Wall clock time and date at job start Tue Mar 31 2020 10:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46904 * 109.46984 * 2 1 4 4 C 1.46900 * 110.99980 * 199.42614 * 3 2 1 5 5 C 1.53001 * 109.46890 * 66.05241 * 4 3 2 6 6 N 1.46500 * 109.47032 * 179.97438 * 5 4 3 7 7 C 1.36885 * 126.39790 * 89.99540 * 6 5 4 8 8 C 1.34669 * 106.81747 * 180.02562 * 7 6 5 9 9 N 1.34129 * 108.02192 * 359.97438 * 8 7 6 10 10 C 1.30507 * 109.25365 * 359.72747 * 9 8 7 11 11 C 1.46905 * 110.99883 * 75.47604 * 3 2 1 12 12 C 1.50700 * 109.46819 * 199.45059 * 11 3 2 13 13 C 1.38295 * 119.93344 * 264.37514 * 12 11 3 14 14 C 1.38098 * 120.07096 * 179.72658 * 13 12 11 15 15 C 1.38873 * 119.92898 * 0.57183 * 14 13 12 16 16 O 1.35757 * 120.07095 * 179.68062 * 15 14 13 17 17 C 1.34831 * 117.00340 * 185.72501 * 16 15 14 18 18 H 1.07998 * 119.99679 * 354.92685 * 17 16 15 19 19 C 1.38646 * 120.00246 * 174.92589 * 17 16 15 20 20 N 1.31561 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00249 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46977 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47184 * 119.99731 * 21 19 17 24 24 H 1.48495 * 109.47379 * 240.00202 * 21 19 17 25 25 C 1.38886 * 119.86260 * 359.70792 * 15 14 13 26 26 C 1.38094 * 119.92951 * 359.97438 * 25 15 14 27 27 H 1.08991 * 109.47257 * 64.91540 * 1 2 3 28 28 H 1.09004 * 109.47131 * 184.91734 * 1 2 3 29 29 H 1.09000 * 109.46951 * 304.90927 * 1 2 3 30 30 H 1.09005 * 109.47669 * 240.00258 * 2 1 3 31 31 H 1.09004 * 109.47774 * 119.99907 * 2 1 3 32 32 H 1.09003 * 109.46966 * 186.04532 * 4 3 2 33 33 H 1.08994 * 109.47447 * 306.04471 * 4 3 2 34 34 H 1.09003 * 109.46738 * 299.99431 * 5 4 3 35 35 H 1.08994 * 109.47704 * 59.99388 * 5 4 3 36 36 H 1.07997 * 126.59498 * 359.96348 * 7 6 5 37 37 H 1.07996 * 125.99527 * 180.02562 * 8 7 6 38 38 H 1.08000 * 125.64893 * 180.29441 * 10 9 8 39 39 H 1.08993 * 109.47183 * 79.45020 * 11 3 2 40 40 H 1.09005 * 109.46800 * 319.44882 * 11 3 2 41 41 H 1.08010 * 119.96388 * 359.97438 * 13 12 11 42 42 H 1.08000 * 120.03806 * 180.27893 * 14 13 12 43 43 H 0.96996 * 120.00063 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.03140 * 179.97438 * 25 15 14 45 45 H 1.07994 * 119.96668 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4145 1.4503 -0.4561 5 6 3.4896 1.0377 -1.9275 6 7 4.8806 1.1034 -2.3826 7 6 5.8001 0.0905 -2.3331 8 6 6.9442 0.5774 -2.8504 9 7 6.7291 1.8525 -3.2066 10 6 5.4934 2.1725 -2.9350 11 6 1.8708 1.9960 1.3277 12 6 1.9185 3.4967 1.1982 13 6 3.1101 4.1691 1.3993 14 6 3.1583 5.5437 1.2758 15 6 2.0059 6.2520 0.9610 16 8 2.0487 7.6039 0.8452 17 6 0.8748 8.2395 0.6555 18 1 -0.0323 7.6692 0.5201 19 6 0.8321 9.6251 0.6344 20 7 1.9370 10.3199 0.8000 21 14 -0.7941 10.5057 0.3709 22 1 -1.8792 9.5043 0.2123 23 1 -1.0854 11.3688 1.5437 24 1 -0.7107 11.3439 -0.8521 25 6 0.8095 5.5743 0.7653 26 6 0.7693 4.1990 0.8837 27 1 -0.3633 0.4356 -0.9306 28 1 -0.3633 -1.0239 0.0881 29 1 -0.3633 0.5881 0.8428 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7858 2.4691 -0.3451 33 1 4.0245 0.7740 0.1425 34 1 3.1184 0.0189 -2.0386 35 1 2.8796 1.7140 -2.5262 36 1 5.6393 -0.9069 -1.9516 37 1 7.8721 0.0358 -2.9601 38 1 5.0373 3.1341 -3.1187 39 1 2.6815 1.6612 1.9746 40 1 0.9150 1.6987 1.7593 41 1 4.0049 3.6183 1.6493 42 1 4.0901 6.0679 1.4286 43 1 1.9073 11.2893 0.7849 44 1 -0.0884 6.1224 0.5207 45 1 -0.1606 3.6715 0.7313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137122582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:57 Heat of formation + Delta-G solvation = 51.225214 kcal Electronic energy + Delta-G solvation = -25517.454145 eV Core-core repulsion = 21922.359946 eV Total energy + Delta-G solvation = -3595.094198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.92329 -40.85469 -39.42656 -37.81451 -35.20358 -34.31029 -32.34486 -31.84886 -31.29704 -30.31031 -28.89761 -27.43798 -25.71239 -24.39844 -23.54951 -22.54560 -22.22868 -21.75639 -21.22258 -19.83910 -18.84592 -18.38315 -17.06025 -16.56132 -16.42270 -16.25332 -16.16466 -15.52751 -15.50279 -15.36293 -15.10346 -14.92545 -14.71277 -14.54360 -14.36164 -14.24633 -13.99060 -13.58498 -13.46419 -13.02145 -12.96696 -12.79857 -12.65321 -12.34190 -12.28865 -12.23227 -12.10361 -11.88436 -11.58100 -11.15307 -10.92400 -10.79594 -10.57234 -9.75742 -9.43833 -9.29410 -8.89083 -8.46675 -6.14787 0.61028 0.69163 1.14914 1.35184 1.43359 1.53546 1.85008 2.17845 2.24046 2.75864 3.04210 3.30261 3.52961 3.69522 3.84395 3.90025 3.99302 4.06275 4.11501 4.19743 4.22141 4.33870 4.41227 4.47160 4.57006 4.61071 4.65623 4.66287 4.75255 4.80680 4.84449 4.90880 5.05778 5.08953 5.15793 5.16985 5.31165 5.37841 5.47347 5.58928 5.73262 5.79990 5.86265 6.03472 6.05851 6.14758 6.25661 6.30370 6.98335 7.16567 7.80044 8.76946 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.003080 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.572754 B = 9089.583491 C =10481.095968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 N -0.537 5.537 4 C 0.046 3.954 5 C 0.112 3.888 6 N -0.452 5.452 7 C -0.046 4.046 8 C -0.061 4.061 9 N -0.540 5.540 10 C 0.169 3.831 11 C 0.116 3.884 12 C -0.149 4.149 13 C -0.061 4.061 14 C -0.207 4.207 15 C 0.115 3.885 16 O -0.235 6.235 17 C -0.411 4.411 18 H 0.102 0.898 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.018 2.982 22 H -0.250 1.250 23 H -0.269 1.269 24 H -0.269 1.269 25 C -0.242 4.242 26 C -0.044 4.044 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.206 0.794 37 H 0.182 0.818 38 H 0.210 0.790 39 H 0.049 0.951 40 H 0.095 0.905 41 H 0.135 0.865 42 H 0.106 0.894 43 H 0.272 0.728 44 H 0.116 0.884 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 -26.156 -2.359 26.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 N -0.262 5.262 4 C -0.083 4.083 5 C -0.010 4.010 6 N -0.135 5.135 7 C -0.179 4.179 8 C -0.208 4.208 9 N -0.259 5.259 10 C -0.113 4.113 11 C -0.010 4.010 12 C -0.150 4.150 13 C -0.079 4.079 14 C -0.226 4.226 15 C 0.065 3.935 16 O -0.142 6.142 17 C -0.487 4.487 18 H 0.120 0.880 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.838 3.162 22 H -0.173 1.173 23 H -0.194 1.194 24 H -0.194 1.194 25 C -0.261 4.261 26 C -0.063 4.063 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.135 0.865 35 H 0.118 0.882 36 H 0.223 0.777 37 H 0.199 0.801 38 H 0.226 0.774 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.153 0.847 42 H 0.124 0.876 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.665 -25.043 -2.968 25.273 hybrid contribution -0.322 0.366 0.809 0.945 sum -1.987 -24.677 -2.159 24.851 Atomic orbital electron populations 1.21773 0.94406 1.01992 1.02227 1.22279 0.96671 0.87470 1.01794 1.61881 1.18747 1.18934 1.26672 1.22307 0.89748 1.01697 0.94506 1.21988 0.78041 1.05539 0.95430 1.45682 1.11889 1.11008 1.44903 1.23224 0.89892 0.96227 1.08587 1.22727 1.00136 0.92011 1.05955 1.70267 1.15935 1.15865 1.23791 1.25280 0.89721 0.94940 1.01395 1.20825 1.02400 0.88782 0.89031 1.19558 0.92757 0.95779 1.06929 1.20788 0.98084 0.91617 0.97422 1.20381 0.96355 0.95105 1.10746 1.19909 0.95303 0.84174 0.94119 1.83944 1.34025 1.15433 1.80819 1.21852 0.85443 0.90254 1.51145 0.88049 1.26593 1.03355 0.96031 0.96179 1.70197 1.29692 1.07461 1.48716 0.84533 0.75171 0.78106 0.78422 1.17309 1.19410 1.19408 1.21257 0.97514 0.96139 1.11237 1.20849 0.98765 0.91591 0.95076 0.92624 0.90997 0.93044 0.89417 0.93839 0.91699 0.93693 0.86537 0.88154 0.77677 0.80106 0.77355 0.93327 0.88708 0.84741 0.87613 0.91904 0.86576 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.07 71.98 0.72 -0.92 16 2 C 0.04 0.50 5.55 86.30 0.48 0.98 16 3 N -0.54 -8.93 4.36 -900.77 -3.93 -12.86 16 4 C 0.05 0.77 5.11 86.30 0.44 1.22 16 5 C 0.11 1.56 6.12 86.38 0.53 2.09 16 6 N -0.45 -8.31 2.75 -529.07 -1.46 -9.77 16 7 C -0.05 -0.76 11.58 83.09 0.96 0.20 16 8 C -0.06 -1.33 11.87 83.52 0.99 -0.34 16 9 N -0.54 -15.16 11.25 -200.31 -2.25 -17.41 16 10 C 0.17 4.06 12.56 180.26 2.26 6.33 16 11 C 0.12 2.28 4.94 85.56 0.42 2.70 16 12 C -0.15 -4.27 5.03 -19.83 -0.10 -4.37 16 13 C -0.06 -1.96 8.38 22.25 0.19 -1.78 16 14 C -0.21 -8.79 9.99 22.39 0.22 -8.57 16 15 C 0.12 5.72 6.65 22.58 0.15 5.87 16 16 O -0.24 -14.29 9.76 -22.82 -0.22 -14.51 16 17 C -0.41 -24.01 9.49 67.92 0.64 -23.37 16 18 H 0.10 5.43 5.21 -2.91 -0.02 5.42 16 19 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 20 N -0.92 -57.17 13.67 21.61 0.30 -56.87 16 21 Si 1.02 43.01 29.55 68.60 2.03 45.04 16 22 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 C -0.24 -10.33 9.17 22.39 0.21 -10.12 16 26 C -0.04 -1.45 9.71 22.25 0.22 -1.23 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.05 0.66 6.64 -2.39 -0.02 0.64 16 30 H 0.09 0.69 5.88 -2.38 -0.01 0.68 16 31 H 0.04 0.44 8.00 -2.38 -0.02 0.42 16 32 H 0.06 1.47 6.31 -2.39 -0.02 1.45 16 33 H 0.04 0.69 8.12 -2.39 -0.02 0.67 16 34 H 0.12 1.02 6.25 -2.39 -0.01 1.01 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.18 3.06 8.06 -2.91 -0.02 3.03 16 38 H 0.21 4.45 8.06 -2.91 -0.02 4.43 16 39 H 0.05 0.88 7.91 -2.39 -0.02 0.86 16 40 H 0.09 1.63 6.41 -2.38 -0.02 1.61 16 41 H 0.13 3.57 7.99 -2.91 -0.02 3.55 16 42 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 43 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.12 5.09 5.64 -2.91 -0.02 5.07 16 45 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -76.14 371.77 4.26 -71.88 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.99 Total: 26.76 kcal Atomic # 6 Polarization: -41.06 SS G_CDS: 8.81 Total: -32.25 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -7.34 Total: -96.91 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.22 Total: -14.51 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -76.14 4.26 -71.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137122582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.106 kcal (2) G-P(sol) polarization free energy of solvation -76.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds