Wall clock time and date at job start Tue Mar 31 2020 11:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99981 * 2 1 4 4 C 1.52998 * 109.47033 * 277.38066 * 3 2 1 5 5 H 1.09002 * 113.04252 * 54.03896 * 4 3 2 6 6 C 1.53950 * 113.76791 * 185.78800 * 4 3 2 7 7 C 1.53950 * 86.29008 * 137.91094 * 6 4 3 8 8 N 1.47582 * 86.23786 * 336.34098 * 7 6 4 9 9 C 1.36940 * 134.48705 * 204.70164 * 8 7 6 10 10 H 1.08005 * 119.99598 * 195.90886 * 9 8 7 11 11 C 1.38814 * 120.00236 * 15.90774 * 9 8 7 12 12 N 1.31618 * 120.00099 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99739 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47008 * 90.00317 * 13 11 9 15 15 H 1.48505 * 109.46925 * 209.99833 * 13 11 9 16 16 H 1.48501 * 109.47326 * 329.99954 * 13 11 9 17 17 C 1.34773 * 119.99631 * 180.02562 * 2 1 3 18 18 O 1.21562 * 119.99801 * 176.10754 * 17 2 1 19 19 C 1.47841 * 120.00483 * 356.10163 * 17 2 1 20 20 C 1.40021 * 120.55361 * 51.35907 * 19 17 2 21 21 C 1.38357 * 118.28625 * 179.97438 * 20 19 17 22 22 C 1.38360 * 119.30358 * 359.97438 * 21 20 19 23 23 N 1.31923 * 121.07484 * 0.03107 * 22 21 20 24 24 C 1.31689 * 121.88248 * 359.67185 * 23 22 21 25 25 C 1.50708 * 119.71883 * 180.29386 * 24 23 22 26 26 C 1.53006 * 117.49415 * 13.51425 * 25 24 23 27 27 C 1.52997 * 59.99860 * 252.50886 * 26 25 24 28 28 H 1.09002 * 109.47193 * 94.63595 * 1 2 3 29 29 H 1.08994 * 109.47260 * 214.64146 * 1 2 3 30 30 H 1.08999 * 109.47135 * 334.64633 * 1 2 3 31 31 H 1.09001 * 109.47184 * 157.38149 * 3 2 1 32 32 H 1.09000 * 109.47082 * 37.38187 * 3 2 1 33 33 H 1.08995 * 113.74193 * 23.56462 * 6 4 3 34 34 H 1.09002 * 113.73901 * 252.25399 * 6 4 3 35 35 H 1.09004 * 113.76958 * 90.69232 * 7 6 4 36 36 H 1.08998 * 113.77072 * 221.98000 * 7 6 4 37 37 H 0.96993 * 119.99773 * 180.02562 * 12 11 9 38 38 H 1.07999 * 120.85943 * 0.02562 * 20 19 17 39 39 H 1.08001 * 120.34911 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.46196 * 180.02562 * 22 21 20 41 41 H 1.08997 * 115.55058 * 159.22364 * 25 24 23 42 42 H 1.08992 * 117.50096 * 0.02562 * 26 25 24 43 43 H 1.09007 * 117.49202 * 145.02170 * 26 25 24 44 44 H 1.09000 * 117.50650 * 252.51109 * 27 26 25 45 45 H 1.09002 * 117.51692 * 107.48152 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2920 1.8030 -1.4305 5 1 1.3215 1.8862 -1.9199 6 6 3.1651 3.0637 -1.5656 7 6 3.7279 2.4155 -2.8435 8 7 3.3184 1.1263 -2.2532 9 6 3.7266 -0.1719 -2.4060 10 1 3.1030 -0.9793 -2.0515 11 6 4.9419 -0.4501 -3.0164 12 7 5.7016 0.5338 -3.4489 13 14 5.4983 -2.2210 -3.2253 14 1 5.0080 -2.7437 -4.5260 15 1 6.9818 -2.2805 -3.1955 16 1 4.9474 -3.0466 -2.1207 17 6 2.1388 -1.1672 -0.0005 18 8 3.3523 -1.1684 -0.0720 19 6 1.4022 -2.4461 0.0859 20 6 0.3408 -2.7166 -0.7863 21 6 -0.3156 -3.9284 -0.6643 22 6 0.0941 -4.8258 0.3058 23 7 1.0978 -4.5436 1.1141 24 6 1.7572 -3.4066 1.0335 25 6 2.9007 -3.1376 1.9777 26 6 3.4488 -4.3205 2.7784 27 6 2.6180 -3.2427 3.4776 28 1 -0.3634 -0.0831 -1.0243 29 1 -0.3633 -0.8454 0.5841 30 1 -0.3633 0.9287 0.4400 31 1 3.2007 1.1091 0.3952 32 1 1.6720 1.9916 0.6239 33 1 3.9011 3.1752 -0.7694 34 1 2.5953 3.9745 -1.7499 35 1 3.1792 2.6786 -3.7479 36 1 4.8067 2.5254 -2.9534 37 1 6.5506 0.3394 -3.8757 38 1 0.0426 -1.9981 -1.5355 39 1 -1.1392 -4.1713 -1.3195 40 1 -0.4162 -5.7726 0.4030 41 1 3.6109 -2.3779 1.6514 42 1 2.9827 -5.2933 2.6221 43 1 4.5201 -4.3392 2.9790 44 1 3.1426 -2.5523 4.1382 45 1 1.6049 -3.5059 3.7816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085698725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:23 Heat of formation + Delta-G solvation = 105.459802 kcal Electronic energy + Delta-G solvation = -27597.298243 eV Core-core repulsion = 24004.555833 eV Total energy + Delta-G solvation = -3592.742410 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.72998 -38.98749 -37.42797 -36.80716 -34.94865 -32.53290 -31.92005 -31.14784 -28.41322 -27.65661 -26.34071 -24.56573 -24.14829 -23.15763 -22.29512 -22.10491 -20.66987 -19.34435 -18.94082 -17.11104 -16.99923 -16.69596 -16.15111 -15.68748 -15.21241 -14.94349 -14.64316 -14.27099 -13.84622 -13.75316 -13.65201 -13.44583 -13.11474 -12.72612 -12.51440 -12.46758 -12.12073 -11.56898 -11.51391 -11.39440 -11.33340 -10.96369 -10.74943 -10.74869 -10.55574 -10.40311 -10.36689 -9.91055 -9.77650 -9.66442 -9.55664 -9.27856 -9.06720 -8.69682 -8.45141 -8.03540 -6.57766 -5.53029 -2.86433 0.89203 1.21172 3.19216 3.39050 3.52748 3.58857 3.64347 3.68398 4.11707 4.27534 4.55431 4.63767 4.77918 4.80612 5.06438 5.10882 5.18201 5.19898 5.29604 5.30807 5.44191 5.50782 5.64148 5.66489 5.72080 5.73929 5.75352 5.88083 5.96263 5.99993 6.03347 6.05395 6.13812 6.24936 6.38285 6.41052 6.47294 6.62863 6.75955 6.79817 7.02786 7.37596 7.61972 7.78860 7.85164 7.96274 8.25829 8.75835 9.27975 9.96184 10.82016 11.62207 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.005694 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.008826 B = 4916.152872 C = 5670.820050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.607 5.607 3 C 0.120 3.880 4 C 0.122 3.878 5 H 0.041 0.959 6 C -0.154 4.154 7 C 0.140 3.860 8 N -0.594 5.594 9 C -0.182 4.182 10 H 0.080 0.920 11 C -0.007 4.007 12 N -0.925 5.925 13 Si 0.898 3.102 14 H -0.297 1.297 15 H -0.292 1.292 16 H -0.275 1.275 17 C 0.545 3.455 18 O -0.466 6.466 19 C -0.157 4.157 20 C -0.045 4.045 21 C -0.186 4.186 22 C 0.111 3.889 23 N -0.488 5.488 24 C 0.204 3.796 25 C -0.128 4.128 26 C -0.155 4.155 27 C -0.160 4.160 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.017 0.983 36 H 0.085 0.915 37 H 0.248 0.752 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.156 0.844 41 H 0.141 0.859 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.336 -3.559 10.812 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.341 5.341 3 C -0.003 4.003 4 C 0.013 3.987 5 H 0.059 0.941 6 C -0.193 4.193 7 C 0.015 3.985 8 N -0.320 5.320 9 C -0.310 4.310 10 H 0.097 0.903 11 C -0.202 4.202 12 N -0.573 5.573 13 Si 0.729 3.271 14 H -0.225 1.225 15 H -0.219 1.219 16 H -0.200 1.200 17 C 0.331 3.669 18 O -0.338 6.338 19 C -0.162 4.162 20 C -0.071 4.071 21 C -0.206 4.206 22 C -0.046 4.046 23 N -0.196 5.196 24 C 0.067 3.933 25 C -0.147 4.147 26 C -0.192 4.192 27 C -0.197 4.197 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.174 0.826 41 H 0.159 0.841 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.181 -4.439 11.312 17.928 hybrid contribution -0.240 -0.395 -1.253 1.335 sum -13.422 -4.834 10.059 17.455 Atomic orbital electron populations 1.21779 0.80850 1.02376 1.01163 1.47521 1.05967 1.06138 1.74502 1.21900 0.97695 0.82790 0.97927 1.22766 0.93450 0.91372 0.91067 0.94128 1.23724 0.99155 0.95194 1.01241 1.22435 1.00985 0.83943 0.91182 1.45953 1.37992 1.03041 1.45003 1.19058 0.99684 0.81073 1.31192 0.90285 1.24742 0.96380 0.96745 1.02365 1.69789 1.12723 1.29283 1.45549 0.86286 0.77827 0.85522 0.77461 1.22465 1.21891 1.20019 1.17834 0.87465 0.82735 0.78882 1.90965 1.12494 1.86037 1.44287 1.20865 0.98369 0.97548 0.99407 1.21841 0.92084 0.96890 0.96259 1.22035 1.02457 0.95060 1.01022 1.22802 0.92371 0.98835 0.90605 1.67376 1.07506 1.19039 1.25710 1.20326 0.92972 0.87716 0.92328 1.21345 0.98291 1.04008 0.91055 1.22903 0.99537 0.94415 1.02384 1.22910 1.01502 1.02529 0.92805 0.93065 0.91975 0.91199 0.89002 0.91789 0.90699 0.93425 0.96562 0.89649 0.94216 0.84153 0.84444 0.82631 0.84142 0.87722 0.88603 0.88458 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 9.16 59.85 0.55 1.54 16 2 N -0.61 -10.19 2.88 -182.70 -0.53 -10.72 16 3 C 0.12 2.11 5.37 -4.04 -0.02 2.09 16 4 C 0.12 2.42 4.54 -66.67 -0.30 2.12 16 5 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.15 -2.93 7.86 -25.79 -0.20 -3.13 16 7 C 0.14 3.36 7.94 -2.97 -0.02 3.34 16 8 N -0.59 -15.31 3.56 -169.64 -0.60 -15.91 16 9 C -0.18 -5.25 8.34 -15.06 -0.13 -5.38 16 10 H 0.08 2.28 4.84 -52.48 -0.25 2.03 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -28.84 11.27 55.49 0.63 -28.22 16 13 Si 0.90 24.48 29.55 -169.99 -5.02 19.46 16 14 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 15 H -0.29 -7.99 7.11 56.52 0.40 -7.59 16 16 H -0.27 -7.59 7.11 56.52 0.40 -7.18 16 17 C 0.55 10.63 5.06 -12.33 -0.06 10.57 16 18 O -0.47 -11.22 11.23 5.31 0.06 -11.16 16 19 C -0.16 -2.66 4.79 -104.82 -0.50 -3.16 16 20 C -0.04 -0.63 8.01 -38.87 -0.31 -0.94 16 21 C -0.19 -2.13 10.10 -39.49 -0.40 -2.53 16 22 C 0.11 1.33 11.17 -17.47 -0.20 1.14 16 23 N -0.49 -7.26 9.36 -9.14 -0.09 -7.34 16 24 C 0.20 3.39 6.47 -82.17 -0.53 2.86 16 25 C -0.13 -2.07 5.55 -91.77 -0.51 -2.58 16 26 C -0.16 -2.11 10.02 -26.73 -0.27 -2.38 16 27 C -0.16 -2.03 10.22 -26.73 -0.27 -2.31 16 28 H 0.05 0.60 7.22 -51.93 -0.37 0.22 16 29 H 0.06 0.69 6.37 -51.93 -0.33 0.36 16 30 H 0.07 0.68 7.92 -51.93 -0.41 0.27 16 31 H 0.09 1.91 7.26 -51.93 -0.38 1.53 16 32 H 0.06 0.88 7.98 -51.93 -0.41 0.47 16 33 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 2.32 6.61 -51.93 -0.34 1.97 16 37 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.14 1.83 6.67 -52.49 -0.35 1.49 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.14 2.63 5.86 -51.93 -0.30 2.33 16 42 H 0.10 1.42 7.62 -51.93 -0.40 1.02 16 43 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -35.64 358.98 -9.91 -45.55 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.49 Total: 1.98 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -3.28 Total: 0.95 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.59 Total: -62.19 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.06 Total: -11.16 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.02 Total: 19.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.64 -9.91 -45.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085698725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.010 kcal (2) G-P(sol) polarization free energy of solvation -35.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds