Wall clock time and date at job start Tue Mar 31 2020 11:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46503 * 120.00045 * 2 1 4 4 C 1.52996 * 109.47040 * 264.02299 * 3 2 1 5 5 H 1.09011 * 112.96568 * 290.47160 * 4 3 2 6 6 C 1.53938 * 113.77090 * 62.15104 * 4 3 2 7 7 C 1.53949 * 86.29192 * 137.90752 * 6 4 3 8 8 N 1.47579 * 113.76999 * 158.64981 * 4 3 2 9 9 C 1.36942 * 134.49463 * 41.05790 * 8 4 3 10 10 H 1.08000 * 119.99997 * 4.66445 * 9 8 4 11 11 C 1.38810 * 120.00083 * 184.66921 * 9 8 4 12 12 N 1.31617 * 119.99917 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00014 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46826 * 60.00119 * 13 11 9 15 15 H 1.48505 * 109.47012 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47499 * 300.00308 * 13 11 9 17 17 C 1.34783 * 120.00184 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00062 * 184.73230 * 17 2 1 19 19 C 1.50697 * 119.99527 * 4.72740 * 17 2 1 20 20 H 1.08996 * 110.26277 * 310.23526 * 19 17 2 21 21 C 1.54342 * 110.29046 * 188.17951 * 19 17 2 22 22 C 1.54365 * 102.38960 * 267.30475 * 21 19 17 23 23 C 1.51219 * 105.12036 * 333.71193 * 22 21 19 24 24 C 1.38746 * 130.69574 * 197.15752 * 23 22 21 25 25 C 1.38575 * 118.55737 * 179.97438 * 24 23 22 26 26 C 1.38223 * 118.99222 * 359.97438 * 25 24 23 27 27 N 1.31690 * 120.80116 * 0.26213 * 26 25 24 28 28 C 1.32300 * 122.02993 * 359.48133 * 27 26 25 29 29 H 1.08994 * 109.47769 * 264.32260 * 1 2 3 30 30 H 1.09004 * 109.46798 * 24.32763 * 1 2 3 31 31 H 1.09001 * 109.47014 * 144.31554 * 1 2 3 32 32 H 1.09005 * 109.47257 * 24.02317 * 3 2 1 33 33 H 1.08999 * 109.47396 * 144.02198 * 3 2 1 34 34 H 1.08998 * 113.74699 * 252.25329 * 6 4 3 35 35 H 1.09000 * 113.74518 * 23.45702 * 6 4 3 36 36 H 1.09007 * 113.76684 * 90.69190 * 7 6 4 37 37 H 1.08996 * 113.77501 * 221.98085 * 7 6 4 38 38 H 0.97006 * 119.99957 * 180.02562 * 12 11 9 39 39 H 1.09001 * 110.81903 * 149.08180 * 21 19 17 40 40 H 1.09001 * 110.82060 * 25.53266 * 21 19 17 41 41 H 1.09002 * 110.31095 * 214.79903 * 22 21 19 42 42 H 1.09008 * 110.30891 * 92.62457 * 22 21 19 43 43 H 1.08005 * 120.71801 * 359.97438 * 24 23 22 44 44 H 1.08001 * 120.50054 * 180.02562 * 25 24 23 45 45 H 1.07998 * 119.60152 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5825 1.6353 -1.4346 5 1 3.3445 0.9769 -1.8519 6 6 1.3754 1.8546 -2.3643 7 6 2.1482 3.0658 -2.9173 8 7 2.8639 3.0712 -1.6266 9 6 3.5240 4.0255 -0.8993 10 1 4.0413 3.7510 0.0081 11 6 3.5280 5.3456 -1.3282 12 7 2.8979 5.6801 -2.4343 13 14 4.4278 6.6474 -0.3357 14 1 5.8676 6.2947 -0.2468 15 1 4.2821 7.9665 -1.0022 16 1 3.8497 6.7159 1.0304 17 6 2.1389 -1.1672 0.0005 18 8 3.3486 -1.1690 0.0872 19 6 1.3892 -2.4701 -0.1065 20 1 0.5747 -2.4975 0.6173 21 6 2.3470 -3.6590 0.1202 22 6 2.7903 -4.0058 -1.3172 23 6 1.6579 -3.5372 -2.2031 24 6 1.3478 -3.8532 -3.5180 25 6 0.2312 -3.2687 -4.0942 26 6 -0.5314 -2.3954 -3.3416 27 7 -0.2044 -2.1150 -2.0971 28 6 0.8506 -2.6558 -1.5099 29 1 -0.3634 -0.1017 1.0225 30 1 -0.3633 0.9365 -0.4234 31 1 -0.3633 -0.8347 -0.5995 32 1 1.5662 2.0528 0.4184 33 1 3.0993 1.1676 0.6037 34 1 1.2313 1.0564 -3.0924 35 1 0.4585 2.1201 -1.8380 36 1 2.7835 2.8291 -3.7709 37 1 1.5268 3.9462 -3.0808 38 1 2.9010 6.6026 -2.7343 39 1 1.8219 -4.4979 0.5768 40 1 3.2010 -3.3582 0.7272 41 1 2.9313 -5.0817 -1.4205 42 1 3.7102 -3.4771 -1.5674 43 1 1.9633 -4.5399 -4.0803 44 1 -0.0394 -3.4927 -5.1154 45 1 -1.4034 -1.9340 -3.7809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085785525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:02 Heat of formation + Delta-G solvation = 69.839137 kcal Electronic energy + Delta-G solvation = -27085.831683 eV Core-core repulsion = 23491.544644 eV Total energy + Delta-G solvation = -3594.287038 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.28154 -39.40511 -37.82124 -36.05920 -35.02616 -32.90733 -32.06779 -29.62779 -29.16736 -27.85049 -27.68158 -25.98410 -23.68207 -23.29865 -22.98341 -21.99632 -21.15483 -19.12730 -18.73570 -17.36109 -16.94773 -16.56577 -16.31848 -15.68088 -15.47418 -14.99033 -14.84626 -14.46939 -13.98963 -13.72870 -13.61332 -13.49672 -13.18128 -12.91758 -12.69398 -12.39497 -12.16567 -12.11424 -11.97911 -11.87714 -11.41889 -11.33468 -11.20869 -10.93856 -10.70551 -10.64282 -10.42584 -10.04443 -9.79805 -9.70027 -9.65695 -9.49909 -9.39074 -8.78401 -8.70483 -8.18732 -6.79000 -5.68483 -3.01755 0.89115 1.10273 2.73113 3.24409 3.44249 3.48263 3.49517 3.61895 3.77986 4.21892 4.51084 4.55662 4.63718 4.71589 4.76236 4.95370 5.03233 5.17093 5.27636 5.38355 5.44107 5.46998 5.53642 5.61849 5.64829 5.67355 5.73106 5.85021 5.90670 5.92485 6.00146 6.05247 6.08939 6.16041 6.29386 6.38026 6.54975 6.57144 6.73603 6.80543 6.91775 7.33116 7.53339 7.66824 7.70457 7.79380 8.07190 8.39929 9.12465 9.78811 10.69551 11.47630 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.003717 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.454191 B = 7532.072796 C = 8147.695975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.596 5.596 3 C 0.118 3.882 4 C 0.133 3.867 5 H 0.043 0.957 6 C -0.151 4.151 7 C 0.156 3.844 8 N -0.601 5.601 9 C -0.221 4.221 10 H 0.077 0.923 11 C -0.007 4.007 12 N -0.922 5.922 13 Si 0.910 3.090 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.523 3.477 18 O -0.536 6.536 19 C -0.060 4.060 20 H 0.110 0.890 21 C -0.104 4.104 22 C -0.079 4.079 23 C -0.137 4.137 24 C -0.066 4.066 25 C -0.168 4.168 26 C 0.104 3.896 27 N -0.468 5.468 28 C 0.126 3.874 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.020 0.980 37 H 0.078 0.922 38 H 0.253 0.747 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.826 -22.277 0.250 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.328 5.328 3 C -0.006 4.006 4 C 0.025 3.975 5 H 0.060 0.940 6 C -0.189 4.189 7 C 0.030 3.970 8 N -0.328 5.328 9 C -0.348 4.348 10 H 0.095 0.905 11 C -0.204 4.204 12 N -0.569 5.569 13 Si 0.740 3.260 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.309 3.691 18 O -0.413 6.413 19 C -0.082 4.082 20 H 0.128 0.872 21 C -0.142 4.142 22 C -0.116 4.116 23 C -0.139 4.139 24 C -0.092 4.092 25 C -0.188 4.188 26 C -0.053 4.053 27 N -0.177 5.177 28 C -0.011 4.011 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.038 0.962 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.150 0.850 44 H 0.155 0.845 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.603 -21.310 0.827 22.996 hybrid contribution 0.976 0.340 -0.261 1.066 sum -7.626 -20.971 0.566 22.321 Atomic orbital electron populations 1.22344 0.79230 1.05753 1.01549 1.47746 1.07299 1.05927 1.71791 1.21793 0.96843 0.83028 0.98905 1.22480 0.94192 0.87944 0.92922 0.93975 1.23682 0.97590 0.98931 0.98733 1.22265 0.91799 0.94898 0.87996 1.46011 1.64559 1.02560 1.19632 1.18982 1.25487 0.86632 1.03729 0.90514 1.24755 1.00967 0.96860 0.97786 1.69817 1.46731 1.17259 1.23078 0.86232 0.79457 0.81058 0.79213 1.21259 1.21613 1.21094 1.20015 0.87608 0.84746 0.76773 1.90684 1.13787 1.86929 1.49936 1.20779 0.98971 0.94983 0.93481 0.87225 1.22259 0.99289 0.95427 0.97209 1.20997 0.96467 1.01358 0.92809 1.21491 0.98204 0.99057 0.95104 1.21074 0.96313 0.98371 0.93425 1.22085 0.96370 0.98960 1.01408 1.22650 0.98894 0.94743 0.89059 1.66646 1.16399 1.22888 1.11733 1.21257 0.91237 0.93287 0.95357 0.93555 0.90733 0.87660 0.89758 0.90899 0.93902 0.90962 0.96220 0.90429 0.93739 0.90156 0.88261 0.90258 0.89055 0.84965 0.84490 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.71 9.60 59.84 0.57 1.29 16 2 N -0.60 -9.69 2.73 -181.58 -0.50 -10.18 16 3 C 0.12 2.31 5.30 -4.04 -0.02 2.29 16 4 C 0.13 2.97 4.56 -66.87 -0.30 2.66 16 5 H 0.04 1.03 8.14 -51.92 -0.42 0.61 16 6 C -0.15 -3.10 7.28 -25.81 -0.19 -3.29 16 7 C 0.16 3.89 7.64 -2.97 -0.02 3.87 16 8 N -0.60 -16.08 3.57 -170.75 -0.61 -16.69 16 9 C -0.22 -6.37 10.51 -15.06 -0.16 -6.53 16 10 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -27.94 11.30 55.49 0.63 -27.32 16 13 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 C 0.52 8.42 6.92 -10.98 -0.08 8.34 16 18 O -0.54 -10.38 15.21 5.56 0.08 -10.29 16 19 C -0.06 -0.72 2.35 -91.84 -0.22 -0.94 16 20 H 0.11 1.11 7.68 -51.93 -0.40 0.71 16 21 C -0.10 -1.04 6.31 -25.31 -0.16 -1.20 16 22 C -0.08 -0.79 6.76 -26.91 -0.18 -0.97 16 23 C -0.14 -1.54 6.16 -104.20 -0.64 -2.19 16 24 C -0.07 -0.63 10.17 -39.27 -0.40 -1.03 16 25 C -0.17 -1.50 10.12 -39.46 -0.40 -1.90 16 26 C 0.10 1.05 11.18 -17.62 -0.20 0.85 16 27 N -0.47 -5.75 7.89 -9.19 -0.07 -5.82 16 28 C 0.13 1.57 6.16 -82.04 -0.51 1.06 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.02 6.55 -51.93 -0.34 0.68 16 31 H 0.11 1.32 3.86 -51.93 -0.20 1.12 16 32 H 0.08 1.68 8.03 -51.93 -0.42 1.26 16 33 H 0.07 1.54 7.54 -51.93 -0.39 1.15 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.41 6.73 -51.93 -0.35 1.07 16 36 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.08 2.10 6.96 -51.93 -0.36 1.74 16 38 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.10 1.10 7.11 -51.93 -0.37 0.73 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 43 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 44 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -34.45 359.85 -9.66 -44.11 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.60 Total: 1.04 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -2.99 Total: 2.02 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.55 Total: -60.01 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.45 -9.66 -44.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085785525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.953 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds