Wall clock time and date at job start Tue Mar 31 2020 11:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46503 * 120.00045 * 2 1 4 4 C 1.52996 * 109.47040 * 264.02299 * 3 2 1 5 5 H 1.09011 * 112.96568 * 290.47160 * 4 3 2 6 6 C 1.53938 * 113.77090 * 62.15104 * 4 3 2 7 7 C 1.53949 * 86.29192 * 137.90752 * 6 4 3 8 8 N 1.47579 * 113.76999 * 158.64981 * 4 3 2 9 9 C 1.36942 * 134.49463 * 41.05790 * 8 4 3 10 10 H 1.08000 * 119.99997 * 4.66445 * 9 8 4 11 11 C 1.38810 * 120.00083 * 184.66921 * 9 8 4 12 12 N 1.31617 * 119.99917 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00014 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46826 * 60.00119 * 13 11 9 15 15 H 1.48505 * 109.47012 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47499 * 300.00308 * 13 11 9 17 17 C 1.34783 * 120.00184 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00062 * 184.73230 * 17 2 1 19 19 C 1.50697 * 119.99527 * 4.72740 * 17 2 1 20 20 H 1.08996 * 110.26277 * 310.23526 * 19 17 2 21 21 C 1.54342 * 110.29046 * 188.17951 * 19 17 2 22 22 C 1.54365 * 102.38960 * 267.30475 * 21 19 17 23 23 C 1.51219 * 105.12036 * 333.71193 * 22 21 19 24 24 C 1.38746 * 130.69574 * 197.15752 * 23 22 21 25 25 C 1.38575 * 118.55737 * 179.97438 * 24 23 22 26 26 C 1.38223 * 118.99222 * 359.97438 * 25 24 23 27 27 N 1.31690 * 120.80116 * 0.26213 * 26 25 24 28 28 C 1.32300 * 122.02993 * 359.48133 * 27 26 25 29 29 H 1.08994 * 109.47769 * 264.32260 * 1 2 3 30 30 H 1.09004 * 109.46798 * 24.32763 * 1 2 3 31 31 H 1.09001 * 109.47014 * 144.31554 * 1 2 3 32 32 H 1.09005 * 109.47257 * 24.02317 * 3 2 1 33 33 H 1.08999 * 109.47396 * 144.02198 * 3 2 1 34 34 H 1.08998 * 113.74699 * 252.25329 * 6 4 3 35 35 H 1.09000 * 113.74518 * 23.45702 * 6 4 3 36 36 H 1.09007 * 113.76684 * 90.69190 * 7 6 4 37 37 H 1.08996 * 113.77501 * 221.98085 * 7 6 4 38 38 H 0.97006 * 119.99957 * 180.02562 * 12 11 9 39 39 H 1.09001 * 110.81903 * 149.08180 * 21 19 17 40 40 H 1.09001 * 110.82060 * 25.53266 * 21 19 17 41 41 H 1.09002 * 110.31095 * 214.79903 * 22 21 19 42 42 H 1.09008 * 110.30891 * 92.62457 * 22 21 19 43 43 H 1.08005 * 120.71801 * 359.97438 * 24 23 22 44 44 H 1.08001 * 120.50054 * 180.02562 * 25 24 23 45 45 H 1.07998 * 119.60152 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5825 1.6353 -1.4346 5 1 3.3445 0.9769 -1.8519 6 6 1.3754 1.8546 -2.3643 7 6 2.1482 3.0658 -2.9173 8 7 2.8639 3.0712 -1.6266 9 6 3.5240 4.0255 -0.8993 10 1 4.0413 3.7510 0.0081 11 6 3.5280 5.3456 -1.3282 12 7 2.8979 5.6801 -2.4343 13 14 4.4278 6.6474 -0.3357 14 1 5.8676 6.2947 -0.2468 15 1 4.2821 7.9665 -1.0022 16 1 3.8497 6.7159 1.0304 17 6 2.1389 -1.1672 0.0005 18 8 3.3486 -1.1690 0.0872 19 6 1.3892 -2.4701 -0.1065 20 1 0.5747 -2.4975 0.6173 21 6 2.3470 -3.6590 0.1202 22 6 2.7903 -4.0058 -1.3172 23 6 1.6579 -3.5372 -2.2031 24 6 1.3478 -3.8532 -3.5180 25 6 0.2312 -3.2687 -4.0942 26 6 -0.5314 -2.3954 -3.3416 27 7 -0.2044 -2.1150 -2.0971 28 6 0.8506 -2.6558 -1.5099 29 1 -0.3634 -0.1017 1.0225 30 1 -0.3633 0.9365 -0.4234 31 1 -0.3633 -0.8347 -0.5995 32 1 1.5662 2.0528 0.4184 33 1 3.0993 1.1676 0.6037 34 1 1.2313 1.0564 -3.0924 35 1 0.4585 2.1201 -1.8380 36 1 2.7835 2.8291 -3.7709 37 1 1.5268 3.9462 -3.0808 38 1 2.9010 6.6026 -2.7343 39 1 1.8219 -4.4979 0.5768 40 1 3.2010 -3.3582 0.7272 41 1 2.9313 -5.0817 -1.4205 42 1 3.7102 -3.4771 -1.5674 43 1 1.9633 -4.5399 -4.0803 44 1 -0.0394 -3.4927 -5.1154 45 1 -1.4034 -1.9340 -3.7809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085785525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:01 Heat of formation + Delta-G solvation = 49.216642 kcal Electronic energy + Delta-G solvation = -27086.725941 eV Core-core repulsion = 23491.544644 eV Total energy + Delta-G solvation = -3595.181297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.19289 -40.65014 -39.54472 -37.01638 -36.35892 -34.27168 -33.66331 -30.70238 -30.16204 -29.89346 -28.86177 -27.21845 -25.35884 -24.58115 -24.35445 -22.92053 -22.23093 -20.97077 -19.96101 -18.85154 -18.25441 -17.84604 -17.25000 -17.02351 -16.91501 -16.32136 -16.17403 -15.80136 -15.52381 -15.19549 -14.65946 -14.41217 -14.33216 -14.05433 -13.95412 -13.85915 -13.76381 -13.32540 -13.24222 -12.96046 -12.88882 -12.65674 -12.58090 -12.38208 -12.34333 -12.14178 -12.02341 -11.82387 -11.64214 -11.37795 -11.08592 -10.85799 -10.60783 -10.26182 -9.63293 -9.58124 -8.93396 -7.90598 -5.26373 0.11524 0.35901 1.43135 1.46879 1.52131 1.53466 1.97716 2.47325 2.81730 2.95951 3.27854 3.37964 3.41248 3.58863 3.82307 3.84885 3.97081 4.11542 4.12248 4.19852 4.25902 4.31377 4.39645 4.47029 4.51708 4.62107 4.62960 4.66360 4.79789 4.82946 4.87945 4.91202 4.96299 4.99613 5.07934 5.17029 5.19138 5.20875 5.28842 5.34673 5.45342 5.52804 5.67665 5.83181 5.92835 6.43146 6.90462 7.01171 7.13214 7.58842 8.54822 9.25001 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.003717 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.454191 B = 7532.072796 C = 8147.695975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.597 5.597 3 C 0.134 3.866 4 C 0.135 3.865 5 H 0.020 0.980 6 C -0.114 4.114 7 C 0.149 3.851 8 N -0.626 5.626 9 C -0.236 4.236 10 H 0.076 0.924 11 C -0.062 4.062 12 N -0.951 5.951 13 Si 0.978 3.022 14 H -0.282 1.282 15 H -0.290 1.290 16 H -0.273 1.273 17 C 0.517 3.483 18 O -0.577 6.577 19 C -0.053 4.053 20 H 0.130 0.870 21 C -0.100 4.100 22 C -0.077 4.077 23 C -0.151 4.151 24 C -0.073 4.073 25 C -0.162 4.162 26 C 0.090 3.910 27 N -0.487 5.487 28 C 0.101 3.899 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.008 0.992 37 H 0.054 0.946 38 H 0.249 0.751 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.156 0.844 44 H 0.168 0.832 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.328 -24.083 0.324 26.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.328 5.328 3 C 0.009 3.991 4 C 0.028 3.972 5 H 0.037 0.963 6 C -0.152 4.152 7 C 0.024 3.976 8 N -0.352 5.352 9 C -0.364 4.364 10 H 0.094 0.906 11 C -0.255 4.255 12 N -0.599 5.599 13 Si 0.805 3.195 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.198 1.198 17 C 0.305 3.695 18 O -0.457 6.457 19 C -0.075 4.075 20 H 0.148 0.852 21 C -0.138 4.138 22 C -0.115 4.115 23 C -0.153 4.153 24 C -0.099 4.099 25 C -0.181 4.181 26 C -0.067 4.067 27 N -0.195 5.195 28 C -0.035 4.035 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.134 0.866 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.025 0.975 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.131 0.869 40 H 0.101 0.899 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.174 0.826 44 H 0.186 0.814 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -10.135 -23.158 0.917 25.295 hybrid contribution 1.441 0.836 -0.376 1.708 sum -8.694 -22.322 0.541 23.961 Atomic orbital electron populations 1.22521 0.76985 1.05959 1.03342 1.47804 1.08492 1.04740 1.71757 1.21325 0.96440 0.84898 0.96402 1.22490 0.94255 0.85431 0.95049 0.96282 1.23385 0.96849 0.97047 0.97943 1.22233 0.91976 0.95947 0.87427 1.46382 1.64487 1.04118 1.20250 1.19311 1.25523 0.87589 1.04013 0.90577 1.25594 1.02059 0.98838 0.98985 1.70001 1.48035 1.17337 1.24573 0.85174 0.78190 0.77983 0.78110 1.20878 1.21635 1.19824 1.20826 0.87390 0.85920 0.75344 1.90662 1.15822 1.87670 1.51561 1.20792 0.99395 0.92846 0.94502 0.85184 1.22305 0.98642 0.95635 0.97239 1.20988 0.95115 1.02729 0.92652 1.21730 0.98285 0.99254 0.96015 1.21465 0.96814 0.98619 0.92990 1.22472 0.95425 0.97608 1.02603 1.23171 0.99832 0.95081 0.88624 1.66594 1.16623 1.23484 1.12837 1.21298 0.92184 0.94537 0.95529 0.91182 0.91157 0.86585 0.89861 0.93073 0.91760 0.89417 0.97454 0.92724 0.94169 0.86918 0.89879 0.87520 0.91493 0.82621 0.81421 0.80033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.31 9.60 127.77 1.23 2.54 16 2 N -0.60 -19.07 2.73 -846.77 -2.31 -21.39 16 3 C 0.13 5.34 5.30 86.38 0.46 5.80 16 4 C 0.13 6.15 4.56 45.09 0.21 6.35 16 5 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 6 C -0.11 -4.62 7.28 31.25 0.23 -4.40 16 7 C 0.15 7.63 7.64 86.48 0.66 8.29 16 8 N -0.63 -34.26 3.57 -694.14 -2.48 -36.74 16 9 C -0.24 -13.92 10.51 84.03 0.88 -13.03 16 10 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 11 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 12 N -0.95 -58.80 11.30 21.65 0.24 -58.56 16 13 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 14 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 15 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 16 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 17 C 0.52 16.59 6.92 87.66 0.61 17.20 16 18 O -0.58 -23.05 15.21 -3.03 -0.05 -23.10 16 19 C -0.05 -1.22 2.35 -11.59 -0.03 -1.24 16 20 H 0.13 2.34 7.68 -2.39 -0.02 2.32 16 21 C -0.10 -1.87 6.31 31.51 0.20 -1.67 16 22 C -0.08 -1.46 6.76 30.48 0.21 -1.25 16 23 C -0.15 -3.14 6.16 -19.59 -0.12 -3.26 16 24 C -0.07 -1.21 10.17 22.47 0.23 -0.98 16 25 C -0.16 -2.36 10.12 22.35 0.23 -2.13 16 26 C 0.09 1.57 11.18 84.71 0.95 2.52 16 27 N -0.49 -10.87 7.89 -182.99 -1.44 -12.32 16 28 C 0.10 2.35 6.16 42.72 0.26 2.61 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.78 6.55 -2.38 -0.02 1.77 16 31 H 0.12 2.66 3.86 -2.39 -0.01 2.65 16 32 H 0.08 3.32 8.03 -2.38 -0.02 3.30 16 33 H 0.05 2.24 7.54 -2.39 -0.02 2.23 16 34 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.09 3.31 6.73 -2.39 -0.02 3.29 16 36 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 37 H 0.05 3.03 6.96 -2.39 -0.02 3.02 16 38 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 39 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.84 7.11 -2.39 -0.02 1.82 16 41 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 45 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -76.76 359.85 3.64 -73.12 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.99 Total: 15.54 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.66 Total: 14.17 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -5.99 Total: -129.00 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.05 Total: -23.10 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -76.76 3.64 -73.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085785525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.341 kcal (2) G-P(sol) polarization free energy of solvation -76.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds