Wall clock time and date at job start Tue Mar 31 2020 11:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46487 * 1 3 3 C 1.34777 * 120.00274 * 2 1 4 4 O 1.21514 * 120.00583 * 176.34341 * 3 2 1 5 5 C 1.48151 * 119.99786 * 356.34922 * 3 2 1 6 6 C 1.39832 * 120.92551 * 35.59414 * 5 3 2 7 7 C 1.38118 * 119.00644 * 179.97438 * 6 5 3 8 8 N 1.31831 * 120.89642 * 0.02562 * 7 6 5 9 9 C 1.31795 * 122.05230 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.55755 * 179.97438 * 9 8 7 11 11 C 1.52994 * 117.49874 * 163.61841 * 10 9 8 12 12 C 1.52995 * 117.49637 * 94.99469 * 10 9 8 13 13 C 1.38179 * 120.88775 * 359.73836 * 9 8 7 14 14 C 1.46504 * 120.00333 * 180.02562 * 2 1 3 15 15 C 1.53775 * 113.61532 * 59.99684 * 14 2 1 16 16 C 1.53779 * 87.08473 * 220.02266 * 15 14 2 17 17 N 1.46507 * 113.61551 * 139.97963 * 16 15 14 18 18 C 1.36935 * 119.99846 * 154.72742 * 17 16 15 19 19 H 1.07999 * 119.99859 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99890 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99969 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00278 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47293 * 89.99581 * 22 20 18 24 24 H 1.48496 * 109.47535 * 209.99887 * 22 20 18 25 25 H 1.48508 * 109.47040 * 329.99936 * 22 20 18 26 26 C 1.53784 * 113.60971 * 322.50252 * 14 2 1 27 27 H 1.08998 * 109.47720 * 275.32845 * 1 2 3 28 28 H 1.09007 * 109.47210 * 35.33037 * 1 2 3 29 29 H 1.09006 * 109.47086 * 155.32538 * 1 2 3 30 30 H 1.08001 * 120.49460 * 0.02562 * 6 5 3 31 31 H 1.08001 * 119.55251 * 180.02562 * 7 6 5 32 32 H 1.08995 * 115.54521 * 309.33240 * 10 9 8 33 33 H 1.09001 * 117.50195 * 0.02562 * 11 10 9 34 34 H 1.08999 * 117.49805 * 145.01958 * 11 10 9 35 35 H 1.08998 * 117.49843 * 214.97596 * 12 10 9 36 36 H 1.09001 * 117.50061 * 359.97438 * 12 10 9 37 37 H 1.07998 * 120.49452 * 180.29034 * 13 9 8 38 38 H 1.09001 * 112.91047 * 191.25440 * 14 2 1 39 39 H 1.09002 * 113.61665 * 105.46901 * 15 14 2 40 40 H 1.09006 * 113.61821 * 334.57471 * 15 14 2 41 41 H 1.08995 * 113.61595 * 270.79929 * 16 15 14 42 42 H 0.97000 * 119.99634 * 335.00304 * 17 16 15 43 43 H 0.97001 * 120.00354 * 180.02562 * 21 20 18 44 44 H 1.09003 * 113.61605 * 25.43165 * 26 14 2 45 45 H 1.08998 * 113.61805 * 254.52897 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3521 1.1683 0.0671 5 6 1.4003 2.4489 -0.0817 6 6 0.1597 2.6047 0.5444 7 6 -0.4941 3.8171 0.4430 8 7 0.0359 4.8176 -0.2322 9 6 1.2018 4.7129 -0.8378 10 6 1.7549 5.8927 -1.5949 11 6 3.2431 5.8702 -1.9490 12 6 2.7308 6.8112 -0.8568 13 6 1.9262 3.5375 -0.7837 14 6 2.1975 -1.2687 -0.0006 15 6 1.8954 -2.1540 -1.2211 16 6 1.9129 -3.3524 -0.2577 17 7 0.8716 -4.3446 -0.5362 18 6 1.0479 -5.6478 -0.1544 19 1 1.9547 -5.9442 0.3517 20 6 0.0615 -6.5880 -0.4187 21 7 -1.0430 -6.2270 -1.0369 22 14 0.3022 -8.3658 0.1015 23 1 -0.2320 -8.5567 1.4739 24 1 -0.4201 -9.2591 -0.8395 25 1 1.7502 -8.6951 0.0837 26 6 1.5373 -2.3615 0.8567 27 1 -0.3634 0.0954 1.0232 28 1 -0.3634 0.8384 -0.5943 29 1 -0.3633 -0.9339 -0.4290 30 1 -0.2802 1.7894 1.0996 31 1 -1.4525 3.9472 0.9235 32 1 1.0738 6.3531 -2.3105 33 1 3.8222 5.0018 -1.6347 34 1 3.5414 6.3157 -2.8980 35 1 2.6921 7.8758 -1.0873 36 1 2.9725 6.5624 0.1766 37 1 2.8831 3.4602 -1.2783 38 1 3.2624 -1.1439 0.1954 39 1 2.6997 -2.1730 -1.9565 40 1 0.9182 -1.9656 -1.6661 41 1 2.8997 -3.7981 -0.1332 42 1 0.0590 -4.0792 -0.9947 43 1 -1.7325 -6.8839 -1.2213 44 1 0.4623 -2.2299 0.9800 45 1 2.0526 -2.5482 1.7989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999062331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:34 Heat of formation + Delta-G solvation = 76.581149 kcal Electronic energy + Delta-G solvation = -25445.497421 eV Core-core repulsion = 21851.502738 eV Total energy + Delta-G solvation = -3593.994683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.15264 -39.83828 -38.07143 -37.27907 -35.06688 -33.44985 -32.49243 -31.21922 -29.97815 -27.32830 -25.68413 -25.18374 -24.80850 -24.08617 -22.83500 -22.19750 -21.40565 -19.65666 -18.97795 -17.54528 -17.24086 -17.10999 -16.50712 -16.13148 -15.73728 -15.34065 -15.20721 -14.72768 -14.52749 -14.38872 -14.00613 -13.78166 -13.26813 -13.08901 -12.93910 -12.65648 -12.26686 -12.13802 -11.96397 -11.89495 -11.62623 -11.30611 -11.07317 -10.94540 -10.83390 -10.69024 -10.56399 -10.37894 -10.24303 -10.09374 -10.00652 -9.70302 -9.54254 -9.19727 -8.95162 -8.58754 -7.04745 -5.85129 -3.14308 0.53528 0.74744 2.58052 2.85992 3.26295 3.39128 3.44928 3.46207 3.53876 3.83358 4.13511 4.38609 4.50841 4.53840 4.56684 4.66093 4.75978 4.81400 4.99891 5.00819 5.08411 5.14957 5.26193 5.30212 5.35089 5.38838 5.42990 5.49457 5.52150 5.63928 5.71690 5.75999 5.78959 5.80029 5.88169 6.07223 6.20660 6.26043 6.26496 6.34476 6.49002 6.68890 6.94451 7.33407 7.62958 7.64201 7.98632 8.33116 9.44673 10.00473 10.35156 11.37111 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.032326 B = 0.002327 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.960616 B =12027.583522 C =12430.820436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.587 5.587 3 C 0.555 3.445 4 O -0.534 6.534 5 C -0.075 4.075 6 C -0.156 4.156 7 C 0.100 3.900 8 N -0.468 5.468 9 C 0.155 3.845 10 C -0.109 4.109 11 C -0.174 4.174 12 C -0.161 4.161 13 C -0.118 4.118 14 C 0.114 3.886 15 C -0.163 4.163 16 C 0.170 3.830 17 N -0.709 5.709 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.174 4.174 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.152 0.848 31 H 0.164 0.836 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.144 0.856 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.084 0.916 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.038 24.304 0.677 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.317 5.317 3 C 0.342 3.658 4 O -0.411 6.411 5 C -0.086 4.086 6 C -0.176 4.176 7 C -0.057 4.057 8 N -0.177 5.177 9 C 0.017 3.983 10 C -0.128 4.128 11 C -0.211 4.211 12 C -0.198 4.198 13 C -0.139 4.139 14 C 0.012 3.988 15 C -0.203 4.203 16 C 0.057 3.943 17 N -0.347 5.347 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.216 4.216 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.170 0.830 31 H 0.181 0.819 32 H 0.142 0.858 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.162 0.838 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.260 24.826 0.710 25.050 hybrid contribution -0.028 -1.730 0.251 1.748 sum 3.233 23.097 0.961 23.342 Atomic orbital electron populations 1.22211 0.79553 1.04268 1.01636 1.47771 1.07083 1.05690 1.71185 1.18271 0.87048 0.83401 0.77062 1.90770 1.13288 1.87115 1.49943 1.20373 0.95013 0.94786 0.98474 1.22837 0.94453 1.00205 1.00110 1.22757 0.99623 0.87970 0.95328 1.67248 1.11434 1.32051 1.06961 1.20282 0.90344 0.92994 0.94655 1.20759 0.92774 0.96987 1.02262 1.23143 0.94895 1.02608 1.00479 1.22975 1.01952 0.97063 0.97834 1.22034 1.01135 0.92018 0.98669 1.22717 0.97343 0.79814 0.98968 1.23953 1.01955 0.97209 0.97197 1.21332 0.93835 0.87276 0.91831 1.42352 1.18394 1.05156 1.68785 1.19308 1.01993 0.85095 1.31225 0.90968 1.24771 0.96649 0.98333 1.01086 1.69654 1.08128 1.33747 1.46494 0.86174 0.77375 0.84747 0.77786 1.21659 1.21747 1.20679 1.24349 1.01068 0.96417 0.99759 0.91919 0.90844 0.89470 0.83040 0.81902 0.85839 0.88019 0.87793 0.88014 0.88635 0.83792 0.86601 0.91609 0.90006 0.90145 0.78107 0.93417 0.89777 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 7.55 59.84 0.45 1.15 16 2 N -0.59 -7.85 3.08 -174.01 -0.54 -8.38 16 3 C 0.55 7.93 7.44 -12.19 -0.09 7.84 16 4 O -0.53 -9.27 16.38 5.35 0.09 -9.18 16 5 C -0.08 -0.89 5.34 -104.65 -0.56 -1.45 16 6 C -0.16 -1.48 7.68 -39.03 -0.30 -1.78 16 7 C 0.10 0.91 11.17 -17.60 -0.20 0.71 16 8 N -0.47 -5.10 10.25 -9.52 -0.10 -5.20 16 9 C 0.15 1.64 6.46 -82.63 -0.53 1.10 16 10 C -0.11 -0.91 6.22 -91.78 -0.57 -1.48 16 11 C -0.17 -1.21 9.79 -26.73 -0.26 -1.47 16 12 C -0.16 -1.15 10.23 -26.73 -0.27 -1.42 16 13 C -0.12 -1.33 8.97 -39.02 -0.35 -1.68 16 14 C 0.11 1.71 4.22 -67.12 -0.28 1.43 16 15 C -0.16 -2.62 7.35 -25.92 -0.19 -2.81 16 16 C 0.17 3.21 4.48 -67.11 -0.30 2.91 16 17 N -0.71 -16.97 5.40 -52.64 -0.28 -17.26 16 18 C -0.25 -6.59 9.97 -15.06 -0.15 -6.74 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 22 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.17 -2.83 7.28 -25.92 -0.19 -3.02 16 27 H 0.06 0.56 6.81 -51.93 -0.35 0.21 16 28 H 0.07 0.68 5.83 -51.93 -0.30 0.37 16 29 H 0.09 1.02 6.13 -51.93 -0.32 0.70 16 30 H 0.15 1.16 5.08 -52.49 -0.27 0.90 16 31 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.10 0.76 6.38 -51.93 -0.33 0.43 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.14 1.56 6.24 -52.49 -0.33 1.23 16 38 H 0.12 1.82 7.22 -51.93 -0.37 1.44 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.32 6.98 -51.93 -0.36 0.96 16 41 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 42 H 0.38 9.71 7.92 -40.82 -0.32 9.39 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.08 1.39 6.60 -51.93 -0.34 1.05 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 365.04 15.07 5.50 5.50 Total: -1.00 -32.06 365.04 -9.75 -41.81 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.23 Total: 9.58 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -3.89 Total: -7.15 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.19 Total: -57.44 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.06 -9.75 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999062331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.392 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds