O -0.419 6.419 18 C -0.119 4.119 19 C -0.092 4.092 20 C -0.087 4.087 21 C -0.183 4.183 22 C -0.063 4.063 23 N -0.188 5.188 24 C -0.057 4.057 25 C -0.170 4.170 26 C -0.192 4.192 27 C -0.038 4.038 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.020 0.980 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.174 0.826 39 H 0.173 0.827 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.080 0.920 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.372 -19.663 0.672 19.678 hybrid contribution 0.030 1.630 -0.780 1.807 sum -0.341 -18.033 -0.108 18.037 Atomic orbital electron populations 1.20787 0.82597 0.95510 0.99656 1.43852 1.01782 0.99888 1.84989 1.19245 0.98887 0.85296 1.35694 0.91194 1.25012 0.98029 0.98586 0.97637 1.70086 1.20967 1.27332 1.36269 0.86190 0.78534 0.84205 0.77626 1.20222 1.21547 1.21688 1.21292 0.96370 0.85971 0.90051 0.90325 1.23375 1.02810 0.92524 1.00314 1.22380 0.99354 0.99350 0.81115 1.48387 1.65090 1.07435 1.12460 1.18864 0.76978 0.83415 0.85766 1.90701 1.51063 1.85119 1.15004 1.19968 0.97818 0.92556 1.01517 1.19722 0.94198 0.99549 0.95689 1.21476 0.92086 0.96297 0.98792 1.22169 1.00606 1.00244 0.95248 1.22790 0.94368 0.92733 0.96377 1.67729 1.01242 1.20797 1.29069 1.22624 0.97939 0.95998 0.89128 1.23080 1.01245 0.95178 0.97490 1.23180 0.92979 1.01822 1.01249 1.22786 1.02351 0.79561 0.99065 0.94757 0.94193 0.97978 0.93713 0.90764 0.90356 0.91454 0.91583 0.84977 0.84451 0.82614 0.82699 0.87763 0.87252 0.87647 0.87364 0.91965 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.80 7.69 59.85 0.46 4.26 16 2 N -0.58 -14.04 2.93 -171.38 -0.50 -14.55 16 3 C -0.26 -6.95 9.59 -15.06 -0.14 -7.10 16 4 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 5 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 6 N -0.90 -25.64 10.85 55.49 0.60 -25.04 16 7 Si 0.90 21.38 29.58 -169.99 -5.03 16.35 16 8 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 C 0.17 3.37 3.42 -66.09 -0.23 3.14 16 12 H 0.08 1.51 7.93 -51.93 -0.41 1.09 16 13 C -0.15 -2.52 6.65 -24.59 -0.16 -2.69 16 14 C 0.10 1.40 6.71 -2.53 -0.02 1.38 16 15 N -0.60 -9.44 3.33 -170.52 -0.57 -10.01 16 16 C 0.56 8.78 6.20 -10.99 -0.07 8.72 16 17 O -0.54 -10.32 17.04 5.55 0.09 -10.23 16 18 C -0.11 -1.34 1.60 -156.82 -0.25 -1.60 16 19 C -0.09 -1.03 3.95 -104.48 -0.41 -1.44 16 20 C -0.06 -0.74 9.45 -39.28 -0.37 -1.11 16 21 C -0.16 -1.71 10.11 -39.44 -0.40 -2.11 16 22 C 0.09 0.97 11.18 -17.55 -0.20 0.78 16 23 N -0.48 -5.61 10.36 -13.25 -0.14 -5.75 16 24 C 0.10 1.07 10.53 -17.55 -0.18 0.88 16 25 C -0.13 -1.29 9.76 -26.73 -0.26 -1.55 16 26 C -0.16 -1.35 9.58 -26.74 -0.26 -1.61 16 27 C 0.09 1.57 6.41 -3.06 -0.02 1.55 16 28 H 0.03 0.89 7.30 -51.93 -0.38 0.51 16 29 H 0.04 1.03 7.45 -51.93 -0.39 0.65 16 30 H 0.00 0.04 6.31 -51.93 -0.33 -0.29 16 31 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.07 1.38 7.28 -51.93 -0.38 1.00 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 0.87 6.33 -51.93 -0.33 0.55 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.13 1.75 7.61 -52.48 -0.40 1.35 16 37 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.16 1.19 8.06 -52.48 -0.42 0.76 16 39 H 0.16 1.29 5.95 -52.49 -0.31 0.97 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.11 1.15 8.01 -51.93 -0.42 0.74 16 42 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.11 0.70 6.11 -51.93 -0.32 0.39 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.07 1.46 6.15 -51.93 -0.32 1.14 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -31.49 362.73 -9.15 -40.64 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.48 Total: 1.51 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.60 Total: 1.60 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.61 Total: -55.34 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.49 -9.15 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972156631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.307 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds