Wall clock time and date at job start Tue Mar 31 2020 11:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47893 * 111.00041 * 2 1 4 4 C 1.54590 * 102.64450 * 265.49520 * 3 2 1 5 5 C 1.51632 * 102.84656 * 334.38073 * 4 3 2 6 6 C 1.38091 * 131.38010 * 196.28488 * 5 4 3 7 7 C 1.38005 * 120.27786 * 179.63312 * 6 5 4 8 8 C 1.39607 * 119.74541 * 359.89190 * 7 6 5 9 9 C 1.47864 * 120.02814 * 180.10487 * 8 7 6 10 10 O 1.21548 * 119.99752 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99533 * 0.02562 * 9 8 7 12 12 C 1.46505 * 119.99622 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.09004 * 112.73833 * 56.23561 * 13 12 11 15 15 C 1.53495 * 113.46977 * 187.05871 * 13 12 11 16 16 C 1.53498 * 83.34335 * 140.84879 * 15 13 12 17 17 N 1.47067 * 87.98706 * 333.92976 * 16 15 13 18 18 C 1.36935 * 136.05764 * 207.15118 * 17 16 15 19 19 H 1.07997 * 119.99349 * 179.97438 * 18 17 16 20 20 C 1.38802 * 120.00145 * 359.95659 * 18 17 16 21 21 N 1.31623 * 120.00096 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00169 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46794 * 60.00053 * 22 20 18 24 24 H 1.48502 * 109.47136 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47074 * 300.00202 * 22 20 18 26 26 C 1.39272 * 119.94409 * 0.38625 * 8 7 6 27 27 C 1.39078 * 107.90385 * 16.05127 * 5 4 3 28 28 H 1.09003 * 109.46915 * 60.12905 * 1 2 3 29 29 H 1.09002 * 109.46589 * 180.12678 * 1 2 3 30 30 H 1.09000 * 109.46869 * 300.12765 * 1 2 3 31 31 H 1.08998 * 110.77913 * 147.21248 * 3 2 1 32 32 H 1.08995 * 110.94051 * 23.85682 * 3 2 1 33 33 H 1.09002 * 110.74027 * 216.03781 * 4 3 2 34 34 H 1.08997 * 110.89177 * 92.78679 * 4 3 2 35 35 H 1.08000 * 119.85847 * 359.59582 * 6 5 4 36 36 H 1.07993 * 120.12473 * 179.88324 * 7 6 5 37 37 H 0.96996 * 120.00772 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 39 39 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 40 40 H 1.09002 * 114.20591 * 254.43458 * 15 13 12 41 41 H 1.08995 * 114.20475 * 27.25921 * 15 13 12 42 42 H 1.09008 * 113.46750 * 219.15106 * 16 15 13 43 43 H 1.09000 * 113.46776 * 88.71402 * 16 15 13 44 44 H 0.97005 * 119.99903 * 179.97438 * 21 20 18 45 45 H 1.08000 * 119.95995 * 179.75410 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 2.2309 1.6542 -1.5037 5 6 2.4317 0.2629 -2.0724 6 6 2.9612 -0.1645 -3.2740 7 6 3.0427 -1.5124 -3.5583 8 6 2.5891 -2.4459 -2.6245 9 6 2.6754 -3.8918 -2.9217 10 8 2.2799 -4.7040 -2.1085 11 7 3.1927 -4.3089 -4.0942 12 6 3.2788 -5.7415 -4.3885 13 6 3.8986 -5.9415 -5.7729 14 1 4.8755 -5.4678 -5.8696 15 6 3.8756 -7.4009 -6.2480 16 6 3.5476 -6.7663 -7.6066 17 7 2.9810 -5.6220 -6.8770 18 6 2.0210 -4.6759 -7.1189 19 1 1.8033 -3.9250 -6.3740 20 6 1.3281 -4.6820 -8.3216 21 7 1.5941 -5.5968 -9.2298 22 14 0.0181 -3.3917 -8.6514 23 1 0.6300 -2.0398 -8.5966 24 1 -0.5688 -3.6148 -9.9972 25 1 -1.0480 -3.4946 -7.6226 26 6 2.0497 -2.0140 -1.4153 27 6 1.9711 -0.6535 -1.1330 28 1 -0.3633 0.5118 -0.8912 29 1 -0.3632 -1.0277 0.0023 30 1 -0.3633 0.5158 0.8888 31 1 2.9374 1.4347 0.5519 32 1 1.2695 2.0780 0.4117 33 1 3.1220 2.2642 -1.6522 34 1 1.3591 2.1317 -1.9509 35 1 3.3126 0.5593 -3.9945 36 1 3.4555 -1.8439 -4.4995 37 1 3.5080 -3.6608 -4.7433 38 1 3.9003 -6.2299 -3.6379 39 1 2.2796 -6.1766 -4.3718 40 1 4.8445 -7.8987 -6.2095 41 1 3.0659 -7.9957 -5.8254 42 1 2.8076 -7.3254 -8.1795 43 1 4.4314 -6.5133 -8.1922 44 1 1.1096 -5.6012 -10.0702 45 1 1.6951 -2.7358 -0.6945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038972785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:32 Heat of formation + Delta-G solvation = 68.104051 kcal Electronic energy + Delta-G solvation = -25985.153700 eV Core-core repulsion = 22390.791423 eV Total energy + Delta-G solvation = -3594.362277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.01688 -39.44453 -38.12968 -36.54702 -34.12313 -32.57757 -32.23729 -30.14824 -29.65426 -28.03919 -27.39787 -26.11853 -23.74056 -23.48643 -22.42372 -21.71189 -21.19842 -19.97054 -19.21258 -17.74037 -16.61453 -16.41544 -16.03765 -15.89664 -15.33842 -15.26436 -14.70309 -14.56129 -14.15727 -13.94491 -13.79997 -13.62573 -13.34561 -13.25688 -12.93867 -12.71493 -12.49624 -12.19663 -11.96510 -11.79467 -11.54129 -11.42215 -11.13999 -11.11506 -10.98831 -10.78496 -10.60440 -10.04006 -9.86008 -9.71641 -9.65615 -9.23460 -8.95493 -8.83277 -8.55559 -8.13247 -6.92394 -5.79210 -3.11928 0.79639 1.24098 2.94826 3.26300 3.35946 3.41368 3.41896 3.64963 3.86331 4.26459 4.41038 4.48398 4.66212 4.77733 4.91786 5.00010 5.13533 5.15213 5.19478 5.23160 5.29077 5.38398 5.40604 5.52860 5.55435 5.60818 5.63514 5.73056 5.83251 5.90466 6.08632 6.15125 6.24361 6.27515 6.31084 6.39389 6.44984 6.58529 6.64632 6.70594 6.87459 7.02387 7.20566 7.37687 7.55625 7.87935 7.95187 8.52673 9.00397 9.67837 10.60622 11.37886 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.003563 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.106551 B = 7856.158434 C = 8993.598550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.495 5.495 3 C 0.049 3.951 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.095 4.095 7 C -0.092 4.092 8 C -0.111 4.111 9 C 0.554 3.446 10 O -0.547 6.547 11 N -0.706 5.706 12 C 0.121 3.879 13 C 0.127 3.873 14 H 0.049 0.951 15 C -0.161 4.161 16 C 0.151 3.849 17 N -0.601 5.601 18 C -0.215 4.215 19 H 0.079 0.921 20 C -0.005 4.005 21 N -0.918 5.918 22 Si 0.907 3.093 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.284 1.284 26 C -0.052 4.052 27 C 0.074 3.926 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.403 0.597 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.025 0.975 44 H 0.254 0.746 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.547 12.297 14.838 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.212 5.212 3 C -0.077 4.077 4 C -0.150 4.150 5 C -0.123 4.123 6 C -0.114 4.114 7 C -0.111 4.111 8 C -0.115 4.115 9 C 0.341 3.659 10 O -0.426 6.426 11 N -0.356 5.356 12 C -0.003 4.003 13 C 0.019 3.981 14 H 0.066 0.934 15 C -0.200 4.200 16 C 0.026 3.974 17 N -0.327 5.327 18 C -0.343 4.343 19 H 0.097 0.903 20 C -0.202 4.202 21 N -0.565 5.565 22 Si 0.737 3.263 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.211 1.211 26 C -0.072 4.072 27 C -0.021 4.021 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.238 0.762 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.064 0.936 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.102 11.615 15.691 19.767 hybrid contribution -0.748 1.540 -1.414 2.221 sum 2.354 13.155 14.277 19.555 Atomic orbital electron populations 1.22516 0.85325 1.03200 1.01077 1.60193 1.08669 1.14628 1.37753 1.23171 1.01431 0.87887 0.95259 1.21731 1.03079 0.94162 0.96051 1.21166 1.01128 0.95590 0.94429 1.20333 0.99792 0.95542 0.95730 1.21323 0.98453 0.92564 0.98777 1.19777 1.02786 0.93438 0.95459 1.18148 0.77985 0.87664 0.82100 1.90736 1.48863 1.55305 1.47706 1.45888 1.62266 1.09572 1.17903 1.21851 1.01806 0.79810 0.96849 1.22430 0.93469 0.94229 0.88002 0.93414 1.23659 1.00319 0.95157 1.00833 1.22030 0.95856 0.87544 0.91979 1.45666 1.38463 1.33886 1.14720 1.18793 1.09578 1.05796 1.00097 0.90284 1.24756 0.99986 0.99017 0.96461 1.69817 1.43674 1.35294 1.07684 0.86284 0.81721 0.80987 0.77300 1.21200 1.21506 1.21096 1.20496 0.97498 0.93146 0.96078 1.19385 0.99826 0.93159 0.89777 0.94754 0.90669 0.90659 0.89179 0.89622 0.89328 0.89895 0.85420 0.84822 0.76165 0.92068 0.90915 0.92301 0.90161 0.90975 0.95727 0.93614 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.29 60.07 0.56 0.79 16 2 N -0.49 -5.39 5.33 -176.88 -0.94 -6.33 16 3 C 0.05 0.40 6.99 -2.44 -0.02 0.38 16 4 C -0.11 -0.93 6.97 -26.59 -0.19 -1.12 16 5 C -0.12 -1.40 6.23 -103.91 -0.65 -2.04 16 6 C -0.10 -1.12 10.01 -39.72 -0.40 -1.52 16 7 C -0.09 -1.23 9.54 -39.16 -0.37 -1.61 16 8 C -0.11 -1.71 5.86 -105.06 -0.62 -2.33 16 9 C 0.55 9.98 7.77 -12.32 -0.10 9.88 16 10 O -0.55 -11.39 16.33 5.32 0.09 -11.30 16 11 N -0.71 -12.33 5.28 -61.24 -0.32 -12.65 16 12 C 0.12 2.21 5.52 -4.04 -0.02 2.19 16 13 C 0.13 2.41 4.10 -72.40 -0.30 2.12 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C -0.16 -2.90 8.03 -26.22 -0.21 -3.11 16 16 C 0.15 3.44 7.39 -8.51 -0.06 3.37 16 17 N -0.60 -14.50 3.65 -177.00 -0.65 -15.15 16 18 C -0.22 -5.72 10.55 -15.06 -0.16 -5.88 16 19 H 0.08 2.01 7.51 -52.49 -0.39 1.62 16 20 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 21 N -0.92 -26.77 11.51 55.49 0.64 -26.13 16 22 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.05 -0.76 9.62 -38.85 -0.37 -1.13 16 27 C 0.07 0.95 5.58 -83.42 -0.47 0.49 16 28 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.50 7.77 -51.93 -0.40 0.10 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.13 1.66 6.40 -52.49 -0.34 1.33 16 37 H 0.40 6.61 6.40 -40.82 -0.26 6.35 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 42 H 0.07 1.83 7.13 -51.92 -0.37 1.46 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.14 2.08 7.63 -52.49 -0.40 1.68 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -32.49 368.79 -10.91 -43.40 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.79 Total: 5.51 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -3.46 Total: 0.23 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -1.27 Total: -60.27 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.49 -10.91 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038972785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.506 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds