Wall clock time and date at job start Tue Mar 31 2020 11:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99745 * 2 1 4 4 O 1.21272 * 120.00118 * 175.28770 * 3 2 1 5 5 C 1.50706 * 119.99856 * 355.28385 * 3 2 1 6 6 C 1.50703 * 115.54927 * 279.46575 * 5 3 2 7 7 C 1.38224 * 119.61994 * 305.19043 * 6 5 3 8 8 C 1.38635 * 119.15937 * 179.75413 * 7 6 5 9 9 C 1.38669 * 118.41765 * 0.50922 * 8 7 6 10 10 C 1.38177 * 119.16677 * 359.73335 * 9 8 7 11 11 N 1.31856 * 119.61349 * 125.46249 * 6 5 3 12 12 C 1.52999 * 117.49656 * 133.76308 * 5 3 2 13 13 C 1.52999 * 117.49774 * 65.13971 * 5 3 2 14 14 C 1.46496 * 120.00028 * 180.26853 * 2 1 3 15 15 H 1.09002 * 110.88511 * 179.02357 * 14 2 1 16 16 C 1.55154 * 111.00498 * 302.90517 * 14 2 1 17 17 C 1.54337 * 102.93856 * 153.57527 * 16 14 2 18 18 N 1.47015 * 107.26907 * 337.80900 * 17 16 14 19 19 C 1.36946 * 125.64569 * 178.97805 * 18 17 16 20 20 H 1.07996 * 119.99939 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99675 * 359.96860 * 19 18 17 22 22 N 1.31612 * 120.00031 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99627 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47429 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46872 * 120.00235 * 23 21 19 26 26 H 1.48505 * 109.46870 * 240.00022 * 23 21 19 27 27 C 1.47464 * 108.72852 * 358.97327 * 18 17 16 28 28 H 1.08998 * 109.47471 * 275.01130 * 1 2 3 29 29 H 1.08997 * 109.47485 * 35.01258 * 1 2 3 30 30 H 1.09004 * 109.46763 * 155.01656 * 1 2 3 31 31 H 1.07999 * 120.42098 * 359.97438 * 7 6 5 32 32 H 1.08002 * 120.78367 * 180.26255 * 8 7 6 33 33 H 1.08004 * 120.40915 * 179.75085 * 9 8 7 34 34 H 1.07998 * 119.61760 * 180.02562 * 10 9 8 35 35 H 1.08999 * 117.49785 * 359.97438 * 12 5 3 36 36 H 1.09001 * 117.49774 * 145.02115 * 12 5 3 37 37 H 1.09003 * 117.49406 * 214.97478 * 13 5 3 38 38 H 1.08995 * 117.49767 * 359.97114 * 13 5 3 39 39 H 1.08994 * 110.72556 * 271.93730 * 16 14 2 40 40 H 1.09000 * 110.72408 * 35.04221 * 16 14 2 41 41 H 1.09001 * 109.87750 * 97.22530 * 17 16 14 42 42 H 1.08997 * 109.88078 * 218.23540 * 17 16 14 43 43 H 0.97002 * 120.00161 * 180.02562 * 22 21 19 44 44 H 1.09005 * 110.34845 * 265.25354 * 27 18 17 45 45 H 1.08996 * 110.40660 * 142.91801 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3485 1.1691 0.0863 5 6 1.3891 2.4701 -0.1073 6 6 0.9679 2.8649 -1.4994 7 6 1.9152 2.9456 -2.5027 8 6 1.5164 3.3046 -3.7810 9 6 0.1754 3.5807 -4.0008 10 6 -0.7135 3.4840 -2.9473 11 7 -0.2992 3.1346 -1.7449 12 6 1.7794 3.5913 0.8578 13 6 0.4567 2.8457 1.0461 14 6 2.1975 -1.2687 -0.0059 15 1 3.2737 -1.0960 -0.0225 16 6 1.7942 -2.1494 1.2060 17 6 2.0735 -3.5809 0.7011 18 7 2.0582 -3.5362 -0.7683 19 6 2.2838 -4.5993 -1.6015 20 1 2.2498 -4.4629 -2.6723 21 6 2.5564 -5.8522 -1.0697 22 7 2.5974 -6.0185 0.2353 23 14 2.8649 -7.3022 -2.2062 24 1 2.7634 -6.8546 -3.6185 25 1 4.2238 -7.8465 -1.9564 26 1 1.8534 -8.3582 -1.9471 27 6 1.7594 -2.1572 -1.1969 28 1 -0.3634 0.0898 1.0237 29 1 -0.3634 0.8416 -0.5896 30 1 -0.3633 -0.9316 -0.4341 31 1 2.9524 2.7282 -2.2943 32 1 2.2339 3.3716 -4.5855 33 1 -0.1699 3.8674 -4.9831 34 1 -1.7596 3.6970 -3.1104 35 1 2.5782 3.3864 1.5706 36 1 1.7316 4.6148 0.4859 37 1 -0.4612 3.3787 0.7981 38 1 0.3852 2.1502 1.8823 39 1 2.4128 -1.9189 2.0733 40 1 0.7379 -2.0203 1.4421 41 1 3.0506 -3.9134 1.0517 42 1 1.3000 -4.2587 1.0618 43 1 2.7882 -6.8939 0.6069 44 1 0.6918 -2.0413 -1.3841 45 1 2.3315 -1.9043 -2.0895 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033079071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:37 Heat of formation + Delta-G solvation = 68.804021 kcal Electronic energy + Delta-G solvation = -26706.398410 eV Core-core repulsion = 23112.066486 eV Total energy + Delta-G solvation = -3594.331924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.98413 -39.64384 -37.63138 -36.38550 -34.72875 -32.62111 -32.06512 -31.26104 -29.24571 -27.63584 -26.74288 -25.33288 -24.28902 -23.79408 -22.65384 -22.32372 -20.12248 -19.99976 -18.77895 -17.62623 -16.96648 -16.59063 -16.32025 -16.14605 -15.58508 -15.02036 -14.75775 -14.46710 -14.10400 -14.04441 -13.85866 -13.47358 -13.12889 -12.88668 -12.71221 -12.45514 -12.14499 -12.04038 -11.94097 -11.72324 -11.66099 -10.98662 -10.94486 -10.85875 -10.82586 -10.73835 -10.26916 -10.07920 -10.06458 -9.82198 -9.73414 -9.69023 -9.60236 -9.07856 -8.62946 -8.33632 -6.84465 -5.71859 -3.06094 0.83689 1.05651 2.59935 3.02011 3.37025 3.40147 3.45584 3.48066 3.74116 3.94737 4.38883 4.47295 4.51074 4.63636 4.74169 4.83266 4.88326 5.03836 5.19848 5.31686 5.37282 5.41883 5.45905 5.49175 5.59820 5.62353 5.66046 5.70940 5.77802 5.79368 5.89924 5.94994 5.97771 5.99162 6.25486 6.29160 6.45284 6.49110 6.56820 6.69429 6.96995 7.53955 7.58691 7.61379 7.73785 7.82030 8.23081 8.29685 9.20695 9.80485 10.45596 11.39715 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.003452 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.425015 B = 8108.758615 C = 8935.880339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.591 5.591 3 C 0.555 3.445 4 O -0.535 6.535 5 C -0.115 4.115 6 C 0.172 3.828 7 C -0.154 4.154 8 C -0.072 4.072 9 C -0.175 4.175 10 C 0.100 3.900 11 N -0.475 5.475 12 C -0.133 4.133 13 C -0.141 4.141 14 C 0.122 3.878 15 H 0.106 0.894 16 C -0.151 4.151 17 C 0.180 3.820 18 N -0.602 5.602 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.913 3.087 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.131 3.869 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.158 0.842 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.045 0.955 43 H 0.252 0.748 44 H 0.023 0.977 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.074 21.969 -2.510 23.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.322 5.322 3 C 0.340 3.660 4 O -0.412 6.412 5 C -0.119 4.119 6 C 0.035 3.965 7 C -0.174 4.174 8 C -0.098 4.098 9 C -0.195 4.195 10 C -0.057 4.057 11 N -0.184 5.184 12 C -0.171 4.171 13 C -0.178 4.178 14 C 0.019 3.981 15 H 0.124 0.876 16 C -0.190 4.190 17 C 0.055 3.945 18 N -0.329 5.329 19 C -0.357 4.357 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.743 3.257 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.004 3.996 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.175 0.825 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.993 21.648 -1.776 22.819 hybrid contribution 0.666 -0.845 -1.405 1.770 sum -6.327 20.803 -3.181 21.975 Atomic orbital electron populations 1.21886 0.79488 1.03788 1.01823 1.47743 1.07179 1.05597 1.71638 1.19179 0.86897 0.83574 0.76323 1.90689 1.13738 1.86906 1.49883 1.19847 1.06382 0.96104 0.89570 1.19710 0.88866 0.95173 0.92776 1.21999 1.01623 1.00360 0.93417 1.21613 0.96284 0.95100 0.96775 1.22163 0.94320 1.02093 1.00912 1.22719 1.00166 0.95099 0.87696 1.67329 1.16644 1.11186 1.23254 1.23061 0.99246 0.95390 0.99448 1.23093 0.95047 1.02597 0.97039 1.22485 0.97333 0.80984 0.97337 0.87609 1.23219 1.00471 0.98425 0.96905 1.21140 1.00991 0.89178 0.83208 1.44397 1.83368 1.03030 1.02129 1.19102 1.41267 0.86334 0.88993 0.90366 1.24806 1.01880 0.97585 0.96049 1.69967 1.55350 1.22303 1.09218 0.86032 0.77520 0.82562 0.79569 1.20510 1.21696 1.21721 1.21767 0.97271 0.86021 0.94563 0.92611 0.90704 0.90216 0.84425 0.84613 0.84720 0.82525 0.87436 0.88033 0.86746 0.87985 0.91913 0.92087 0.93308 0.93635 0.93751 0.95994 0.94205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 8.22 59.85 0.49 1.47 16 2 N -0.59 -9.50 2.91 -171.48 -0.50 -10.00 16 3 C 0.55 8.90 6.56 -10.98 -0.07 8.83 16 4 O -0.54 -10.33 16.39 5.56 0.09 -10.23 16 5 C -0.11 -1.44 1.09 -156.81 -0.17 -1.61 16 6 C 0.17 2.11 5.42 -82.59 -0.45 1.67 16 7 C -0.15 -1.82 9.50 -39.44 -0.37 -2.20 16 8 C -0.07 -0.68 10.18 -39.28 -0.40 -1.08 16 9 C -0.18 -1.44 10.11 -39.44 -0.40 -1.84 16 10 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 11 N -0.48 -5.36 9.01 -9.47 -0.09 -5.45 16 12 C -0.13 -1.40 9.86 -26.73 -0.26 -1.66 16 13 C -0.14 -1.42 8.50 -26.73 -0.23 -1.65 16 14 C 0.12 2.35 3.45 -65.78 -0.23 2.12 16 15 H 0.11 2.26 7.02 -51.93 -0.36 1.89 16 16 C -0.15 -2.93 6.53 -24.89 -0.16 -3.09 16 17 C 0.18 4.43 5.37 -3.06 -0.02 4.41 16 18 N -0.60 -15.67 3.40 -170.03 -0.58 -16.24 16 19 C -0.23 -6.46 10.28 -15.05 -0.15 -6.62 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -27.19 10.31 55.49 0.57 -26.62 16 23 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 C 0.13 2.82 6.78 -2.51 -0.02 2.81 16 28 H 0.06 0.65 7.96 -51.93 -0.41 0.24 16 29 H 0.07 0.95 5.74 -51.93 -0.30 0.65 16 30 H 0.08 1.14 6.14 -51.93 -0.32 0.82 16 31 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.11 1.07 7.71 -51.93 -0.40 0.67 16 38 H 0.10 1.00 7.97 -51.93 -0.41 0.58 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.08 7.22 -51.93 -0.38 0.71 16 41 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 42 H 0.05 1.22 7.50 -51.93 -0.39 0.83 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.02 0.46 6.12 -51.93 -0.32 0.15 16 45 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -32.93 363.12 -9.38 -42.31 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.60 Total: 1.54 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -2.73 Total: 1.97 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.59 Total: -58.31 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.93 -9.38 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033079071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.119 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds