Wall clock time and date at job start Tue Mar 31 2020 10:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46905 * 109.46987 * 2 1 4 4 C 1.46906 * 110.99733 * 199.14299 * 3 2 1 5 5 C 1.53003 * 109.46853 * 66.04856 * 4 3 2 6 6 N 1.46503 * 109.46627 * 180.02562 * 5 4 3 7 7 C 1.34947 * 126.04044 * 125.00219 * 6 5 4 8 8 C 1.35307 * 107.74718 * 179.97438 * 7 6 5 9 9 C 1.39865 * 107.92113 * 359.97438 * 8 7 6 10 10 N 1.30835 * 108.20233 * 359.74192 * 9 8 7 11 11 C 1.46899 * 111.00212 * 75.19189 * 3 2 1 12 12 C 1.50695 * 109.47307 * 199.22862 * 11 3 2 13 13 C 1.38302 * 119.93075 * 264.52887 * 12 11 3 14 14 C 1.38093 * 120.07103 * 179.71747 * 13 12 11 15 15 C 1.38882 * 119.92960 * 0.57616 * 14 13 12 16 16 O 1.35750 * 120.07217 * 179.67596 * 15 14 13 17 17 C 1.34833 * 117.00187 * 185.78755 * 16 15 14 18 18 H 1.07995 * 120.00006 * 5.44990 * 17 16 15 19 19 C 1.38653 * 120.00044 * 185.45759 * 17 16 15 20 20 N 1.31561 * 119.99917 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99965 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47618 * 89.99566 * 21 19 17 23 23 H 1.48502 * 109.47131 * 209.99520 * 21 19 17 24 24 H 1.48497 * 109.47187 * 329.99100 * 21 19 17 25 25 C 1.38878 * 119.86205 * 359.70303 * 15 14 13 26 26 C 1.38107 * 119.93156 * 359.97438 * 25 15 14 27 27 H 1.09000 * 109.47253 * 294.94996 * 1 2 3 28 28 H 1.08994 * 109.47535 * 54.95442 * 1 2 3 29 29 H 1.09005 * 109.46734 * 174.95429 * 1 2 3 30 30 H 1.09000 * 109.47343 * 239.99661 * 2 1 3 31 31 H 1.09006 * 109.47467 * 119.99529 * 2 1 3 32 32 H 1.09001 * 109.46716 * 186.04638 * 4 3 2 33 33 H 1.09002 * 109.47397 * 306.04721 * 4 3 2 34 34 H 1.08999 * 109.46770 * 299.99511 * 5 4 3 35 35 H 1.08995 * 109.47411 * 59.99410 * 5 4 3 36 36 H 1.08001 * 126.12274 * 359.94607 * 7 6 5 37 37 H 1.08005 * 126.04077 * 179.97438 * 8 7 6 38 38 H 1.08004 * 125.89749 * 179.97438 * 9 8 7 39 39 H 1.08995 * 109.47139 * 79.22145 * 11 3 2 40 40 H 1.09008 * 109.46522 * 319.22844 * 11 3 2 41 41 H 1.08002 * 119.96172 * 359.97438 * 13 12 11 42 42 H 1.08000 * 120.03938 * 180.27405 * 14 13 12 43 43 H 0.96998 * 120.00086 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.04032 * 179.97438 * 25 15 14 45 45 H 1.07994 * 119.97050 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4166 1.4495 -0.4498 5 6 3.4987 1.0344 -1.9201 6 7 4.8920 1.0981 -2.3684 7 6 5.5905 0.0920 -2.9348 8 6 6.8342 0.5530 -3.2026 9 6 6.8977 1.8867 -2.7861 10 7 5.7322 2.2163 -2.2912 11 6 1.8646 1.9983 1.3259 12 6 1.9184 3.4985 1.1949 13 6 3.1119 4.1668 1.3995 14 6 3.1658 5.5410 1.2745 15 6 2.0172 6.2532 0.9546 16 8 2.0655 7.6048 0.8375 17 6 0.8945 8.2447 0.6440 18 1 -0.0338 7.6937 0.6766 19 6 0.8821 9.6101 0.4032 20 7 2.0129 10.2813 0.3639 21 14 -0.7401 10.4967 0.1359 22 1 -1.2647 10.9734 1.4408 23 1 -0.5273 11.6572 -0.7658 24 1 -1.7182 9.5643 -0.4800 25 6 0.8190 5.5799 0.7554 26 6 0.7731 4.2048 0.8753 27 1 -0.3634 0.4335 0.9317 28 1 -0.3634 0.5901 -0.8413 29 1 -0.3633 -1.0238 -0.0904 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.7874 2.4685 -0.3386 33 1 4.0239 0.7741 0.1529 34 1 3.1279 0.0155 -2.0312 35 1 2.8914 1.7097 -2.5227 36 1 5.2229 -0.9031 -3.1376 37 1 7.6361 -0.0094 -3.6575 38 1 7.7588 2.5340 -2.8633 39 1 2.6701 1.6613 1.9784 40 1 0.9051 1.7048 1.7519 41 1 4.0036 3.6128 1.6534 42 1 4.0990 6.0618 1.4301 43 1 2.0043 11.2366 0.1958 44 1 -0.0760 6.1309 0.5069 45 1 -0.1582 3.6806 0.7201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137120369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:54 Heat of formation + Delta-G solvation = 64.958108 kcal Electronic energy + Delta-G solvation = -25498.219821 eV Core-core repulsion = 21903.721126 eV Total energy + Delta-G solvation = -3594.498695 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.99771 -40.85910 -39.41440 -37.80226 -34.65898 -34.29323 -32.35758 -31.84215 -31.32810 -30.64289 -28.75438 -27.42723 -25.71085 -24.42110 -23.56330 -22.55138 -21.91670 -21.62543 -21.11040 -19.84995 -18.84188 -18.22034 -17.04158 -16.56112 -16.46034 -16.19471 -15.97142 -15.85491 -15.46584 -15.40299 -15.13244 -14.79040 -14.45212 -14.42243 -14.31379 -14.14038 -13.59705 -13.57424 -13.44580 -13.00431 -12.84393 -12.81856 -12.61854 -12.37977 -12.29276 -12.25353 -12.13281 -11.89646 -11.62425 -11.36354 -11.19864 -10.78890 -10.38696 -9.76744 -9.49458 -9.31307 -8.90222 -8.47448 -6.15752 0.60027 0.68086 1.04277 1.33883 1.43634 1.52008 1.62397 1.99476 2.17514 2.73071 3.01246 3.27889 3.50351 3.58181 3.89596 3.98903 4.05868 4.08475 4.14043 4.16570 4.20484 4.32375 4.44114 4.48905 4.57750 4.60633 4.66685 4.73929 4.79189 4.83400 4.92802 4.98895 5.06302 5.08024 5.14066 5.15734 5.18460 5.29872 5.46798 5.57499 5.71572 5.75603 5.79558 6.02147 6.04461 6.14751 6.22794 6.26892 6.83226 6.97055 7.78885 8.76237 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.003121 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.620954 B = 8969.481203 C =10383.238525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 N -0.539 5.539 4 C 0.053 3.947 5 C 0.139 3.861 6 N -0.379 5.379 7 C 0.056 3.944 8 C -0.286 4.286 9 C 0.028 3.972 10 N -0.346 5.346 11 C 0.117 3.883 12 C -0.151 4.151 13 C -0.060 4.060 14 C -0.207 4.207 15 C 0.115 3.885 16 O -0.235 6.235 17 C -0.413 4.413 18 H 0.101 0.899 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.020 2.980 22 H -0.262 1.262 23 H -0.271 1.271 24 H -0.252 1.252 25 C -0.243 4.243 26 C -0.045 4.045 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.213 0.787 37 H 0.170 0.830 38 H 0.195 0.805 39 H 0.047 0.953 40 H 0.098 0.902 41 H 0.131 0.869 42 H 0.105 0.895 43 H 0.272 0.728 44 H 0.118 0.882 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 -27.463 -3.964 27.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 N -0.265 5.265 4 C -0.076 4.076 5 C 0.018 3.982 6 N -0.162 5.162 7 C -0.090 4.090 8 C -0.315 4.315 9 C -0.157 4.157 10 N -0.168 5.168 11 C -0.009 4.009 12 C -0.152 4.152 13 C -0.079 4.079 14 C -0.226 4.226 15 C 0.065 3.935 16 O -0.142 6.142 17 C -0.489 4.489 18 H 0.119 0.881 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.839 3.161 22 H -0.187 1.187 23 H -0.196 1.196 24 H -0.176 1.176 25 C -0.262 4.262 26 C -0.063 4.063 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.229 0.771 37 H 0.188 0.812 38 H 0.212 0.788 39 H 0.065 0.935 40 H 0.116 0.884 41 H 0.149 0.851 42 H 0.124 0.876 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.127 -25.946 -3.731 26.213 hybrid contribution 0.778 0.279 0.058 0.828 sum 0.651 -25.667 -3.674 25.937 Atomic orbital electron populations 1.21773 0.94177 1.02261 1.02108 1.22303 0.96842 0.87315 1.01843 1.61910 1.18487 1.19059 1.27010 1.22147 0.89468 1.01622 0.94349 1.21783 0.76437 1.04774 0.95202 1.48886 1.11616 1.08335 1.47408 1.23270 0.92750 0.95749 0.97263 1.21874 0.99318 0.96070 1.14260 1.24387 0.96124 0.97425 0.97789 1.77458 1.03500 1.10097 1.25786 1.20822 1.02386 0.88741 0.88984 1.19581 0.92804 0.95895 1.06908 1.20770 0.97964 0.91737 0.97383 1.20363 0.96372 0.95033 1.10840 1.19897 0.95240 0.84137 0.94245 1.83951 1.34280 1.15153 1.80788 1.21819 0.84140 0.91955 1.50970 0.88141 1.26631 1.03443 0.96201 0.95915 1.70197 1.28693 1.09096 1.48099 0.84574 0.74900 0.77647 0.79000 1.18664 1.19598 1.17560 1.21265 0.97567 0.96161 1.11197 1.20860 0.98776 0.91625 0.95085 0.93035 0.92706 0.90626 0.89322 0.93779 0.91993 0.94227 0.85105 0.90584 0.77073 0.81247 0.78827 0.93511 0.88411 0.85102 0.87643 0.91858 0.86424 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.95 71.98 0.72 -1.14 16 2 C 0.04 0.59 5.55 86.30 0.48 1.06 16 3 N -0.54 -11.04 4.36 -900.76 -3.93 -14.97 16 4 C 0.05 1.18 4.97 86.30 0.43 1.61 16 5 C 0.14 2.65 6.48 86.38 0.56 3.21 16 6 N -0.38 -8.57 3.68 -348.06 -1.28 -9.85 16 7 C 0.06 0.89 11.45 83.54 0.96 1.85 16 8 C -0.29 -5.03 10.80 21.99 0.24 -4.79 16 9 C 0.03 0.65 12.02 85.24 1.02 1.68 16 10 N -0.35 -10.24 12.42 -57.03 -0.71 -10.95 16 11 C 0.12 2.68 4.94 85.56 0.42 3.11 16 12 C -0.15 -4.86 5.03 -19.84 -0.10 -4.96 16 13 C -0.06 -2.19 8.37 22.25 0.19 -2.00 16 14 C -0.21 -9.53 9.99 22.39 0.22 -9.30 16 15 C 0.12 6.05 6.65 22.58 0.15 6.20 16 16 O -0.23 -14.81 9.76 -22.77 -0.22 -15.03 16 17 C -0.41 -24.89 9.44 67.92 0.64 -24.25 16 18 H 0.10 5.56 5.30 -2.91 -0.02 5.54 16 19 C -0.02 -1.45 5.49 84.83 0.47 -0.99 16 20 N -0.92 -58.43 13.67 21.61 0.30 -58.13 16 21 Si 1.02 44.04 29.55 68.60 2.03 46.07 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 25 C -0.24 -11.03 9.13 22.39 0.20 -10.83 16 26 C -0.05 -1.60 9.71 22.25 0.22 -1.39 16 27 H 0.05 0.71 6.86 -2.39 -0.02 0.69 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.09 0.85 5.89 -2.39 -0.01 0.84 16 31 H 0.04 0.54 8.01 -2.38 -0.02 0.52 16 32 H 0.06 1.88 6.29 -2.39 -0.02 1.87 16 33 H 0.04 0.83 8.12 -2.39 -0.02 0.81 16 34 H 0.13 1.40 6.18 -2.39 -0.01 1.38 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.21 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.19 3.55 8.06 -2.91 -0.02 3.52 16 39 H 0.05 1.00 7.91 -2.39 -0.02 0.98 16 40 H 0.10 1.91 6.50 -2.38 -0.02 1.89 16 41 H 0.13 4.08 7.99 -2.91 -0.02 4.05 16 42 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 43 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.12 5.43 5.72 -2.91 -0.02 5.41 16 45 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -79.79 372.54 3.98 -75.81 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.99 Total: 27.98 kcal Atomic # 6 Polarization: -47.74 SS G_CDS: 6.81 Total: -40.93 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -5.62 Total: -93.90 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.22 Total: -15.03 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -79.79 3.98 -75.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137120369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.767 kcal (2) G-P(sol) polarization free energy of solvation -79.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds