Wall clock time and date at job start Tue Mar 31 2020 11:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 119.99668 * 2 1 4 4 H 1.07998 * 119.99509 * 203.50403 * 3 2 1 5 5 C 1.38813 * 120.00344 * 23.51337 * 3 2 1 6 6 N 1.31618 * 119.99593 * 14.96366 * 5 3 2 7 7 Si 1.86795 * 120.00110 * 194.97124 * 5 3 2 8 8 H 1.48504 * 109.47021 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47232 * 119.99200 * 7 5 3 10 10 H 1.48498 * 109.47205 * 239.99791 * 7 5 3 11 11 C 1.46499 * 119.99728 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.63547 * 178.31636 * 11 2 1 13 13 C 1.55154 * 110.71979 * 301.45340 * 11 2 1 14 14 C 1.54906 * 101.57980 * 154.04822 * 13 11 2 15 15 N 1.47419 * 104.83278 * 322.98875 * 14 13 11 16 16 C 1.34781 * 125.64859 * 204.09420 * 15 14 13 17 17 O 1.21283 * 119.99824 * 185.09835 * 16 15 14 18 18 C 1.50697 * 119.99937 * 5.10307 * 16 15 14 19 19 C 1.50696 * 115.55046 * 65.93763 * 18 16 15 20 20 C 1.38670 * 120.42391 * 35.83886 * 19 18 16 21 21 C 1.38627 * 118.42435 * 179.97438 * 20 19 18 22 22 C 1.38226 * 119.15918 * 359.97438 * 21 20 19 23 23 N 1.31851 * 120.76583 * 359.72532 * 22 21 20 24 24 C 1.31887 * 121.72407 * 0.56841 * 23 22 21 25 25 C 1.53005 * 117.51675 * 211.63618 * 18 16 15 26 26 C 1.52994 * 117.49794 * 280.26260 * 18 16 15 27 27 C 1.47022 * 108.70495 * 24.35790 * 15 14 13 28 28 H 1.08996 * 109.47447 * 275.42686 * 1 2 3 29 29 H 1.08998 * 109.46967 * 35.42773 * 1 2 3 30 30 H 1.09003 * 109.47175 * 155.42729 * 1 2 3 31 31 H 0.97008 * 119.99324 * 180.02562 * 6 5 3 32 32 H 1.09000 * 111.00557 * 35.97093 * 13 11 2 33 33 H 1.09003 * 111.00351 * 272.12258 * 13 11 2 34 34 H 1.09006 * 110.36727 * 204.15179 * 14 13 11 35 35 H 1.09000 * 110.37282 * 81.83279 * 14 13 11 36 36 H 1.08005 * 120.78574 * 359.97438 * 20 19 18 37 37 H 1.07999 * 120.41668 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.61215 * 179.97438 * 22 21 20 39 39 H 1.07993 * 119.61649 * 179.70876 * 24 23 22 40 40 H 1.08998 * 117.49983 * 214.97153 * 25 18 16 41 41 H 1.09001 * 117.49834 * 359.97438 * 25 18 16 42 42 H 1.09007 * 117.50069 * 359.97438 * 26 18 16 43 43 H 1.09003 * 117.49999 * 144.97681 * 26 18 16 44 44 H 1.08997 * 109.88608 * 118.12803 * 27 15 14 45 45 H 1.09000 * 109.88226 * 239.29919 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1624 1.2247 -0.3730 5 6 1.5420 2.3382 0.4796 6 7 0.4416 2.2522 1.1965 7 14 2.2860 4.0107 0.1073 8 1 3.5131 3.8356 -0.7105 9 1 1.3037 4.8334 -0.6433 10 1 2.6330 4.6925 1.3801 11 6 2.1975 -1.2688 -0.0006 12 1 3.2726 -1.0916 -0.0305 13 6 1.8161 -2.1233 1.2370 14 6 2.1053 -3.5568 0.7261 15 7 1.6993 -3.5415 -0.6910 16 6 1.3360 -4.6182 -1.4157 17 8 1.1091 -4.5025 -2.6015 18 6 1.2115 -5.9657 -0.7526 19 6 0.1108 -6.0880 0.2694 20 6 -1.0947 -5.4277 0.0855 21 6 -2.0788 -5.5696 1.0515 22 6 -1.8277 -6.3593 2.1578 23 7 -0.6713 -6.9773 2.2969 24 6 0.2895 -6.8607 1.4010 25 6 1.5326 -7.2011 -1.5963 26 6 2.5003 -6.7505 -0.5002 27 6 1.7626 -2.1580 -1.1846 28 1 -0.3634 0.0972 1.0230 29 1 -0.3633 0.8374 -0.5957 30 1 -0.3634 -0.9346 -0.4274 31 1 0.0168 3.0575 1.5314 32 1 0.7617 -2.0023 1.4855 33 1 2.4477 -1.8780 2.0909 34 1 1.5139 -4.2843 1.2823 35 1 3.1678 -3.7838 0.8140 36 1 -1.2629 -4.8175 -0.7896 37 1 -3.0296 -5.0694 0.9410 38 1 -2.5891 -6.4746 2.9151 39 1 1.2252 -7.3784 1.5515 40 1 0.9478 -8.1022 -1.4121 41 1 1.8336 -7.0393 -2.6313 42 1 3.4383 -6.2924 -0.8142 43 1 2.5523 -7.3551 0.4053 44 1 2.4909 -2.0855 -1.9923 45 1 0.7803 -1.8457 -1.5392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972156631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:42 Heat of formation + Delta-G solvation = 46.252429 kcal Electronic energy + Delta-G solvation = -26897.663062 eV Core-core repulsion = 23302.353227 eV Total energy + Delta-G solvation = -3595.309835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.97233 -40.69937 -39.22047 -37.56887 -36.57429 -33.53456 -33.35477 -31.83366 -31.36328 -29.62481 -28.10947 -26.58832 -25.03385 -24.71512 -23.94938 -23.23551 -22.70895 -20.90019 -19.97411 -18.97408 -18.60433 -17.95653 -17.58000 -17.07604 -16.81827 -16.57111 -15.94132 -15.55857 -15.38029 -15.15767 -14.97451 -14.90556 -14.45029 -14.23491 -14.10593 -14.04176 -13.59059 -13.25200 -13.00725 -12.97880 -12.89603 -12.60999 -12.42285 -12.38684 -12.29848 -12.10635 -12.02964 -11.85090 -11.72683 -11.50686 -11.07788 -10.73398 -10.67222 -10.38381 -9.83136 -9.71639 -8.83716 -7.86360 -5.35665 0.06546 0.24962 1.40580 1.45856 1.48400 1.58012 1.83119 2.49556 2.57248 2.94955 3.25440 3.30570 3.36641 3.52268 3.62103 3.73719 3.80192 3.87773 3.91311 3.98076 4.02429 4.23271 4.27512 4.29116 4.39787 4.46326 4.59555 4.62685 4.69782 4.71361 4.86536 4.87487 4.93168 4.94227 5.09107 5.12996 5.15687 5.19357 5.26120 5.28289 5.33837 5.61414 5.64500 5.69342 6.28784 6.46741 6.96395 7.01700 7.10478 7.80213 8.25801 9.17243 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.003627 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.059575 B = 7718.586509 C = 8483.530653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.600 5.600 3 C -0.268 4.268 4 H 0.075 0.925 5 C -0.046 4.046 6 N -0.934 5.934 7 Si 0.967 3.033 8 H -0.266 1.266 9 H -0.294 1.294 10 H -0.290 1.290 11 C 0.168 3.832 12 H 0.085 0.915 13 C -0.141 4.141 14 C 0.114 3.886 15 N -0.602 5.602 16 C 0.562 3.438 17 O -0.584 6.584 18 C -0.132 4.132 19 C -0.091 4.091 20 C -0.083 4.083 21 C -0.166 4.166 22 C 0.092 3.908 23 N -0.496 5.496 24 C 0.104 3.896 25 C -0.131 4.131 26 C -0.129 4.129 27 C 0.098 3.902 28 H 0.011 0.989 29 H 0.010 0.990 30 H 0.021 0.979 31 H 0.248 0.752 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.152 0.848 38 H 0.182 0.818 39 H 0.184 0.816 40 H 0.123 0.877 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.140 0.860 44 H 0.059 0.941 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -21.590 1.687 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.322 5.322 3 C -0.398 4.398 4 H 0.093 0.907 5 C -0.242 4.242 6 N -0.580 5.580 7 Si 0.795 3.205 8 H -0.190 1.190 9 H -0.221 1.221 10 H -0.217 1.217 11 C 0.060 3.940 12 H 0.103 0.897 13 C -0.181 4.181 14 C -0.008 4.008 15 N -0.334 5.334 16 C 0.351 3.649 17 O -0.465 6.465 18 C -0.136 4.136 19 C -0.093 4.093 20 C -0.110 4.110 21 C -0.185 4.185 22 C -0.065 4.065 23 N -0.204 5.204 24 C -0.053 4.053 25 C -0.168 4.168 26 C -0.165 4.165 27 C -0.027 4.027 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.170 0.830 38 H 0.199 0.801 39 H 0.201 0.799 40 H 0.141 0.859 41 H 0.114 0.886 42 H 0.127 0.873 43 H 0.158 0.842 44 H 0.077 0.923 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.201 -21.949 1.833 22.058 hybrid contribution -0.470 2.273 -1.194 2.610 sum 0.730 -19.676 0.639 19.700 Atomic orbital electron populations 1.20424 0.83139 0.95138 0.97715 1.44002 1.01755 1.01068 1.85330 1.19584 0.99081 0.86450 1.34708 0.90741 1.25742 0.98703 1.01767 0.97986 1.70232 1.22393 1.27720 1.37650 0.85214 0.77941 0.80086 0.77238 1.18985 1.22125 1.21718 1.21447 0.96184 0.84686 0.91705 0.89719 1.23200 1.01584 0.94047 0.99279 1.22418 1.01374 0.97401 0.79630 1.48429 1.65259 1.06426 1.13251 1.19571 0.75446 0.84579 0.85310 1.90673 1.52703 1.85983 1.17145 1.19829 1.00296 0.90659 1.02805 1.19707 0.93658 0.99938 0.96042 1.21498 0.93470 0.97156 0.98835 1.22366 1.00911 1.00289 0.94957 1.23217 0.94685 0.91938 0.96626 1.67803 1.01821 1.21248 1.29506 1.22986 0.98699 0.95474 0.88133 1.23166 1.01786 0.94661 0.97176 1.23390 0.91479 0.99890 1.01786 1.22408 1.00642 0.81211 0.98411 0.97054 0.97089 0.96087 0.94227 0.92901 0.89477 0.89905 0.88536 0.87192 0.82983 0.80110 0.79948 0.85910 0.88592 0.87308 0.84187 0.92304 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.99 7.69 127.77 0.98 9.97 16 2 N -0.60 -29.32 2.93 -696.13 -2.04 -31.37 16 3 C -0.27 -14.36 9.59 84.03 0.81 -13.55 16 4 H 0.07 3.84 7.85 -2.91 -0.02 3.82 16 5 C -0.05 -2.54 5.06 84.86 0.43 -2.11 16 6 N -0.93 -54.42 10.85 21.65 0.23 -54.19 16 7 Si 0.97 44.37 29.58 68.60 2.03 46.40 16 8 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 9 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 11 C 0.17 6.49 3.42 46.18 0.16 6.64 16 12 H 0.08 3.16 7.93 -2.39 -0.02 3.14 16 13 C -0.14 -4.59 6.65 31.98 0.21 -4.37 16 14 C 0.11 2.85 6.71 86.86 0.58 3.44 16 15 N -0.60 -18.34 3.33 -811.78 -2.70 -21.04 16 16 C 0.56 17.20 6.20 87.66 0.54 17.75 16 17 O -0.58 -22.74 17.04 -3.04 -0.05 -22.79 16 18 C -0.13 -2.82 1.60 -53.68 -0.09 -2.91 16 19 C -0.09 -1.92 3.95 -19.77 -0.08 -2.00 16 20 C -0.08 -2.00 9.45 22.47 0.21 -1.79 16 21 C -0.17 -3.30 10.11 22.36 0.23 -3.07 16 22 C 0.09 1.69 11.18 84.69 0.95 2.64 16 23 N -0.50 -10.14 10.36 -195.84 -2.03 -12.17 16 24 C 0.10 1.87 10.53 84.67 0.89 2.76 16 25 C -0.13 -2.22 9.76 30.59 0.30 -1.93 16 26 C -0.13 -1.73 9.58 30.59 0.29 -1.44 16 27 C 0.10 3.60 6.41 86.73 0.56 4.15 16 28 H 0.01 0.61 7.30 -2.39 -0.02 0.59 16 29 H 0.01 0.57 7.45 -2.39 -0.02 0.55 16 30 H 0.02 0.93 6.31 -2.39 -0.02 0.92 16 31 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 32 H 0.05 1.96 7.28 -2.39 -0.02 1.94 16 33 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.08 1.89 6.33 -2.38 -0.02 1.87 16 35 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.11 3.06 7.61 -2.91 -0.02 3.04 16 37 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 38 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 39 H 0.18 2.11 5.95 -2.91 -0.02 2.09 16 40 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.10 1.91 8.01 -2.39 -0.02 1.90 16 42 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.14 1.02 6.11 -2.39 -0.01 1.00 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.05 1.93 6.15 -2.39 -0.01 1.92 16 Total: -1.00 -70.22 362.73 3.41 -66.81 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.99 Total: 14.17 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 6.98 Total: 14.18 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -6.54 Total: -118.77 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -70.22 3.41 -66.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972156631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.058 kcal (2) G-P(sol) polarization free energy of solvation -70.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds