Wall clock time and date at job start Tue Mar 31 2020 11:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 120.00188 * 2 1 4 4 C 1.50704 * 109.46880 * 269.99887 * 3 2 1 5 5 O 1.21275 * 119.99943 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99578 * 180.02562 * 4 3 2 7 7 C 1.46501 * 119.99801 * 179.97438 * 6 4 3 8 8 H 1.09009 * 115.51372 * 9.58282 * 7 6 4 9 9 C 1.53000 * 117.44045 * 224.23994 * 7 6 4 10 10 H 1.08994 * 119.54491 * 4.11835 * 9 7 6 11 11 C 1.54388 * 118.11761 * 160.80812 * 9 7 6 12 12 N 1.48151 * 104.61569 * 87.19260 * 11 9 7 13 13 C 1.36936 * 127.83425 * 140.41411 * 12 11 9 14 14 H 1.08007 * 119.99476 * 195.60912 * 13 12 11 15 15 C 1.38810 * 120.00735 * 15.61329 * 13 12 11 16 16 N 1.31625 * 119.99545 * 9.10858 * 15 13 12 17 17 Si 1.86796 * 120.00186 * 189.10897 * 15 13 12 18 18 H 1.48491 * 109.47419 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46878 * 120.00337 * 17 15 13 20 20 H 1.48498 * 109.47083 * 239.99766 * 17 15 13 21 21 C 1.48146 * 104.32240 * 320.40968 * 12 11 9 22 22 C 1.52991 * 117.44141 * 154.99791 * 7 6 4 23 23 H 1.09000 * 119.54197 * 354.29229 * 22 7 6 24 24 C 1.39676 * 119.99512 * 179.97438 * 2 1 3 25 25 C 1.38911 * 120.08035 * 359.97438 * 24 2 1 26 26 C 1.38096 * 119.93085 * 179.97438 * 25 24 2 27 27 C 1.38290 * 120.07298 * 0.27337 * 26 25 24 28 28 C 1.38293 * 120.14909 * 359.45246 * 27 26 25 29 29 C 1.38105 * 120.07048 * 0.55108 * 28 27 26 30 30 H 1.08998 * 109.47068 * 270.00507 * 1 2 3 31 31 H 1.08994 * 109.46588 * 30.00203 * 1 2 3 32 32 H 1.08993 * 109.47023 * 149.99914 * 1 2 3 33 33 H 1.08994 * 109.47162 * 30.00278 * 3 2 1 34 34 H 1.08998 * 109.47176 * 150.00158 * 3 2 1 35 35 H 0.96996 * 120.00087 * 0.02562 * 6 4 3 36 36 H 1.08997 * 110.41265 * 328.40378 * 11 9 7 37 37 H 1.09000 * 110.50704 * 206.02256 * 11 9 7 38 38 H 0.96997 * 119.99381 * 179.97438 * 16 15 13 39 39 H 1.08994 * 110.40467 * 280.80140 * 21 12 11 40 40 H 1.08997 * 110.40520 * 158.37323 * 21 12 11 41 41 H 1.08000 * 120.03322 * 359.95979 * 25 24 2 42 42 H 1.08002 * 119.97074 * 180.02562 * 26 25 24 43 43 H 1.07997 * 119.92988 * 179.70171 * 27 26 25 44 44 H 1.07998 * 119.96301 * 180.25184 * 28 27 26 45 45 H 1.07998 * 120.03680 * 179.75248 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 8 2.0551 1.0209 -2.3426 6 7 3.1118 2.8510 -1.6671 7 6 3.3565 3.2736 -3.0483 8 1 2.8356 2.6990 -3.8144 9 6 4.7533 3.7971 -3.3885 10 1 5.5341 3.7785 -2.6283 11 6 5.1804 3.8202 -4.8720 12 7 4.6930 5.1234 -5.3811 13 6 5.3248 5.9767 -6.2458 14 1 4.9847 6.9973 -6.3423 15 6 6.4022 5.5302 -6.9986 16 7 6.7051 4.2494 -7.0188 17 14 7.4222 6.7468 -7.9828 18 1 6.8795 8.1158 -7.7924 19 1 8.8311 6.7038 -7.5152 20 1 7.3674 6.3879 -9.4227 21 6 3.3672 5.2937 -4.7424 22 6 3.5577 4.7686 -3.3031 23 1 3.4225 5.4762 -2.4850 24 6 2.1633 -1.2097 0.0005 25 6 1.4704 -2.4136 0.0016 26 6 2.1639 -3.6078 0.0016 27 6 3.5468 -3.6061 0.0063 28 6 4.2399 -2.4094 -0.0005 29 6 3.5525 -1.2116 -0.0005 30 1 -0.3633 0.0001 1.0276 31 1 -0.3632 0.8899 -0.5139 32 1 -0.3633 -0.8899 -0.5138 33 1 1.6086 2.0283 0.5138 34 1 3.1500 1.1383 0.5138 35 1 3.4276 3.3964 -0.9299 36 1 4.7110 3.0003 -5.4155 37 1 6.2653 3.7603 -4.9580 38 1 7.4577 3.9374 -7.5451 39 1 2.6147 4.7039 -5.2656 40 1 3.0844 6.3463 -4.7286 41 1 0.3904 -2.4157 0.0027 42 1 1.6257 -4.5442 0.0020 43 1 4.0867 -4.5413 0.0111 44 1 5.3198 -2.4116 -0.0010 45 1 4.0943 -0.2773 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115343058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:48 Heat of formation + Delta-G solvation = 51.236918 kcal Electronic energy + Delta-G solvation = -25447.521613 eV Core-core repulsion = 21852.427922 eV Total energy + Delta-G solvation = -3595.093691 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.30505 -40.44250 -39.56016 -36.88678 -36.03653 -34.36199 -32.36516 -31.92218 -30.88829 -29.57592 -28.94900 -27.59773 -26.04765 -23.82046 -23.10596 -22.21163 -21.93262 -21.15079 -20.88463 -18.90192 -18.68036 -18.23808 -17.70881 -16.81747 -16.59239 -16.37568 -16.02804 -15.70052 -15.49776 -15.07880 -14.94700 -14.68584 -14.61961 -14.35549 -14.23364 -13.77578 -13.42778 -13.38190 -13.27273 -12.92432 -12.89310 -12.80926 -12.74957 -12.26025 -12.13252 -12.01996 -11.89733 -11.68622 -11.66497 -11.34069 -10.87003 -10.76931 -10.57315 -9.78877 -9.70225 -8.95107 -8.23322 -7.93515 -5.31183 0.57359 0.72348 1.45923 1.46738 1.54607 1.58167 1.81929 2.31723 2.47710 2.84002 3.03978 3.27168 3.56994 3.76114 3.82550 3.92471 3.93091 4.03265 4.12472 4.16657 4.29329 4.36789 4.38227 4.45164 4.50070 4.64999 4.66302 4.75528 4.80997 4.87575 4.89169 4.93682 4.96684 5.17708 5.26568 5.36699 5.40041 5.43704 5.54290 5.61917 5.63478 5.77901 5.98667 6.14160 6.23272 6.52375 6.61036 6.97530 7.27223 7.65028 8.43368 9.20516 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022191 B = 0.002500 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.460891 B =11198.285532 C =12037.432087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.619 5.619 3 C 0.112 3.888 4 C 0.486 3.514 5 O -0.578 6.578 6 N -0.682 5.682 7 C 0.117 3.883 8 H 0.096 0.904 9 C -0.185 4.185 10 H 0.123 0.877 11 C 0.189 3.811 12 N -0.617 5.617 13 C -0.240 4.240 14 H 0.086 0.914 15 C -0.066 4.066 16 N -0.950 5.950 17 Si 0.984 3.016 18 H -0.261 1.261 19 H -0.290 1.290 20 H -0.293 1.293 21 C 0.146 3.854 22 C -0.156 4.156 23 H 0.145 0.855 24 C 0.205 3.795 25 C -0.209 4.209 26 C -0.081 4.081 27 C -0.192 4.192 28 C -0.085 4.085 29 C -0.214 4.214 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.146 0.854 34 H 0.126 0.874 35 H 0.420 0.580 36 H -0.011 1.011 37 H 0.057 0.943 38 H 0.249 0.751 39 H 0.015 0.985 40 H 0.068 0.932 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.854 -8.785 22.775 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.329 5.329 3 C -0.016 4.016 4 C 0.273 3.727 5 O -0.456 6.456 6 N -0.333 5.333 7 C 0.010 3.990 8 H 0.114 0.886 9 C -0.206 4.206 10 H 0.141 0.859 11 C 0.063 3.937 12 N -0.341 5.341 13 C -0.368 4.368 14 H 0.103 0.897 15 C -0.259 4.259 16 N -0.598 5.598 17 Si 0.811 3.189 18 H -0.186 1.186 19 H -0.216 1.216 20 H -0.221 1.221 21 C 0.020 3.980 22 C -0.177 4.177 23 H 0.163 0.837 24 C 0.104 3.896 25 C -0.231 4.231 26 C -0.100 4.100 27 C -0.212 4.212 28 C -0.104 4.104 29 C -0.236 4.236 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.163 0.837 34 H 0.144 0.856 35 H 0.258 0.742 36 H 0.007 0.993 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.033 0.967 40 H 0.086 0.914 41 H 0.151 0.849 42 H 0.159 0.841 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.109 -9.074 21.971 26.239 hybrid contribution 0.951 0.588 -1.057 1.538 sum -10.158 -8.485 20.914 24.751 Atomic orbital electron populations 1.21749 0.78052 1.02903 1.02091 1.46127 1.05651 1.01831 1.79270 1.21497 1.01512 0.87732 0.90812 1.22393 0.76607 0.79868 0.93855 1.90722 1.52183 1.54611 1.48056 1.45221 1.57392 1.24111 1.06612 1.21294 0.97448 0.94813 0.85495 0.88611 1.24382 0.91900 1.05582 0.98782 0.85867 1.20749 0.98611 0.86296 0.88071 1.45502 1.16071 1.20672 1.51853 1.19459 1.10736 0.92134 1.14507 0.89678 1.25821 1.01868 0.97759 1.00486 1.70129 1.30468 1.14127 1.45047 0.84943 0.78039 0.78531 0.77366 1.18553 1.21634 1.22058 1.21296 0.87239 0.99034 0.90398 1.24194 1.02661 0.91626 0.99210 0.83732 1.18034 0.91480 0.86440 0.93663 1.20929 1.00441 0.91221 1.10486 1.21210 0.94476 0.97905 0.96363 1.21206 0.94718 0.98394 1.06838 1.21176 1.00408 0.92171 0.96648 1.20854 0.92548 0.99234 1.10955 0.90787 0.91613 0.91781 0.83677 0.85605 0.74183 0.99341 0.92478 0.94147 0.96677 0.91381 0.84868 0.84146 0.84845 0.84990 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.41 10.19 127.77 1.30 2.71 16 2 N -0.62 -11.91 2.50 -726.58 -1.81 -13.72 16 3 C 0.11 1.69 5.64 85.63 0.48 2.17 16 4 C 0.49 12.08 7.90 87.66 0.69 12.78 16 5 O -0.58 -21.14 16.00 -3.01 -0.05 -21.18 16 6 N -0.68 -15.37 5.56 -442.53 -2.46 -17.84 16 7 C 0.12 3.81 5.97 44.99 0.27 4.08 16 8 H 0.10 3.86 7.40 -2.38 -0.02 3.85 16 9 C -0.19 -6.90 7.06 -9.89 -0.07 -6.97 16 10 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 11 C 0.19 9.63 5.70 86.53 0.49 10.13 16 12 N -0.62 -32.38 3.38 -688.15 -2.33 -34.70 16 13 C -0.24 -13.53 10.35 84.03 0.87 -12.66 16 14 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 15 C -0.07 -3.79 5.40 84.86 0.46 -3.33 16 16 N -0.95 -58.39 10.86 21.65 0.24 -58.15 16 17 Si 0.98 45.75 29.56 68.60 2.03 47.78 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 C 0.15 6.06 7.04 86.53 0.61 6.67 16 22 C -0.16 -5.07 7.06 -9.89 -0.07 -5.14 16 23 H 0.15 3.59 8.14 -2.39 -0.02 3.57 16 24 C 0.21 4.68 6.55 38.21 0.25 4.93 16 25 C -0.21 -4.37 9.21 22.40 0.21 -4.17 16 26 C -0.08 -1.56 10.04 22.25 0.22 -1.34 16 27 C -0.19 -3.81 10.04 22.30 0.22 -3.58 16 28 C -0.09 -1.84 10.04 22.25 0.22 -1.61 16 29 C -0.21 -4.92 9.21 22.40 0.21 -4.72 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.98 8.07 -2.39 -0.02 0.96 16 32 H 0.06 1.02 6.20 -2.39 -0.01 1.01 16 33 H 0.15 1.06 8.07 -2.39 -0.02 1.04 16 34 H 0.13 1.43 6.20 -2.39 -0.01 1.42 16 35 H 0.42 5.87 8.83 -92.71 -0.82 5.05 16 36 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 37 H 0.06 3.27 6.51 -2.39 -0.02 3.25 16 38 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.13 2.31 6.14 -2.91 -0.02 2.29 16 42 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 44 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 45 H 0.12 2.52 6.14 -2.91 -0.02 2.51 16 Total: -1.00 -79.21 369.32 2.17 -77.04 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.18 Total: 20.84 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 6.37 Total: -0.06 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -6.37 Total: -124.42 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.05 Total: -21.18 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -79.21 2.17 -77.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115343058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.274 kcal (2) G-P(sol) polarization free energy of solvation -79.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds