Wall clock time and date at job start Tue Mar 31 2020 11:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 120.00110 * 2 1 4 4 O 1.21285 * 119.99698 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.00033 * 0.02562 * 3 2 1 6 6 H 1.08994 * 115.55103 * 34.32967 * 5 3 2 7 7 C 1.53006 * 117.49740 * 248.62275 * 5 3 2 8 8 C 1.52994 * 60.00054 * 252.51148 * 7 5 3 9 9 H 1.08997 * 117.52155 * 107.48516 * 8 7 5 10 10 C 1.50699 * 117.49771 * 252.51251 * 8 7 5 11 11 C 1.38675 * 120.41772 * 188.61984 * 10 8 7 12 12 C 1.38630 * 118.41860 * 179.74920 * 11 10 8 13 13 C 1.38224 * 119.16347 * 0.25530 * 12 11 10 14 14 N 1.31856 * 120.76155 * 359.97390 * 13 12 11 15 15 C 1.31888 * 121.72786 * 0.02789 * 14 13 12 16 16 C 1.46504 * 119.99979 * 180.02562 * 2 1 3 17 17 C 1.53786 * 113.61277 * 37.49241 * 16 2 1 18 18 C 1.53781 * 87.08027 * 220.01747 * 17 16 2 19 19 N 1.46492 * 113.61764 * 270.88535 * 18 17 16 20 20 C 1.36939 * 120.00002 * 252.49872 * 19 18 17 21 21 H 1.08004 * 120.00050 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00009 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00097 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00070 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46961 * 90.00061 * 24 22 20 26 26 H 1.48493 * 109.46928 * 209.99956 * 24 22 20 27 27 H 1.48496 * 109.46968 * 330.00305 * 24 22 20 28 28 C 1.53778 * 87.08126 * 25.43669 * 18 17 16 29 29 H 1.08996 * 109.47535 * 89.99899 * 1 2 3 30 30 H 1.09004 * 109.46792 * 210.00667 * 1 2 3 31 31 H 1.08999 * 109.46880 * 329.99464 * 1 2 3 32 32 H 1.09000 * 117.49640 * 145.01786 * 7 5 3 33 33 H 1.09002 * 117.50109 * 0.02562 * 7 5 3 34 34 H 1.08002 * 120.79244 * 0.03059 * 11 10 8 35 35 H 1.07998 * 120.41760 * 180.27499 * 12 11 10 36 36 H 1.07997 * 119.61788 * 180.02562 * 13 12 11 37 37 H 1.07999 * 119.61439 * 180.02562 * 15 14 13 38 38 H 1.08996 * 112.85055 * 168.79705 * 16 2 1 39 39 H 1.08994 * 113.61713 * 334.57229 * 17 16 2 40 40 H 1.09004 * 113.61361 * 105.47351 * 17 16 2 41 41 H 1.09008 * 113.61113 * 139.98194 * 18 17 16 42 42 H 0.97000 * 120.00199 * 72.49660 * 19 18 17 43 43 H 0.96996 * 119.99668 * 179.97438 * 23 22 20 44 44 H 1.09002 * 113.61787 * 220.02047 * 28 18 17 45 45 H 1.08997 * 113.69793 * 89.12428 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.4473 2.4733 0.5555 7 6 1.4602 3.3317 -1.2631 8 6 2.2076 3.7626 0.0004 9 1 3.2934 3.6676 0.0004 10 6 1.6580 4.9378 0.7672 11 6 2.3788 5.4919 1.8144 12 6 1.8365 6.5754 2.4880 13 6 0.6018 7.0606 2.0998 14 7 -0.0576 6.5055 1.1019 15 6 0.4275 5.4738 0.4388 16 6 2.1975 -1.2688 -0.0006 17 6 1.5373 -2.3609 -0.8587 18 6 1.9129 -3.3527 0.2549 19 7 3.2396 -3.9504 0.0854 20 6 3.3568 -5.2615 -0.2918 21 1 2.4711 -5.8551 -0.4641 22 6 4.6139 -5.8277 -0.4529 23 7 4.7266 -7.0879 -0.8160 24 14 6.1458 -4.8009 -0.1557 25 1 6.5499 -4.9156 1.2687 26 1 7.2465 -5.2913 -1.0235 27 1 5.8588 -3.3796 -0.4758 28 6 1.8954 -2.1551 1.2193 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5140 31 1 -0.3633 0.8899 0.5139 32 1 0.5710 3.8981 -1.5398 33 1 2.0540 2.9529 -2.0950 34 1 3.3418 5.0918 2.0955 35 1 2.3721 7.0348 3.3056 36 1 0.1726 7.9046 2.6192 37 1 -0.1416 5.0460 -0.3733 38 1 3.2624 -1.1426 -0.1957 39 1 0.4623 -2.2291 -0.9818 40 1 2.0526 -2.5468 -1.8011 41 1 1.1381 -4.0911 0.4615 42 1 4.0351 -3.4174 0.2405 43 1 5.6050 -7.4834 -0.9289 44 1 2.6998 -2.1747 1.9546 45 1 0.9189 -1.9660 1.6653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999446051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:58 Heat of formation + Delta-G solvation = 72.757984 kcal Electronic energy + Delta-G solvation = -25330.899941 eV Core-core repulsion = 21736.739473 eV Total energy + Delta-G solvation = -3594.160467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.96291 -40.18188 -38.59837 -36.72228 -34.96563 -33.01916 -32.78236 -31.24799 -30.41425 -27.18547 -25.93851 -25.23655 -24.76019 -23.96340 -23.45037 -22.13452 -21.19619 -19.37771 -18.41190 -18.07652 -17.67242 -17.23484 -16.68985 -16.23347 -15.71184 -15.32203 -14.83927 -14.67918 -14.57381 -14.26142 -14.08159 -13.43411 -13.30628 -13.03279 -13.00718 -12.74106 -12.47678 -12.28531 -12.18746 -12.16175 -12.09661 -11.93440 -11.42259 -10.96350 -10.86508 -10.77884 -10.37360 -10.31692 -10.10926 -9.91280 -9.83264 -9.71480 -9.60293 -9.19292 -8.95429 -8.53555 -7.34026 -5.81561 -3.18406 0.63984 0.87197 2.38221 2.90038 3.28859 3.37673 3.42371 3.45427 3.66914 3.91970 4.18847 4.29593 4.41139 4.46300 4.55680 4.56299 4.61725 4.70160 4.84734 4.92872 5.00024 5.03807 5.09848 5.17690 5.24332 5.33571 5.39362 5.42035 5.50972 5.60634 5.62521 5.68527 5.73313 5.76930 5.93294 5.96710 6.07044 6.25602 6.27280 6.41606 6.54298 6.62863 6.84869 7.40847 7.55933 7.94747 8.14594 8.37709 9.14944 9.87539 10.05940 11.36151 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.002440 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.460551 B =11470.825781 C =11992.692176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.597 5.597 3 C 0.539 3.461 4 O -0.540 6.540 5 C -0.175 4.175 6 H 0.126 0.874 7 C -0.141 4.141 8 C -0.085 4.085 9 H 0.130 0.870 10 C -0.101 4.101 11 C -0.066 4.066 12 C -0.169 4.169 13 C 0.091 3.909 14 N -0.482 5.482 15 C 0.097 3.903 16 C 0.121 3.879 17 C -0.179 4.179 18 C 0.178 3.822 19 N -0.730 5.730 20 C -0.249 4.249 21 H 0.093 0.907 22 C 0.008 3.992 23 N -0.931 5.931 24 Si 0.881 3.119 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.275 1.275 28 C -0.170 4.170 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.363 0.637 43 H 0.260 0.740 44 H 0.069 0.931 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.538 27.696 4.144 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.328 5.328 3 C 0.327 3.673 4 O -0.418 6.418 5 C -0.196 4.196 6 H 0.144 0.856 7 C -0.178 4.178 8 C -0.104 4.104 9 H 0.148 0.852 10 C -0.103 4.103 11 C -0.092 4.092 12 C -0.188 4.188 13 C -0.066 4.066 14 N -0.190 5.190 15 C -0.060 4.060 16 C 0.018 3.982 17 C -0.221 4.221 18 C 0.065 3.935 19 N -0.370 5.370 20 C -0.379 4.379 21 H 0.111 0.889 22 C -0.189 4.189 23 N -0.578 5.578 24 Si 0.711 3.289 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.201 1.201 28 C -0.210 4.210 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.132 0.868 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.197 0.803 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.733 27.738 3.841 30.361 hybrid contribution 1.909 0.296 0.483 1.991 sum -9.825 28.034 4.324 30.019 Atomic orbital electron populations 1.21786 0.79798 1.03046 1.02021 1.47853 1.06870 1.05874 1.72217 1.19573 0.87341 0.84330 0.76054 1.90707 1.13801 1.87191 1.50079 1.22441 1.01943 0.90155 1.05024 0.85593 1.23133 1.02870 1.00667 0.91148 1.20982 0.99627 0.90680 0.99127 0.85232 1.20151 0.96011 0.97149 0.96993 1.21513 0.99914 0.94425 0.93338 1.22177 0.97502 0.97711 1.01453 1.22799 0.91861 0.98565 0.93385 1.67720 1.35084 1.09311 1.06926 1.22698 0.92903 0.92320 0.98057 1.22802 0.97626 0.79824 0.97911 1.24268 0.99857 0.97127 1.00881 1.20846 0.89171 0.91475 0.91958 1.42559 1.01176 1.10846 1.82383 1.19085 0.94416 0.85410 1.38953 0.88948 1.24676 0.97130 0.95854 1.01190 1.69699 1.23133 1.11681 1.53241 0.86597 0.84191 0.80075 0.78020 1.20930 1.21577 1.20129 1.23983 1.01807 0.97624 0.97568 0.92329 0.90469 0.91299 0.87304 0.87343 0.84507 0.84575 0.82718 0.82724 0.86778 0.90487 0.90752 0.90473 0.80340 0.92947 0.91202 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 8.87 59.85 0.53 1.20 16 2 N -0.60 -7.66 3.08 -173.00 -0.53 -8.19 16 3 C 0.54 7.35 7.46 -10.99 -0.08 7.27 16 4 O -0.54 -9.60 15.74 5.55 0.09 -9.51 16 5 C -0.17 -1.64 4.93 -91.77 -0.45 -2.09 16 6 H 0.13 0.95 6.44 -51.93 -0.33 0.62 16 7 C -0.14 -1.08 9.57 -26.73 -0.26 -1.34 16 8 C -0.08 -0.77 5.58 -91.77 -0.51 -1.28 16 9 H 0.13 1.36 7.67 -51.93 -0.40 0.96 16 10 C -0.10 -0.86 5.62 -104.48 -0.59 -1.44 16 11 C -0.07 -0.52 9.89 -39.27 -0.39 -0.91 16 12 C -0.17 -1.14 10.11 -39.44 -0.40 -1.54 16 13 C 0.09 0.68 11.18 -17.55 -0.20 0.48 16 14 N -0.48 -4.54 10.36 -13.25 -0.14 -4.67 16 15 C 0.10 0.81 10.47 -17.55 -0.18 0.63 16 16 C 0.12 1.90 4.08 -67.11 -0.27 1.63 16 17 C -0.18 -2.86 7.31 -25.92 -0.19 -3.05 16 18 C 0.18 3.29 4.56 -67.12 -0.31 2.98 16 19 N -0.73 -17.12 5.11 -52.64 -0.27 -17.39 16 20 C -0.25 -6.94 10.45 -15.06 -0.16 -7.10 16 21 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 22 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 23 N -0.93 -29.07 13.97 55.49 0.78 -28.30 16 24 Si 0.88 22.36 27.74 -169.99 -4.71 17.65 16 25 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 27 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 28 C -0.17 -2.62 7.36 -25.92 -0.19 -2.81 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.64 6.34 -51.93 -0.33 0.31 16 31 H 0.07 0.45 5.99 -51.93 -0.31 0.14 16 32 H 0.11 0.57 6.21 -51.93 -0.32 0.25 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 36 H 0.16 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.16 0.98 6.05 -52.49 -0.32 0.66 16 38 H 0.11 2.16 7.23 -51.93 -0.38 1.78 16 39 H 0.08 1.01 6.72 -51.93 -0.35 0.66 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.42 8.10 -51.92 -0.42 1.00 16 42 H 0.36 8.58 5.76 -40.82 -0.24 8.35 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.08 1.05 6.92 -51.93 -0.36 0.69 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -34.58 366.22 -9.32 -43.90 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.30 Total: 8.23 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -3.74 Total: -7.23 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.16 Total: -58.56 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.58 -9.32 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999446051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.653 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds