Wall clock time and date at job start Tue Mar 31 2020 11:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34782 * 120.00004 * 2 1 4 4 O 1.21281 * 120.00010 * 185.30862 * 3 2 1 5 5 C 1.50698 * 119.99767 * 5.31193 * 3 2 1 6 6 C 1.50697 * 115.55019 * 67.04859 * 5 3 2 7 7 C 1.38666 * 120.41976 * 29.59439 * 6 5 3 8 8 C 1.38635 * 118.42086 * 180.02562 * 7 6 5 9 9 C 1.38215 * 119.16186 * 359.97438 * 8 7 6 10 10 N 1.31855 * 120.76482 * 0.02562 * 9 8 7 11 11 C 1.31886 * 121.72358 * 0.02562 * 10 9 8 12 12 C 1.52999 * 117.51496 * 212.74367 * 5 3 2 13 13 C 1.52999 * 117.50070 * 281.37517 * 5 3 2 14 14 C 1.46501 * 119.99888 * 180.02562 * 2 1 3 15 15 C 1.53777 * 113.61678 * 39.13684 * 14 2 1 16 16 C 1.53963 * 87.01667 * 220.04948 * 15 14 2 17 17 N 1.46502 * 113.74143 * 139.94372 * 16 15 14 18 18 C 1.36941 * 119.99990 * 107.40180 * 17 16 15 19 19 H 1.08001 * 119.99840 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99850 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00233 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99700 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47030 * 89.99819 * 22 20 18 24 24 H 1.48506 * 109.46988 * 209.99688 * 22 20 18 25 25 H 1.48494 * 109.47158 * 329.99944 * 22 20 18 26 26 C 1.53778 * 87.11236 * 25.35922 * 16 15 14 27 27 H 1.08997 * 109.46855 * 84.66886 * 1 2 3 28 28 H 1.09004 * 109.47251 * 204.66927 * 1 2 3 29 29 H 1.09001 * 109.46946 * 324.66642 * 1 2 3 30 30 H 1.08000 * 120.78990 * 359.75263 * 7 6 5 31 31 H 1.08001 * 120.41918 * 179.97438 * 8 7 6 32 32 H 1.08001 * 119.62278 * 180.02562 * 9 8 7 33 33 H 1.08001 * 119.61153 * 179.97438 * 11 10 9 34 34 H 1.08999 * 117.50068 * 214.96981 * 12 5 3 35 35 H 1.09003 * 117.50001 * 359.97438 * 12 5 3 36 36 H 1.09003 * 117.49280 * 359.97438 * 13 5 3 37 37 H 1.08994 * 117.49864 * 145.00004 * 13 5 3 38 38 H 1.09008 * 112.84800 * 170.33570 * 14 2 1 39 39 H 1.09000 * 113.61292 * 334.56015 * 15 14 2 40 40 H 1.08996 * 113.61928 * 105.47012 * 15 14 2 41 41 H 1.09003 * 113.53574 * 270.80429 * 16 15 14 42 42 H 0.96997 * 119.99701 * 287.39873 * 17 16 15 43 43 H 0.96998 * 120.00058 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.61455 * 220.08689 * 26 16 15 45 45 H 1.09004 * 113.68530 * 89.19767 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3478 1.1695 -0.0972 5 6 1.3902 2.4695 0.1208 6 6 0.7095 2.7075 1.4441 7 6 1.2288 2.1629 2.6088 8 6 0.5689 2.4078 3.8031 9 6 -0.5763 3.1816 3.7934 10 7 -1.0416 3.6836 2.6664 11 6 -0.4406 3.4705 1.5120 12 6 1.9665 3.6862 -0.6061 13 6 0.7012 3.0075 -1.1349 14 6 2.1975 -1.2688 -0.0006 15 6 1.5590 -2.3483 -0.8904 16 6 1.9074 -3.3558 0.2205 17 7 0.8613 -4.3526 0.4620 18 6 1.0451 -5.6490 0.0607 19 1 1.9610 -5.9364 -0.4342 20 6 0.0536 -6.5933 0.2891 21 7 -1.0628 -6.2429 0.8917 22 14 0.3040 -8.3615 -0.2590 23 1 0.9448 -9.1331 0.8361 24 1 -1.0106 -8.9684 -0.5887 25 1 1.1769 -8.3886 -1.4600 26 6 1.8675 -2.1711 1.2001 27 1 -0.3633 0.0955 -1.0232 28 1 -0.3634 -0.9339 0.4289 29 1 -0.3633 0.8384 0.5943 30 1 2.1236 1.5585 2.5854 31 1 0.9448 1.9990 4.7294 32 1 -1.0961 3.3775 4.7196 33 1 -0.8516 3.8979 0.6094 34 1 1.8531 4.6588 -0.1273 35 1 2.8876 3.5450 -1.1716 36 1 0.7899 2.4196 -2.0485 37 1 -0.2443 3.5335 -1.0039 38 1 3.2667 -1.1401 -0.1691 39 1 0.4874 -2.2147 -1.0381 40 1 2.0975 -2.5208 -1.8222 41 1 2.8973 -3.7990 0.1114 42 1 0.0386 -4.0944 0.9062 43 1 -1.7554 -6.9029 1.0516 44 1 2.6546 -2.2008 1.9535 45 1 0.8808 -1.9879 1.6258 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999291785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:23 Heat of formation + Delta-G solvation = 51.901710 kcal Electronic energy + Delta-G solvation = -26334.066605 eV Core-core repulsion = 22739.001741 eV Total energy + Delta-G solvation = -3595.064863 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.09278 -40.86619 -39.62069 -37.59481 -36.22135 -34.81000 -33.42738 -31.95387 -31.80339 -28.08533 -27.13918 -26.53986 -25.88293 -24.67267 -24.36016 -23.22120 -22.52540 -20.46496 -19.94856 -19.06107 -18.62792 -18.06932 -17.63676 -17.08286 -16.61988 -16.42647 -16.04662 -15.81195 -15.67735 -15.28086 -14.97224 -14.89317 -14.48336 -14.18845 -13.94189 -13.77973 -13.52751 -13.31645 -13.24011 -13.14913 -12.98723 -12.80660 -12.40538 -12.28129 -12.16768 -12.10386 -11.97223 -11.73590 -11.67344 -11.42894 -10.98233 -10.88723 -10.71972 -10.36707 -9.81530 -9.65421 -9.00692 -7.95877 -5.24298 0.05963 0.25157 1.39232 1.48185 1.48873 1.57354 1.86625 2.55629 2.56984 2.96298 3.29763 3.33521 3.35907 3.60822 3.70255 3.71888 3.78932 3.87516 3.91146 3.92547 4.02068 4.13763 4.24920 4.26353 4.28536 4.45367 4.57664 4.60629 4.67262 4.73261 4.76874 4.84215 4.86803 4.90018 4.93051 5.04399 5.10259 5.12098 5.14305 5.25582 5.39347 5.50123 5.61310 5.69249 6.25985 6.35141 6.96633 7.04011 7.32941 8.07200 8.31358 9.27181 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.003078 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.242739 B = 9095.928838 C = 9849.943893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.587 5.587 3 C 0.550 3.450 4 O -0.578 6.578 5 C -0.133 4.133 6 C -0.090 4.090 7 C -0.082 4.082 8 C -0.164 4.164 9 C 0.089 3.911 10 N -0.498 5.498 11 C 0.100 3.900 12 C -0.131 4.131 13 C -0.134 4.134 14 C 0.130 3.870 15 C -0.160 4.160 16 C 0.153 3.847 17 N -0.722 5.722 18 C -0.246 4.246 19 H 0.076 0.924 20 C -0.072 4.072 21 N -0.968 5.968 22 Si 0.970 3.030 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.270 1.270 26 C -0.148 4.148 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.155 0.845 32 H 0.181 0.819 33 H 0.180 0.820 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.070 0.930 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 23.637 0.513 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.317 5.317 3 C 0.339 3.661 4 O -0.457 6.457 5 C -0.137 4.137 6 C -0.092 4.092 7 C -0.108 4.108 8 C -0.183 4.183 9 C -0.067 4.067 10 N -0.206 5.206 11 C -0.057 4.057 12 C -0.168 4.168 13 C -0.171 4.171 14 C 0.026 3.974 15 C -0.202 4.202 16 C 0.043 3.957 17 N -0.359 5.359 18 C -0.378 4.378 19 H 0.094 0.906 20 C -0.264 4.264 21 N -0.618 5.618 22 Si 0.799 3.201 23 H -0.215 1.215 24 H -0.222 1.222 25 H -0.195 1.195 26 C -0.188 4.188 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.134 0.866 31 H 0.173 0.827 32 H 0.198 0.802 33 H 0.197 0.803 34 H 0.140 0.860 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.155 0.845 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.615 23.948 0.417 24.006 hybrid contribution 0.638 -1.915 0.098 2.021 sum 2.254 22.034 0.514 22.155 Atomic orbital electron populations 1.21898 0.78138 1.03407 1.02988 1.47765 1.07711 1.04938 1.71288 1.19832 0.86640 0.84759 0.74863 1.90662 1.15677 1.87686 1.51723 1.19895 1.06368 0.93778 0.93614 1.19695 0.96871 1.00139 0.92536 1.21516 0.99040 0.97350 0.92899 1.22379 0.96937 0.99734 0.99265 1.23229 0.93471 0.92793 0.97220 1.67796 1.32238 1.21325 0.99241 1.22943 0.90944 0.94898 0.96869 1.23169 0.98358 0.94671 1.00619 1.23378 0.98273 1.01566 0.93873 1.22314 0.97037 0.80879 0.97171 1.24110 1.01046 0.96083 0.98941 1.21652 0.92519 0.87282 0.94274 1.42476 1.17890 1.05724 1.69851 1.19689 1.01030 0.86797 1.30234 0.90568 1.25514 0.96542 1.02093 1.02257 1.69797 1.08121 1.34601 1.49295 0.85190 0.76463 0.80367 0.78041 1.21526 1.22234 1.19494 1.23750 1.01931 0.95809 0.97319 0.90896 0.91343 0.90132 0.86591 0.82723 0.80217 0.80336 0.86014 0.88508 0.87583 0.84529 0.87307 0.90213 0.91733 0.90384 0.79283 0.93991 0.91160 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.73 8.74 127.77 1.12 2.85 16 2 N -0.59 -15.31 3.08 -819.64 -2.53 -17.84 16 3 C 0.55 14.69 5.81 87.66 0.51 15.20 16 4 O -0.58 -19.62 16.21 -3.03 -0.05 -19.67 16 5 C -0.13 -2.53 1.37 -53.68 -0.07 -2.61 16 6 C -0.09 -1.69 3.63 -19.78 -0.07 -1.76 16 7 C -0.08 -1.69 9.44 22.47 0.21 -1.48 16 8 C -0.16 -2.78 10.11 22.36 0.23 -2.56 16 9 C 0.09 1.47 11.18 84.68 0.95 2.42 16 10 N -0.50 -9.51 10.36 -195.85 -2.03 -11.54 16 11 C 0.10 1.66 10.49 84.67 0.89 2.55 16 12 C -0.13 -2.03 9.74 30.60 0.30 -1.73 16 13 C -0.13 -1.70 9.37 30.60 0.29 -1.41 16 14 C 0.13 3.88 4.22 45.52 0.19 4.07 16 15 C -0.16 -5.29 7.31 31.18 0.23 -5.06 16 16 C 0.15 5.88 4.48 45.58 0.20 6.08 16 17 N -0.72 -35.37 5.41 -320.15 -1.73 -37.10 16 18 C -0.25 -13.38 9.97 84.03 0.84 -12.54 16 19 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 20 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 21 N -0.97 -58.03 13.06 21.65 0.28 -57.75 16 22 Si 0.97 45.47 29.55 68.60 2.03 47.49 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 26 C -0.15 -4.78 7.34 31.12 0.23 -4.55 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.73 6.13 -2.38 -0.01 1.72 16 29 H 0.08 1.59 5.45 -2.39 -0.01 1.57 16 30 H 0.12 2.72 7.42 -2.91 -0.02 2.70 16 31 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.18 1.95 5.97 -2.91 -0.02 1.93 16 34 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.10 1.77 8.03 -2.39 -0.02 1.75 16 36 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.14 0.97 6.13 -2.39 -0.01 0.96 16 38 H 0.11 3.43 7.20 -2.38 -0.02 3.42 16 39 H 0.08 2.71 6.69 -2.39 -0.02 2.70 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 41 H 0.08 3.00 8.10 -2.39 -0.02 2.98 16 42 H 0.37 19.60 7.93 -92.71 -0.73 18.86 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.08 2.61 6.87 -2.39 -0.02 2.59 16 Total: -1.00 -69.12 366.60 2.75 -66.37 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.28 Total: 34.12 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 6.50 Total: -4.09 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -6.01 Total: -124.22 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.05 Total: -19.67 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -69.12 2.75 -66.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999291785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.271 kcal (2) G-P(sol) polarization free energy of solvation -69.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds