Wall clock time and date at job start Tue Mar 31 2020 11:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34782 * 120.00004 * 2 1 4 4 O 1.21281 * 120.00010 * 185.30862 * 3 2 1 5 5 C 1.50698 * 119.99767 * 5.31193 * 3 2 1 6 6 C 1.50697 * 115.55019 * 67.04859 * 5 3 2 7 7 C 1.38666 * 120.41976 * 29.59439 * 6 5 3 8 8 C 1.38635 * 118.42086 * 180.02562 * 7 6 5 9 9 C 1.38215 * 119.16186 * 359.97438 * 8 7 6 10 10 N 1.31855 * 120.76482 * 0.02562 * 9 8 7 11 11 C 1.31886 * 121.72358 * 0.02562 * 10 9 8 12 12 C 1.52999 * 117.51496 * 212.74367 * 5 3 2 13 13 C 1.52999 * 117.50070 * 281.37517 * 5 3 2 14 14 C 1.46501 * 119.99888 * 180.02562 * 2 1 3 15 15 C 1.53777 * 113.61678 * 39.13684 * 14 2 1 16 16 C 1.53963 * 87.01667 * 220.04948 * 15 14 2 17 17 N 1.46502 * 113.74143 * 139.94372 * 16 15 14 18 18 C 1.36941 * 119.99990 * 107.40180 * 17 16 15 19 19 H 1.08001 * 119.99840 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99850 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00233 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99700 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47030 * 89.99819 * 22 20 18 24 24 H 1.48506 * 109.46988 * 209.99688 * 22 20 18 25 25 H 1.48494 * 109.47158 * 329.99944 * 22 20 18 26 26 C 1.53778 * 87.11236 * 25.35922 * 16 15 14 27 27 H 1.08997 * 109.46855 * 84.66886 * 1 2 3 28 28 H 1.09004 * 109.47251 * 204.66927 * 1 2 3 29 29 H 1.09001 * 109.46946 * 324.66642 * 1 2 3 30 30 H 1.08000 * 120.78990 * 359.75263 * 7 6 5 31 31 H 1.08001 * 120.41918 * 179.97438 * 8 7 6 32 32 H 1.08001 * 119.62278 * 180.02562 * 9 8 7 33 33 H 1.08001 * 119.61153 * 179.97438 * 11 10 9 34 34 H 1.08999 * 117.50068 * 214.96981 * 12 5 3 35 35 H 1.09003 * 117.50001 * 359.97438 * 12 5 3 36 36 H 1.09003 * 117.49280 * 359.97438 * 13 5 3 37 37 H 1.08994 * 117.49864 * 145.00004 * 13 5 3 38 38 H 1.09008 * 112.84800 * 170.33570 * 14 2 1 39 39 H 1.09000 * 113.61292 * 334.56015 * 15 14 2 40 40 H 1.08996 * 113.61928 * 105.47012 * 15 14 2 41 41 H 1.09003 * 113.53574 * 270.80429 * 16 15 14 42 42 H 0.96997 * 119.99701 * 287.39873 * 17 16 15 43 43 H 0.96998 * 120.00058 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.61455 * 220.08689 * 26 16 15 45 45 H 1.09004 * 113.68530 * 89.19767 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3478 1.1695 -0.0972 5 6 1.3902 2.4695 0.1208 6 6 0.7095 2.7075 1.4441 7 6 1.2288 2.1629 2.6088 8 6 0.5689 2.4078 3.8031 9 6 -0.5763 3.1816 3.7934 10 7 -1.0416 3.6836 2.6664 11 6 -0.4406 3.4705 1.5120 12 6 1.9665 3.6862 -0.6061 13 6 0.7012 3.0075 -1.1349 14 6 2.1975 -1.2688 -0.0006 15 6 1.5590 -2.3483 -0.8904 16 6 1.9074 -3.3558 0.2205 17 7 0.8613 -4.3526 0.4620 18 6 1.0451 -5.6490 0.0607 19 1 1.9610 -5.9364 -0.4342 20 6 0.0536 -6.5933 0.2891 21 7 -1.0628 -6.2429 0.8917 22 14 0.3040 -8.3615 -0.2590 23 1 0.9448 -9.1331 0.8361 24 1 -1.0106 -8.9684 -0.5887 25 1 1.1769 -8.3886 -1.4600 26 6 1.8675 -2.1711 1.2001 27 1 -0.3633 0.0955 -1.0232 28 1 -0.3634 -0.9339 0.4289 29 1 -0.3633 0.8384 0.5943 30 1 2.1236 1.5585 2.5854 31 1 0.9448 1.9990 4.7294 32 1 -1.0961 3.3775 4.7196 33 1 -0.8516 3.8979 0.6094 34 1 1.8531 4.6588 -0.1273 35 1 2.8876 3.5450 -1.1716 36 1 0.7899 2.4196 -2.0485 37 1 -0.2443 3.5335 -1.0039 38 1 3.2667 -1.1401 -0.1691 39 1 0.4874 -2.2147 -1.0381 40 1 2.0975 -2.5208 -1.8222 41 1 2.8973 -3.7990 0.1114 42 1 0.0386 -4.0944 0.9062 43 1 -1.7554 -6.9029 1.0516 44 1 2.6546 -2.2008 1.9535 45 1 0.8808 -1.9879 1.6258 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999291785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:24 Heat of formation + Delta-G solvation = 71.241117 kcal Electronic energy + Delta-G solvation = -26333.227985 eV Core-core repulsion = 22739.001741 eV Total energy + Delta-G solvation = -3594.226244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.20506 -39.86475 -38.40514 -36.67691 -34.78649 -33.09433 -32.66822 -31.12694 -30.01339 -27.01656 -25.97834 -25.15947 -24.34387 -23.92844 -23.17555 -22.53076 -21.31331 -19.11758 -18.81350 -17.81339 -17.13280 -17.07647 -16.57656 -16.23281 -15.63217 -14.99467 -14.91723 -14.62446 -14.54488 -14.18783 -14.02138 -13.34820 -13.19620 -13.09263 -12.93763 -12.75294 -12.34286 -12.20717 -12.10305 -11.87184 -11.76568 -11.34991 -11.24600 -10.99732 -10.92582 -10.59583 -10.49786 -10.31580 -10.08919 -10.00601 -9.93082 -9.66586 -9.49078 -9.09433 -8.93440 -8.48508 -7.02873 -5.83701 -3.12820 0.76522 1.00262 2.43411 2.91070 3.28901 3.39986 3.45697 3.46973 3.68842 3.99872 4.24403 4.27967 4.44806 4.54906 4.55885 4.67817 4.71033 4.94840 5.06051 5.07951 5.16445 5.19470 5.24028 5.31179 5.40315 5.42154 5.50520 5.54361 5.55602 5.75349 5.77484 5.81660 5.86184 5.92318 5.96733 6.09998 6.24046 6.28233 6.37849 6.40363 6.51936 6.74661 6.98563 7.45360 7.65409 7.67462 8.12647 8.34607 9.46108 10.02251 10.36914 11.38623 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.003078 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.242739 B = 9095.928838 C = 9849.943893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.588 5.588 3 C 0.551 3.449 4 O -0.539 6.539 5 C -0.118 4.118 6 C -0.089 4.089 7 C -0.063 4.063 8 C -0.163 4.163 9 C 0.094 3.906 10 N -0.479 5.479 11 C 0.100 3.900 12 C -0.133 4.133 13 C -0.155 4.155 14 C 0.114 3.886 15 C -0.174 4.174 16 C 0.170 3.830 17 N -0.709 5.709 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.162 4.162 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.063 0.937 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.104 22.134 0.986 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.318 5.318 3 C 0.338 3.662 4 O -0.417 6.417 5 C -0.122 4.122 6 C -0.091 4.091 7 C -0.089 4.089 8 C -0.183 4.183 9 C -0.063 4.063 10 N -0.187 5.187 11 C -0.057 4.057 12 C -0.170 4.170 13 C -0.192 4.192 14 C 0.011 3.989 15 C -0.216 4.216 16 C 0.057 3.943 17 N -0.347 5.347 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.202 4.202 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.004 22.407 0.906 22.515 hybrid contribution 0.433 -1.519 -0.069 1.581 sum 2.438 20.888 0.838 21.046 Atomic orbital electron populations 1.21826 0.79393 1.03589 1.01890 1.47769 1.07046 1.05520 1.71492 1.19286 0.86949 0.83831 0.76166 1.90685 1.13885 1.87052 1.50043 1.20015 1.04921 0.95083 0.92191 1.19718 0.96589 0.99784 0.93017 1.21475 0.99030 0.96624 0.91734 1.22172 0.97069 0.99988 0.99052 1.22806 0.93523 0.93396 0.96566 1.67740 1.31675 1.20722 0.98588 1.22630 0.91513 0.95343 0.96262 1.23099 0.98224 0.94624 1.01079 1.23214 0.97572 1.02863 0.95567 1.22666 0.97262 0.80193 0.98741 1.24348 1.01107 0.96677 0.99469 1.21363 0.93787 0.87232 0.91896 1.42347 1.17149 1.05591 1.69610 1.19311 1.01267 0.85517 1.31546 0.90991 1.24758 0.96477 0.98310 1.01197 1.69653 1.07288 1.33714 1.47381 0.86186 0.76832 0.84917 0.78233 1.21647 1.21740 1.20679 1.23928 1.01780 0.97246 0.97281 0.92407 0.89964 0.91458 0.84955 0.84440 0.82570 0.82652 0.87734 0.87252 0.87581 0.87313 0.86806 0.89878 0.92107 0.90259 0.78125 0.93422 0.91777 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 8.74 59.85 0.52 1.42 16 2 N -0.59 -7.90 3.08 -173.00 -0.53 -8.43 16 3 C 0.55 7.54 5.81 -10.98 -0.06 7.48 16 4 O -0.54 -9.14 16.21 5.56 0.09 -9.05 16 5 C -0.12 -1.23 1.37 -156.82 -0.21 -1.44 16 6 C -0.09 -0.91 3.63 -104.49 -0.38 -1.29 16 7 C -0.06 -0.67 9.44 -39.28 -0.37 -1.04 16 8 C -0.16 -1.50 10.11 -39.44 -0.40 -1.89 16 9 C 0.09 0.87 11.18 -17.55 -0.20 0.67 16 10 N -0.48 -5.13 10.36 -13.26 -0.14 -5.26 16 11 C 0.10 0.95 10.49 -17.55 -0.18 0.77 16 12 C -0.13 -1.16 9.74 -26.73 -0.26 -1.42 16 13 C -0.16 -1.21 9.37 -26.73 -0.25 -1.46 16 14 C 0.11 1.73 4.22 -67.12 -0.28 1.45 16 15 C -0.17 -2.91 7.31 -25.83 -0.19 -3.10 16 16 C 0.17 3.26 4.48 -67.02 -0.30 2.96 16 17 N -0.71 -17.21 5.41 -52.54 -0.28 -17.50 16 18 C -0.25 -6.66 9.97 -15.06 -0.15 -6.81 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 22 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 C -0.16 -2.63 7.34 -25.92 -0.19 -2.82 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.07 6.13 -51.93 -0.32 0.75 16 29 H 0.07 0.72 5.45 -51.93 -0.28 0.44 16 30 H 0.13 1.53 7.42 -52.49 -0.39 1.14 16 31 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.16 1.14 5.97 -52.49 -0.31 0.83 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.11 1.05 8.03 -51.93 -0.42 0.63 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.11 0.62 6.13 -51.93 -0.32 0.30 16 38 H 0.11 1.81 7.20 -51.92 -0.37 1.43 16 39 H 0.08 1.44 6.69 -51.93 -0.35 1.09 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 42 H 0.38 9.87 7.93 -40.82 -0.32 9.54 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.08 1.34 6.87 -51.93 -0.36 0.98 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -32.04 366.60 -9.01 -41.05 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -6.37 Total: 10.43 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -3.00 Total: -6.94 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.23 Total: -58.02 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.04 -9.01 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999291785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.296 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds