Wall clock time and date at job start Tue Mar 31 2020 11:06:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.34782 * 120.00004 * 2 1
4 4 O 1.21281 * 120.00010 * 185.30862 * 3 2 1
5 5 C 1.50698 * 119.99767 * 5.31193 * 3 2 1
6 6 C 1.50697 * 115.55019 * 67.04859 * 5 3 2
7 7 C 1.38666 * 120.41976 * 29.59439 * 6 5 3
8 8 C 1.38635 * 118.42086 * 180.02562 * 7 6 5
9 9 C 1.38215 * 119.16186 * 359.97438 * 8 7 6
10 10 N 1.31855 * 120.76482 * 0.02562 * 9 8 7
11 11 C 1.31886 * 121.72358 * 0.02562 * 10 9 8
12 12 C 1.52999 * 117.51496 * 212.74367 * 5 3 2
13 13 C 1.52999 * 117.50070 * 281.37517 * 5 3 2
14 14 C 1.46501 * 119.99888 * 180.02562 * 2 1 3
15 15 C 1.53777 * 113.61678 * 39.13684 * 14 2 1
16 16 C 1.53963 * 87.01667 * 220.04948 * 15 14 2
17 17 N 1.46502 * 113.74143 * 139.94372 * 16 15 14
18 18 C 1.36941 * 119.99990 * 107.40180 * 17 16 15
19 19 H 1.08001 * 119.99840 * 359.97438 * 18 17 16
20 20 C 1.38810 * 119.99850 * 180.02562 * 18 17 16
21 21 N 1.31617 * 120.00233 * 359.97438 * 20 18 17
22 22 Si 1.86803 * 119.99700 * 179.97438 * 20 18 17
23 23 H 1.48501 * 109.47030 * 89.99819 * 22 20 18
24 24 H 1.48506 * 109.46988 * 209.99688 * 22 20 18
25 25 H 1.48494 * 109.47158 * 329.99944 * 22 20 18
26 26 C 1.53778 * 87.11236 * 25.35922 * 16 15 14
27 27 H 1.08997 * 109.46855 * 84.66886 * 1 2 3
28 28 H 1.09004 * 109.47251 * 204.66927 * 1 2 3
29 29 H 1.09001 * 109.46946 * 324.66642 * 1 2 3
30 30 H 1.08000 * 120.78990 * 359.75263 * 7 6 5
31 31 H 1.08001 * 120.41918 * 179.97438 * 8 7 6
32 32 H 1.08001 * 119.62278 * 180.02562 * 9 8 7
33 33 H 1.08001 * 119.61153 * 179.97438 * 11 10 9
34 34 H 1.08999 * 117.50068 * 214.96981 * 12 5 3
35 35 H 1.09003 * 117.50001 * 359.97438 * 12 5 3
36 36 H 1.09003 * 117.49280 * 359.97438 * 13 5 3
37 37 H 1.08994 * 117.49864 * 145.00004 * 13 5 3
38 38 H 1.09008 * 112.84800 * 170.33570 * 14 2 1
39 39 H 1.09000 * 113.61292 * 334.56015 * 15 14 2
40 40 H 1.08996 * 113.61928 * 105.47012 * 15 14 2
41 41 H 1.09003 * 113.53574 * 270.80429 * 16 15 14
42 42 H 0.96997 * 119.99701 * 287.39873 * 17 16 15
43 43 H 0.96998 * 120.00058 * 180.02562 * 21 20 18
44 44 H 1.09000 * 113.61455 * 220.08689 * 26 16 15
45 45 H 1.09004 * 113.68530 * 89.19767 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 3.3478 1.1695 -0.0972
5 6 1.3902 2.4695 0.1208
6 6 0.7095 2.7075 1.4441
7 6 1.2288 2.1629 2.6088
8 6 0.5689 2.4078 3.8031
9 6 -0.5763 3.1816 3.7934
10 7 -1.0416 3.6836 2.6664
11 6 -0.4406 3.4705 1.5120
12 6 1.9665 3.6862 -0.6061
13 6 0.7012 3.0075 -1.1349
14 6 2.1975 -1.2688 -0.0006
15 6 1.5590 -2.3483 -0.8904
16 6 1.9074 -3.3558 0.2205
17 7 0.8613 -4.3526 0.4620
18 6 1.0451 -5.6490 0.0607
19 1 1.9610 -5.9364 -0.4342
20 6 0.0536 -6.5933 0.2891
21 7 -1.0628 -6.2429 0.8917
22 14 0.3040 -8.3615 -0.2590
23 1 0.9448 -9.1331 0.8361
24 1 -1.0106 -8.9684 -0.5887
25 1 1.1769 -8.3886 -1.4600
26 6 1.8675 -2.1711 1.2001
27 1 -0.3633 0.0955 -1.0232
28 1 -0.3634 -0.9339 0.4289
29 1 -0.3633 0.8384 0.5943
30 1 2.1236 1.5585 2.5854
31 1 0.9448 1.9990 4.7294
32 1 -1.0961 3.3775 4.7196
33 1 -0.8516 3.8979 0.6094
34 1 1.8531 4.6588 -0.1273
35 1 2.8876 3.5450 -1.1716
36 1 0.7899 2.4196 -2.0485
37 1 -0.2443 3.5335 -1.0039
38 1 3.2667 -1.1401 -0.1691
39 1 0.4874 -2.2147 -1.0381
40 1 2.0975 -2.5208 -1.8222
41 1 2.8973 -3.7990 0.1114
42 1 0.0386 -4.0944 0.9062
43 1 -1.7554 -6.9029 1.0516
44 1 2.6546 -2.2008 1.9535
45 1 0.8808 -1.9879 1.6258
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000999291785.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:06:24
Heat of formation + Delta-G solvation = 71.241117 kcal
Electronic energy + Delta-G solvation = -26333.227985 eV
Core-core repulsion = 22739.001741 eV
Total energy + Delta-G solvation = -3594.226244 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.20506 -39.86475 -38.40514 -36.67691 -34.78649 -33.09433 -32.66822 -31.12694
-30.01339 -27.01656 -25.97834 -25.15947 -24.34387 -23.92844 -23.17555 -22.53076
-21.31331 -19.11758 -18.81350 -17.81339 -17.13280 -17.07647 -16.57656 -16.23281
-15.63217 -14.99467 -14.91723 -14.62446 -14.54488 -14.18783 -14.02138 -13.34820
-13.19620 -13.09263 -12.93763 -12.75294 -12.34286 -12.20717 -12.10305 -11.87184
-11.76568 -11.34991 -11.24600 -10.99732 -10.92582 -10.59583 -10.49786 -10.31580
-10.08919 -10.00601 -9.93082 -9.66586 -9.49078 -9.09433 -8.93440 -8.48508
-7.02873 -5.83701 -3.12820 0.76522 1.00262 2.43411 2.91070 3.28901
3.39986 3.45697 3.46973 3.68842 3.99872 4.24403 4.27967 4.44806
4.54906 4.55885 4.67817 4.71033 4.94840 5.06051 5.07951 5.16445
5.19470 5.24028 5.31179 5.40315 5.42154 5.50520 5.54361 5.55602
5.75349 5.77484 5.81660 5.86184 5.92318 5.96733 6.09998 6.24046
6.28233 6.37849 6.40363 6.51936 6.74661 6.98563 7.45360 7.65409
7.67462 8.12647 8.34607 9.46108 10.02251 10.36914 11.38623
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.018474 B = 0.003078 C = 0.002842
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1515.242739 B = 9095.928838 C = 9849.943893
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.076 3.924
2 N -0.588 5.588
3 C 0.551 3.449
4 O -0.539 6.539
5 C -0.118 4.118
6 C -0.089 4.089
7 C -0.063 4.063
8 C -0.163 4.163
9 C 0.094 3.906
10 N -0.479 5.479
11 C 0.100 3.900
12 C -0.133 4.133
13 C -0.155 4.155
14 C 0.114 3.886
15 C -0.174 4.174
16 C 0.170 3.830
17 N -0.709 5.709
18 C -0.245 4.245
19 H 0.072 0.928
20 C -0.011 4.011
21 N -0.932 5.932
22 Si 0.907 3.093
23 H -0.289 1.289
24 H -0.291 1.291
25 H -0.281 1.281
26 C -0.162 4.162
27 H 0.057 0.943
28 H 0.082 0.918
29 H 0.067 0.933
30 H 0.133 0.867
31 H 0.138 0.862
32 H 0.157 0.843
33 H 0.156 0.844
34 H 0.104 0.896
35 H 0.109 0.891
36 H 0.106 0.894
37 H 0.109 0.891
38 H 0.114 0.886
39 H 0.083 0.917
40 H 0.060 0.940
41 H 0.079 0.921
42 H 0.385 0.615
43 H 0.256 0.744
44 H 0.063 0.937
45 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.104 22.134 0.986 22.255
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.318 5.318
3 C 0.338 3.662
4 O -0.417 6.417
5 C -0.122 4.122
6 C -0.091 4.091
7 C -0.089 4.089
8 C -0.183 4.183
9 C -0.063 4.063
10 N -0.187 5.187
11 C -0.057 4.057
12 C -0.170 4.170
13 C -0.192 4.192
14 C 0.011 3.989
15 C -0.216 4.216
16 C 0.057 3.943
17 N -0.347 5.347
18 C -0.376 4.376
19 H 0.090 0.910
20 C -0.207 4.207
21 N -0.580 5.580
22 Si 0.738 3.262
23 H -0.216 1.216
24 H -0.217 1.217
25 H -0.207 1.207
26 C -0.202 4.202
27 H 0.076 0.924
28 H 0.100 0.900
29 H 0.085 0.915
30 H 0.150 0.850
31 H 0.156 0.844
32 H 0.174 0.826
33 H 0.173 0.827
34 H 0.123 0.877
35 H 0.127 0.873
36 H 0.124 0.876
37 H 0.127 0.873
38 H 0.132 0.868
39 H 0.101 0.899
40 H 0.079 0.921
41 H 0.097 0.903
42 H 0.219 0.781
43 H 0.066 0.934
44 H 0.082 0.918
45 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 2.004 22.407 0.906 22.515
hybrid contribution 0.433 -1.519 -0.069 1.581
sum 2.438 20.888 0.838 21.046
Atomic orbital electron populations
1.21826 0.79393 1.03589 1.01890 1.47769 1.07046 1.05520 1.71492
1.19286 0.86949 0.83831 0.76166 1.90685 1.13885 1.87052 1.50043
1.20015 1.04921 0.95083 0.92191 1.19718 0.96589 0.99784 0.93017
1.21475 0.99030 0.96624 0.91734 1.22172 0.97069 0.99988 0.99052
1.22806 0.93523 0.93396 0.96566 1.67740 1.31675 1.20722 0.98588
1.22630 0.91513 0.95343 0.96262 1.23099 0.98224 0.94624 1.01079
1.23214 0.97572 1.02863 0.95567 1.22666 0.97262 0.80193 0.98741
1.24348 1.01107 0.96677 0.99469 1.21363 0.93787 0.87232 0.91896
1.42347 1.17149 1.05591 1.69610 1.19311 1.01267 0.85517 1.31546
0.90991 1.24758 0.96477 0.98310 1.01197 1.69653 1.07288 1.33714
1.47381 0.86186 0.76832 0.84917 0.78233 1.21647 1.21740 1.20679
1.23928 1.01780 0.97246 0.97281 0.92407 0.89964 0.91458 0.84955
0.84440 0.82570 0.82652 0.87734 0.87252 0.87581 0.87313 0.86806
0.89878 0.92107 0.90259 0.78125 0.93422 0.91777 0.90090
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.90 8.74 59.85 0.52 1.42 16
2 N -0.59 -7.90 3.08 -173.00 -0.53 -8.43 16
3 C 0.55 7.54 5.81 -10.98 -0.06 7.48 16
4 O -0.54 -9.14 16.21 5.56 0.09 -9.05 16
5 C -0.12 -1.23 1.37 -156.82 -0.21 -1.44 16
6 C -0.09 -0.91 3.63 -104.49 -0.38 -1.29 16
7 C -0.06 -0.67 9.44 -39.28 -0.37 -1.04 16
8 C -0.16 -1.50 10.11 -39.44 -0.40 -1.89 16
9 C 0.09 0.87 11.18 -17.55 -0.20 0.67 16
10 N -0.48 -5.13 10.36 -13.26 -0.14 -5.26 16
11 C 0.10 0.95 10.49 -17.55 -0.18 0.77 16
12 C -0.13 -1.16 9.74 -26.73 -0.26 -1.42 16
13 C -0.16 -1.21 9.37 -26.73 -0.25 -1.46 16
14 C 0.11 1.73 4.22 -67.12 -0.28 1.45 16
15 C -0.17 -2.91 7.31 -25.83 -0.19 -3.10 16
16 C 0.17 3.26 4.48 -67.02 -0.30 2.96 16
17 N -0.71 -17.21 5.41 -52.54 -0.28 -17.50 16
18 C -0.25 -6.66 9.97 -15.06 -0.15 -6.81 16
19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16
20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16
21 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16
22 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16
23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16
26 C -0.16 -2.63 7.34 -25.92 -0.19 -2.82 16
27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
28 H 0.08 1.07 6.13 -51.93 -0.32 0.75 16
29 H 0.07 0.72 5.45 -51.93 -0.28 0.44 16
30 H 0.13 1.53 7.42 -52.49 -0.39 1.14 16
31 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16
32 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16
33 H 0.16 1.14 5.97 -52.49 -0.31 0.83 16
34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16
35 H 0.11 1.05 8.03 -51.93 -0.42 0.63 16
36 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16
37 H 0.11 0.62 6.13 -51.93 -0.32 0.30 16
38 H 0.11 1.81 7.20 -51.92 -0.37 1.43 16
39 H 0.08 1.44 6.69 -51.93 -0.35 1.09 16
40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
41 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16
42 H 0.38 9.87 7.93 -40.82 -0.32 9.54 16
43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
45 H 0.08 1.34 6.87 -51.93 -0.36 0.98 16
LS Contribution 366.60 15.07 5.52 5.52
Total: -1.00 -32.04 366.60 -9.01 -41.05
By element:
Atomic # 1 Polarization: 16.79 SS G_CDS: -6.37 Total: 10.43 kcal
Atomic # 6 Polarization: -3.93 SS G_CDS: -3.00 Total: -6.94 kcal
Atomic # 7 Polarization: -57.79 SS G_CDS: -0.23 Total: -58.02 kcal
Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -32.04 -9.01 -41.05 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999291785.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.296 kcal
(2) G-P(sol) polarization free energy of solvation -32.045 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.251 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.241 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds