Wall clock time and date at job start Tue Mar 31 2020 11:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 120.00396 * 2 1 4 4 C 1.53004 * 109.47152 * 277.19118 * 3 2 1 5 5 H 1.08995 * 112.96767 * 51.93362 * 4 3 2 6 6 C 1.53940 * 113.77037 * 183.62150 * 4 3 2 7 7 C 1.53944 * 86.29248 * 137.90392 * 6 4 3 8 8 N 1.47582 * 86.11658 * 336.38855 * 7 6 4 9 9 C 1.36934 * 134.49298 * 204.63323 * 8 7 6 10 10 H 1.07999 * 119.99987 * 198.11690 * 9 8 7 11 11 C 1.38810 * 119.99828 * 18.12579 * 9 8 7 12 12 N 1.31613 * 120.00332 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99763 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47302 * 59.99398 * 13 11 9 15 15 H 1.48500 * 109.47134 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47095 * 299.99454 * 13 11 9 17 17 C 1.34783 * 119.99798 * 179.97438 * 2 1 3 18 18 O 1.21510 * 119.99782 * 176.75582 * 17 2 1 19 19 C 1.48166 * 119.99852 * 357.03273 * 17 2 1 20 20 C 1.39307 * 119.71940 * 173.06248 * 19 17 2 21 21 C 1.38597 * 119.05814 * 179.97438 * 20 19 17 22 22 C 1.38624 * 118.48508 * 359.97438 * 21 20 19 23 23 C 1.50700 * 120.32134 * 179.97438 * 22 21 20 24 24 C 1.53001 * 117.50073 * 188.62606 * 23 22 21 25 25 C 1.52998 * 60.00040 * 252.50841 * 24 23 22 26 26 C 1.38560 * 119.35366 * 0.02562 * 22 21 20 27 27 N 1.31517 * 120.90239 * 359.73397 * 26 22 21 28 28 H 1.08994 * 109.46968 * 264.16580 * 1 2 3 29 29 H 1.09000 * 109.46615 * 24.16452 * 1 2 3 30 30 H 1.08998 * 109.47272 * 144.15829 * 1 2 3 31 31 H 1.08998 * 109.46840 * 37.18232 * 3 2 1 32 32 H 1.08993 * 109.47700 * 157.18659 * 3 2 1 33 33 H 1.09001 * 113.73860 * 252.24797 * 6 4 3 34 34 H 1.09004 * 113.74202 * 23.44935 * 6 4 3 35 35 H 1.08994 * 113.76976 * 90.69636 * 7 6 4 36 36 H 1.09007 * 113.77007 * 221.97812 * 7 6 4 37 37 H 0.96997 * 120.00297 * 180.02562 * 12 11 9 38 38 H 1.07993 * 120.47456 * 359.95433 * 20 19 17 39 39 H 1.08001 * 120.75855 * 179.97438 * 21 20 19 40 40 H 1.09004 * 115.55307 * 334.32797 * 23 22 21 41 41 H 1.09009 * 117.49770 * 0.02562 * 24 23 22 42 42 H 1.09002 * 117.50207 * 145.01368 * 24 23 22 43 43 H 1.08991 * 117.49627 * 252.50474 * 25 24 23 44 44 H 1.09002 * 117.51523 * 107.48101 * 25 24 23 45 45 H 1.07999 * 119.54454 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.2963 1.8006 -1.4312 5 1 1.3308 1.8482 -1.9347 6 6 3.1264 3.0908 -1.5577 7 6 3.7323 2.4580 -2.8235 8 7 3.3567 1.1590 -2.2324 9 6 3.8100 -0.1257 -2.3715 10 1 3.1929 -0.9533 -2.0546 11 6 5.0628 -0.3640 -2.9197 12 7 5.8148 0.6446 -3.3062 13 14 5.6814 -2.1165 -3.1088 14 1 4.7552 -2.8764 -3.9863 15 1 7.0364 -2.1003 -3.7161 16 1 5.7441 -2.7660 -1.7748 17 6 2.1389 -1.1673 0.0005 18 8 3.3525 -1.1681 -0.0590 19 6 1.3995 -2.4495 0.0675 20 6 2.0876 -3.6520 -0.0780 21 6 1.3824 -4.8433 -0.0125 22 6 0.0131 -4.7904 0.1970 23 6 -0.7943 -6.0605 0.2747 24 6 -2.3183 -5.9282 0.3043 25 6 -1.5607 -6.3323 1.5707 26 6 -0.6061 -3.5584 0.3331 27 7 0.0881 -2.4430 0.2713 28 1 -0.3633 -0.1045 1.0223 29 1 -0.3632 0.9376 -0.4207 30 1 -0.3634 -0.8330 -0.6017 31 1 1.6702 1.9927 0.6211 32 1 3.1996 1.1097 0.3984 33 1 2.5279 3.9801 -1.7552 34 1 3.8437 3.2322 -0.7493 35 1 3.1895 2.6981 -3.7377 36 1 4.8083 2.6057 -2.9166 37 1 6.6900 0.4780 -3.6896 38 1 3.1553 -3.6559 -0.2399 39 1 1.8882 -5.7913 -0.1220 40 1 -0.3735 -6.9180 -0.2504 41 1 -2.7369 -4.9224 0.2672 42 1 -2.9004 -6.6985 -0.2015 43 1 -1.6444 -7.3685 1.8980 44 1 -1.4807 -5.5926 2.3673 45 1 -1.6727 -3.5136 0.4967 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085951323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:20 Heat of formation + Delta-G solvation = 115.015703 kcal Electronic energy + Delta-G solvation = -26851.162060 eV Core-core repulsion = 23258.834024 eV Total energy + Delta-G solvation = -3592.328035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.69925 -39.06162 -37.62507 -36.98676 -34.90710 -32.50532 -31.90961 -31.01232 -28.31851 -27.62002 -26.19577 -24.76028 -23.85662 -23.12637 -22.60354 -22.32235 -20.89327 -19.54861 -18.88121 -17.16857 -17.06545 -16.70389 -15.90223 -15.46916 -15.02492 -14.97435 -14.70312 -14.56849 -14.03591 -13.73831 -13.66308 -13.28929 -13.10717 -12.79524 -12.54772 -12.31553 -11.96077 -11.87431 -11.63338 -11.41797 -11.30369 -11.23105 -10.88206 -10.72925 -10.68596 -10.51496 -10.43082 -9.82416 -9.72722 -9.64256 -9.53234 -9.31253 -8.94520 -8.80045 -8.38959 -7.87574 -6.51844 -5.51249 -2.84039 0.73922 1.24947 3.07619 3.48451 3.53340 3.57706 3.61869 3.62911 4.08446 4.17750 4.37044 4.51346 4.63713 4.65822 4.75214 4.83388 4.92564 5.24835 5.28741 5.29142 5.36437 5.53174 5.63239 5.68675 5.69817 5.74797 5.80234 5.82158 5.92282 5.94874 6.08849 6.11533 6.15115 6.16891 6.33598 6.47829 6.53316 6.65209 6.82549 6.87158 7.19870 7.42159 7.68936 7.77692 7.84811 8.03662 8.28977 8.85446 9.30728 9.98098 10.86177 11.63882 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.004375 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.118810 B = 6398.776237 C = 7774.587819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.595 5.595 3 C 0.118 3.882 4 C 0.123 3.877 5 H 0.042 0.958 6 C -0.153 4.153 7 C 0.138 3.862 8 N -0.594 5.594 9 C -0.180 4.180 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.923 5.923 13 Si 0.901 3.099 14 H -0.291 1.291 15 H -0.294 1.294 16 H -0.279 1.279 17 C 0.544 3.456 18 O -0.476 6.476 19 C 0.089 3.911 20 C -0.110 4.110 21 C -0.077 4.077 22 C -0.095 4.095 23 C -0.115 4.115 24 C -0.175 4.175 25 C -0.168 4.168 26 C 0.086 3.914 27 N -0.448 5.448 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.017 0.983 36 H 0.086 0.914 37 H 0.248 0.752 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.587 -8.845 9.567 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.328 5.328 3 C -0.006 4.006 4 C 0.015 3.985 5 H 0.059 0.941 6 C -0.192 4.192 7 C 0.013 3.987 8 N -0.320 5.320 9 C -0.308 4.308 10 H 0.096 0.904 11 C -0.203 4.203 12 N -0.572 5.572 13 Si 0.732 3.268 14 H -0.218 1.218 15 H -0.220 1.220 16 H -0.206 1.206 17 C 0.329 3.671 18 O -0.347 6.347 19 C -0.049 4.049 20 C -0.130 4.130 21 C -0.103 4.103 22 C -0.097 4.097 23 C -0.134 4.134 24 C -0.211 4.211 25 C -0.205 4.205 26 C -0.073 4.073 27 N -0.160 5.160 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.034 0.966 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.167 0.833 39 H 0.156 0.844 40 H 0.133 0.867 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.043 -8.249 9.540 20.407 hybrid contribution 0.593 -1.855 -0.441 1.997 sum -15.449 -10.105 9.099 20.581 Atomic orbital electron populations 1.21975 0.79459 1.01963 1.01526 1.47447 1.06879 1.05633 1.72890 1.21890 0.97655 0.83118 0.97904 1.22722 0.93206 0.91388 0.91206 0.94087 1.23719 0.99220 0.95156 1.01150 1.22453 1.00909 0.84075 0.91282 1.45880 1.36070 1.03858 1.46149 1.19026 0.97239 0.81508 1.33050 0.90411 1.24797 0.96090 0.96766 1.02624 1.69782 1.10940 1.28719 1.47715 0.86345 0.77546 0.85160 0.77755 1.21845 1.21999 1.20558 1.17741 0.86958 0.82638 0.79761 1.90980 1.12188 1.85934 1.45615 1.21493 0.89883 0.94804 0.98754 1.22189 1.02558 0.91605 0.96681 1.21384 0.93157 0.98672 0.97068 1.20250 0.94226 0.94911 1.00337 1.20949 0.93049 0.96651 1.02764 1.23076 0.93152 1.03387 1.01529 1.23044 1.03295 1.02796 0.91337 1.22722 1.00213 0.87175 0.97189 1.68170 1.07145 1.29795 1.10874 0.93322 0.92877 0.89471 0.91775 0.89072 0.93454 0.90695 0.96569 0.89590 0.94158 0.83316 0.84402 0.86661 0.88152 0.88208 0.88307 0.88458 0.82669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 9.17 59.85 0.55 1.94 16 2 N -0.60 -11.16 2.88 -182.58 -0.53 -11.68 16 3 C 0.12 2.25 5.31 -4.04 -0.02 2.23 16 4 C 0.12 2.60 4.53 -66.86 -0.30 2.30 16 5 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.15 -3.04 7.86 -25.81 -0.20 -3.25 16 7 C 0.14 3.40 8.00 -2.97 -0.02 3.38 16 8 N -0.59 -15.84 3.53 -170.75 -0.60 -16.44 16 9 C -0.18 -5.30 8.38 -15.06 -0.13 -5.43 16 10 H 0.08 2.30 4.96 -52.49 -0.26 2.04 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 12 N -0.92 -28.89 11.29 55.49 0.63 -28.26 16 13 Si 0.90 24.09 29.55 -169.99 -5.02 19.06 16 14 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 15 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 16 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 17 C 0.54 11.36 6.23 -12.18 -0.08 11.29 16 18 O -0.48 -11.86 12.49 5.36 0.07 -11.79 16 19 C 0.09 1.56 6.58 -83.01 -0.55 1.02 16 20 C -0.11 -1.79 9.63 -39.05 -0.38 -2.16 16 21 C -0.08 -0.97 9.88 -39.31 -0.39 -1.36 16 22 C -0.09 -1.06 5.63 -104.36 -0.59 -1.65 16 23 C -0.12 -0.95 6.06 -91.77 -0.56 -1.50 16 24 C -0.17 -1.15 9.87 -26.73 -0.26 -1.42 16 25 C -0.17 -1.14 10.17 -26.73 -0.27 -1.41 16 26 C 0.09 1.02 10.47 -17.57 -0.18 0.84 16 27 N -0.45 -6.66 6.14 -9.80 -0.06 -6.72 16 28 H 0.05 0.65 8.05 -51.93 -0.42 0.23 16 29 H 0.05 0.70 8.03 -51.93 -0.42 0.29 16 30 H 0.09 1.33 5.64 -51.93 -0.29 1.04 16 31 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 32 H 0.09 2.03 7.26 -51.93 -0.38 1.65 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 2.37 6.58 -51.92 -0.34 2.02 16 37 H 0.25 7.59 8.31 -40.82 -0.34 7.26 16 38 H 0.15 2.61 7.66 -52.49 -0.40 2.21 16 39 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 40 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 0.63 6.20 -51.92 -0.32 0.31 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.16 1.38 6.03 -52.49 -0.32 1.07 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -35.14 360.45 -10.07 -45.20 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.51 Total: 0.72 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -3.47 Total: 4.48 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.56 Total: -63.11 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.07 Total: -11.79 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.02 Total: 19.06 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.14 -10.07 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085951323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.220 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds