Wall clock time and date at job start Tue Mar 31 2020 11:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 120.00396 * 2 1 4 4 C 1.53004 * 109.47152 * 277.19118 * 3 2 1 5 5 H 1.08995 * 112.96767 * 51.93362 * 4 3 2 6 6 C 1.53940 * 113.77037 * 183.62150 * 4 3 2 7 7 C 1.53944 * 86.29248 * 137.90392 * 6 4 3 8 8 N 1.47582 * 86.11658 * 336.38855 * 7 6 4 9 9 C 1.36934 * 134.49298 * 204.63323 * 8 7 6 10 10 H 1.07999 * 119.99987 * 198.11690 * 9 8 7 11 11 C 1.38810 * 119.99828 * 18.12579 * 9 8 7 12 12 N 1.31613 * 120.00332 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99763 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47302 * 59.99398 * 13 11 9 15 15 H 1.48500 * 109.47134 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47095 * 299.99454 * 13 11 9 17 17 C 1.34783 * 119.99798 * 179.97438 * 2 1 3 18 18 O 1.21510 * 119.99782 * 176.75582 * 17 2 1 19 19 C 1.48166 * 119.99852 * 357.03273 * 17 2 1 20 20 C 1.39307 * 119.71940 * 173.06248 * 19 17 2 21 21 C 1.38597 * 119.05814 * 179.97438 * 20 19 17 22 22 C 1.38624 * 118.48508 * 359.97438 * 21 20 19 23 23 C 1.50700 * 120.32134 * 179.97438 * 22 21 20 24 24 C 1.53001 * 117.50073 * 188.62606 * 23 22 21 25 25 C 1.52998 * 60.00040 * 252.50841 * 24 23 22 26 26 C 1.38560 * 119.35366 * 0.02562 * 22 21 20 27 27 N 1.31517 * 120.90239 * 359.73397 * 26 22 21 28 28 H 1.08994 * 109.46968 * 264.16580 * 1 2 3 29 29 H 1.09000 * 109.46615 * 24.16452 * 1 2 3 30 30 H 1.08998 * 109.47272 * 144.15829 * 1 2 3 31 31 H 1.08998 * 109.46840 * 37.18232 * 3 2 1 32 32 H 1.08993 * 109.47700 * 157.18659 * 3 2 1 33 33 H 1.09001 * 113.73860 * 252.24797 * 6 4 3 34 34 H 1.09004 * 113.74202 * 23.44935 * 6 4 3 35 35 H 1.08994 * 113.76976 * 90.69636 * 7 6 4 36 36 H 1.09007 * 113.77007 * 221.97812 * 7 6 4 37 37 H 0.96997 * 120.00297 * 180.02562 * 12 11 9 38 38 H 1.07993 * 120.47456 * 359.95433 * 20 19 17 39 39 H 1.08001 * 120.75855 * 179.97438 * 21 20 19 40 40 H 1.09004 * 115.55307 * 334.32797 * 23 22 21 41 41 H 1.09009 * 117.49770 * 0.02562 * 24 23 22 42 42 H 1.09002 * 117.50207 * 145.01368 * 24 23 22 43 43 H 1.08991 * 117.49627 * 252.50474 * 25 24 23 44 44 H 1.09002 * 117.51523 * 107.48101 * 25 24 23 45 45 H 1.07999 * 119.54454 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.2963 1.8006 -1.4312 5 1 1.3308 1.8482 -1.9347 6 6 3.1264 3.0908 -1.5577 7 6 3.7323 2.4580 -2.8235 8 7 3.3567 1.1590 -2.2324 9 6 3.8100 -0.1257 -2.3715 10 1 3.1929 -0.9533 -2.0546 11 6 5.0628 -0.3640 -2.9197 12 7 5.8148 0.6446 -3.3062 13 14 5.6814 -2.1165 -3.1088 14 1 4.7552 -2.8764 -3.9863 15 1 7.0364 -2.1003 -3.7161 16 1 5.7441 -2.7660 -1.7748 17 6 2.1389 -1.1673 0.0005 18 8 3.3525 -1.1681 -0.0590 19 6 1.3995 -2.4495 0.0675 20 6 2.0876 -3.6520 -0.0780 21 6 1.3824 -4.8433 -0.0125 22 6 0.0131 -4.7904 0.1970 23 6 -0.7943 -6.0605 0.2747 24 6 -2.3183 -5.9282 0.3043 25 6 -1.5607 -6.3323 1.5707 26 6 -0.6061 -3.5584 0.3331 27 7 0.0881 -2.4430 0.2713 28 1 -0.3633 -0.1045 1.0223 29 1 -0.3632 0.9376 -0.4207 30 1 -0.3634 -0.8330 -0.6017 31 1 1.6702 1.9927 0.6211 32 1 3.1996 1.1097 0.3984 33 1 2.5279 3.9801 -1.7552 34 1 3.8437 3.2322 -0.7493 35 1 3.1895 2.6981 -3.7377 36 1 4.8083 2.6057 -2.9166 37 1 6.6900 0.4780 -3.6896 38 1 3.1553 -3.6559 -0.2399 39 1 1.8882 -5.7913 -0.1220 40 1 -0.3735 -6.9180 -0.2504 41 1 -2.7369 -4.9224 0.2672 42 1 -2.9004 -6.6985 -0.2015 43 1 -1.6444 -7.3685 1.8980 44 1 -1.4807 -5.5926 2.3673 45 1 -1.6727 -3.5136 0.4967 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085951323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:19 Heat of formation + Delta-G solvation = 93.178379 kcal Electronic energy + Delta-G solvation = -26852.108997 eV Core-core repulsion = 23258.834024 eV Total energy + Delta-G solvation = -3593.274973 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.86917 -40.48465 -39.22174 -37.90461 -36.44310 -34.12601 -33.54427 -32.13767 -29.96013 -29.55923 -27.50135 -25.94788 -25.19516 -24.87852 -23.85689 -23.11841 -21.78875 -20.95501 -20.71674 -18.78873 -18.39009 -18.15598 -17.02625 -16.97958 -16.51357 -16.31417 -15.92254 -15.79446 -15.67339 -15.42747 -15.03001 -14.48208 -14.46526 -14.30407 -13.82211 -13.76291 -13.37525 -13.07690 -12.91695 -12.82274 -12.72699 -12.58592 -12.37308 -12.36179 -12.28157 -12.00278 -11.72684 -11.41332 -11.33241 -11.30017 -11.10710 -10.80285 -10.60388 -10.18322 -9.81027 -9.42043 -8.61109 -7.76496 -5.09797 -0.39640 0.18726 1.32870 1.39563 1.47032 1.81789 2.10629 2.53181 2.73515 3.06454 3.12666 3.42787 3.46836 3.53823 3.70794 3.85553 3.88616 4.01085 4.02621 4.15421 4.26118 4.32282 4.34587 4.42096 4.51923 4.53808 4.68013 4.73560 4.86531 4.89364 4.95133 4.99990 5.04851 5.09134 5.09994 5.14474 5.19471 5.29161 5.29646 5.44817 5.56979 5.67719 5.79588 5.87101 6.15568 6.48693 6.72193 7.07906 7.34374 7.77356 8.71600 9.38334 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.004375 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.118810 B = 6398.776237 C = 7774.587819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.596 5.596 3 C 0.123 3.877 4 C 0.125 3.875 5 H 0.059 0.941 6 C -0.124 4.124 7 C 0.126 3.874 8 N -0.627 5.627 9 C -0.166 4.166 10 H 0.071 0.929 11 C -0.072 4.072 12 N -0.957 5.957 13 Si 0.949 3.051 14 H -0.283 1.283 15 H -0.294 1.294 16 H -0.285 1.285 17 C 0.537 3.463 18 O -0.536 6.536 19 C 0.057 3.943 20 C -0.129 4.129 21 C -0.078 4.078 22 C -0.074 4.074 23 C -0.134 4.134 24 C -0.164 4.164 25 C -0.159 4.159 26 C 0.086 3.914 27 N -0.447 5.447 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.019 0.981 36 H 0.049 0.951 37 H 0.239 0.761 38 H 0.122 0.878 39 H 0.164 0.836 40 H 0.127 0.873 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.980 -9.956 10.836 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.328 5.328 3 C -0.001 4.001 4 C 0.018 3.982 5 H 0.077 0.923 6 C -0.162 4.162 7 C 0.001 3.999 8 N -0.353 5.353 9 C -0.296 4.296 10 H 0.089 0.911 11 C -0.263 4.263 12 N -0.608 5.608 13 Si 0.780 3.220 14 H -0.210 1.210 15 H -0.220 1.220 16 H -0.212 1.212 17 C 0.324 3.676 18 O -0.412 6.412 19 C -0.079 4.079 20 C -0.150 4.150 21 C -0.103 4.103 22 C -0.076 4.076 23 C -0.153 4.153 24 C -0.201 4.201 25 C -0.196 4.196 26 C -0.074 4.074 27 N -0.159 5.159 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.130 0.870 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.037 0.963 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.140 0.860 39 H 0.181 0.819 40 H 0.145 0.855 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.113 0.887 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -20.511 -9.344 10.827 25.005 hybrid contribution 1.677 -1.617 -0.723 2.439 sum -18.834 -10.962 10.105 24.020 Atomic orbital electron populations 1.22152 0.76738 1.02981 1.02843 1.47658 1.08572 1.04909 1.71681 1.21774 0.96790 0.84417 0.97102 1.22927 0.92593 0.91088 0.91581 0.92349 1.23454 0.98645 0.96168 0.97952 1.22463 0.99194 0.84476 0.93741 1.46287 1.37780 1.03468 1.47747 1.19168 0.96832 0.82986 1.30569 0.91125 1.25423 0.96921 0.99644 1.04360 1.69957 1.10941 1.29818 1.50106 0.85549 0.77070 0.82085 0.77285 1.20973 1.21988 1.21197 1.18365 0.86706 0.84280 0.78244 1.90936 1.14650 1.86963 1.48646 1.21065 0.91149 0.93481 1.02254 1.22126 1.01656 0.92993 0.98216 1.21662 0.93995 0.98240 0.96422 1.20622 0.93725 0.96294 0.96984 1.21029 0.94018 0.95407 1.04828 1.23219 0.91586 1.04304 1.00982 1.23126 1.01956 1.03740 0.90797 1.23369 1.01583 0.86614 0.95818 1.68110 1.05646 1.31291 1.10873 0.91437 0.90713 0.89884 0.86978 0.92928 0.88766 0.90893 0.96276 0.93244 0.95160 0.86027 0.81854 0.85536 0.87540 0.86686 0.86787 0.88732 0.79062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.54 9.17 127.77 1.17 3.71 16 2 N -0.60 -21.95 2.88 -849.84 -2.45 -24.40 16 3 C 0.12 4.57 5.31 86.38 0.46 5.03 16 4 C 0.12 5.10 4.53 45.09 0.20 5.31 16 5 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 6 C -0.12 -4.68 7.86 31.25 0.25 -4.44 16 7 C 0.13 6.34 8.00 86.48 0.69 7.03 16 8 N -0.63 -34.14 3.53 -694.13 -2.45 -36.59 16 9 C -0.17 -10.18 8.38 84.03 0.70 -9.48 16 10 H 0.07 4.38 4.96 -2.91 -0.01 4.37 16 11 C -0.07 -4.60 5.50 84.86 0.47 -4.13 16 12 N -0.96 -63.02 11.29 21.65 0.24 -62.78 16 13 Si 0.95 52.17 29.55 68.60 2.03 54.20 16 14 H -0.28 -14.89 7.11 99.48 0.71 -14.18 16 15 H -0.29 -15.90 7.11 99.48 0.71 -15.19 16 16 H -0.29 -15.71 7.11 99.48 0.71 -15.00 16 17 C 0.54 23.17 6.23 86.88 0.54 23.71 16 18 O -0.54 -28.44 12.49 -3.75 -0.05 -28.48 16 19 C 0.06 2.03 6.58 41.91 0.28 2.31 16 20 C -0.13 -4.34 9.63 22.61 0.22 -4.12 16 21 C -0.08 -1.87 9.88 22.45 0.22 -1.65 16 22 C -0.07 -1.45 5.63 -19.70 -0.11 -1.56 16 23 C -0.13 -1.68 6.06 -11.54 -0.07 -1.75 16 24 C -0.16 -1.40 9.87 30.59 0.30 -1.10 16 25 C -0.16 -1.48 10.17 30.59 0.31 -1.17 16 26 C 0.09 1.78 10.47 84.82 0.89 2.67 16 27 N -0.45 -12.57 6.14 -184.92 -1.13 -13.70 16 28 H 0.07 1.57 8.05 -2.39 -0.02 1.55 16 29 H 0.07 1.68 8.03 -2.39 -0.02 1.66 16 30 H 0.08 2.34 5.64 -2.39 -0.01 2.33 16 31 H 0.11 3.08 8.12 -2.39 -0.02 3.06 16 32 H 0.05 2.40 7.26 -2.39 -0.02 2.38 16 33 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.07 2.81 8.10 -2.38 -0.02 2.79 16 35 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 2.84 6.58 -2.38 -0.02 2.83 16 37 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.12 4.67 7.66 -2.91 -0.02 4.65 16 39 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 40 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.11 0.79 6.20 -2.38 -0.01 0.77 16 42 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.19 2.50 6.03 -2.91 -0.02 2.49 16 Total: -1.00 -83.36 360.45 3.71 -79.65 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.00 Total: 11.74 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 6.52 Total: 20.36 kcal Atomic # 7 Polarization: -131.68 SS G_CDS: -5.79 Total: -137.47 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.05 Total: -28.48 kcal Atomic # 14 Polarization: 52.17 SS G_CDS: 2.03 Total: 54.20 kcal Total: -83.36 3.71 -79.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085951323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.833 kcal (2) G-P(sol) polarization free energy of solvation -83.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds