Wall clock time and date at job start Tue Mar 31 2020 11:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35981 * 117.00058 * 2 1 4 4 C 1.39403 * 119.81644 * 0.31310 * 3 2 1 5 5 C 1.36517 * 120.76856 * 180.29171 * 4 3 2 6 6 C 1.39266 * 120.06677 * 359.68260 * 5 4 3 7 7 N 1.37221 * 133.69550 * 180.02562 * 6 5 4 8 8 H 0.97002 * 125.47234 * 359.95799 * 7 6 5 9 9 N 1.39862 * 109.05701 * 179.97438 * 7 6 5 10 10 C 1.30250 * 110.08728 * 359.97438 * 9 7 6 11 11 C 1.50702 * 126.09920 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47092 * 270.02894 * 11 10 9 13 13 C 1.46853 * 111.00197 * 45.78571 * 12 11 10 14 14 C 1.53038 * 109.52437 * 185.84404 * 13 12 11 15 15 C 1.53129 * 109.27516 * 300.82090 * 14 13 12 16 16 C 1.53119 * 109.15723 * 57.65624 * 15 14 13 17 17 H 1.09001 * 109.50515 * 62.28692 * 16 15 14 18 18 C 1.50702 * 109.49953 * 182.40442 * 16 15 14 19 19 H 1.07998 * 120.00122 * 119.80410 * 18 16 15 20 20 C 1.37881 * 119.99835 * 299.80373 * 18 16 15 21 21 N 1.31516 * 119.99924 * 180.02562 * 20 18 16 22 22 Si 1.86793 * 120.00075 * 359.97438 * 20 18 16 23 23 H 1.48500 * 109.46942 * 90.00374 * 22 20 18 24 24 H 1.48506 * 109.47263 * 210.00001 * 22 20 18 25 25 H 1.48501 * 109.47494 * 330.00020 * 22 20 18 26 26 C 1.46841 * 111.00336 * 169.99835 * 12 11 10 27 27 C 1.40770 * 119.60492 * 0.02562 * 6 5 4 28 28 C 1.37865 * 119.81454 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47476 * 60.00094 * 1 2 3 30 30 H 1.09005 * 109.47607 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47217 * 300.00328 * 1 2 3 32 32 H 1.08001 * 119.61693 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.96779 * 179.70720 * 5 4 3 34 34 H 1.08998 * 109.46689 * 30.02485 * 11 10 9 35 35 H 1.08995 * 109.47265 * 150.02508 * 11 10 9 36 36 H 1.09004 * 109.46031 * 305.85785 * 13 12 11 37 37 H 1.09000 * 109.45879 * 65.82832 * 13 12 11 38 38 H 1.08993 * 109.50123 * 180.88488 * 14 13 12 39 39 H 1.08997 * 109.53458 * 60.77692 * 14 13 12 40 40 H 1.08997 * 109.52163 * 297.75432 * 15 14 13 41 41 H 1.08994 * 109.57290 * 177.58883 * 15 14 13 42 42 H 0.97002 * 120.00090 * 179.97438 * 21 20 18 43 43 H 1.08996 * 109.46274 * 294.17867 * 26 12 11 44 44 H 1.09009 * 109.45958 * 54.14101 * 26 12 11 45 45 H 1.08002 * 120.26359 * 0.02836 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2834 2.3783 0.0066 5 6 1.8828 3.6048 0.0008 6 6 3.2721 3.7024 -0.0053 7 7 4.1481 4.7586 -0.0114 8 1 3.8995 5.6962 -0.0130 9 7 5.4572 4.2660 -0.0151 10 6 5.4451 2.9636 -0.0112 11 6 6.6544 2.0644 -0.0139 12 7 7.0417 1.7687 -1.3997 13 6 7.0420 2.9882 -2.2178 14 6 7.3062 2.6230 -3.6802 15 6 8.6590 1.9136 -3.7876 16 6 8.6489 0.6738 -2.8891 17 1 7.8821 -0.0197 -3.2343 18 6 9.9969 0.0022 -2.9433 19 1 10.5797 -0.1126 -2.0413 20 6 10.4863 -0.4656 -4.1445 21 7 11.6624 -1.0521 -4.1917 22 14 9.4780 -0.2676 -5.7044 23 1 9.8183 1.0242 -6.3530 24 1 9.7819 -1.3840 -6.6353 25 1 8.0324 -0.2855 -5.3652 26 6 8.3457 1.0955 -1.4496 27 6 4.0516 2.5302 -0.0059 28 6 3.4233 1.2793 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 0.2055 2.3111 0.0121 33 1 1.2792 4.5003 0.0012 34 1 7.4791 2.5632 0.4952 35 1 6.4172 1.1348 0.5034 36 1 6.0731 3.4808 -2.1358 37 1 7.8228 3.6620 -1.8649 38 1 7.3220 3.5299 -4.2846 39 1 6.5184 1.9605 -4.0385 40 1 9.4514 2.5896 -3.4666 41 1 8.8327 1.6131 -4.8208 42 1 12.0066 -1.3815 -5.0367 43 1 9.1204 1.7781 -1.1002 44 1 8.3237 0.2133 -0.8096 45 1 4.0128 0.3743 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140068687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:06 Heat of formation + Delta-G solvation = 58.900759 kcal Electronic energy + Delta-G solvation = -26258.533449 eV Core-core repulsion = 22663.772087 eV Total energy + Delta-G solvation = -3594.761362 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48770 -39.51111 -38.36283 -36.10458 -34.32438 -32.55859 -31.71737 -30.40679 -30.02838 -29.27571 -27.23625 -26.53217 -24.87289 -23.32862 -22.56913 -22.00402 -21.39219 -19.62290 -18.82268 -18.25146 -17.74449 -16.68356 -16.43987 -15.97228 -15.81886 -15.73692 -14.81712 -14.46716 -14.38930 -13.97898 -13.73844 -13.61082 -13.43141 -13.14176 -13.06272 -12.66321 -12.38360 -12.32297 -12.17403 -11.99087 -11.69562 -11.15217 -11.08111 -11.00043 -10.92017 -10.76437 -10.45648 -10.05157 -10.02303 -9.86515 -9.61801 -9.06925 -8.88414 -8.82062 -8.46310 -7.84806 -7.65646 -6.02122 -4.00917 0.71360 1.36891 2.30456 2.55290 3.14487 3.33432 3.44481 3.48614 3.57681 4.31053 4.39591 4.47687 4.47756 4.58780 4.73848 4.87018 4.90686 5.05563 5.14997 5.22757 5.29899 5.44532 5.50005 5.60229 5.67385 5.75761 5.81411 5.90392 5.97972 6.08696 6.10676 6.21587 6.30002 6.34006 6.38684 6.41160 6.55023 6.66971 6.85529 6.90155 7.15121 7.25003 7.26288 7.43400 7.50657 7.59401 7.70403 7.90767 8.57031 9.01310 9.61037 11.11104 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016771 B = 0.003392 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.164942 B = 8251.599455 C = 9046.291665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.081 3.919 4 C -0.147 4.147 5 C -0.109 4.109 6 C 0.097 3.903 7 N -0.513 5.513 8 H 0.438 0.562 9 N -0.241 5.241 10 C 0.116 3.884 11 C 0.129 3.871 12 N -0.533 5.533 13 C 0.063 3.937 14 C -0.119 4.119 15 C -0.122 4.122 16 C 0.021 3.979 17 H 0.037 0.963 18 C -0.512 4.512 19 H 0.073 0.927 20 C 0.070 3.930 21 N -0.903 5.903 22 Si 0.887 3.113 23 H -0.281 1.281 24 H -0.299 1.299 25 H -0.263 1.263 26 C 0.077 3.923 27 C -0.123 4.123 28 C -0.065 4.065 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.263 0.737 43 H 0.030 0.970 44 H 0.071 0.929 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.577 9.208 9.841 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.035 3.965 4 C -0.168 4.168 5 C -0.131 4.131 6 C -0.018 4.018 7 N -0.229 5.229 8 H 0.282 0.718 9 N -0.056 5.056 10 C -0.062 4.062 11 C 0.000 4.000 12 N -0.259 5.259 13 C -0.065 4.065 14 C -0.157 4.157 15 C -0.160 4.160 16 C 0.002 3.998 17 H 0.055 0.945 18 C -0.551 4.551 19 H 0.091 0.909 20 C -0.131 4.131 21 N -0.541 5.541 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.227 1.227 25 H -0.187 1.187 26 C -0.049 4.049 27 C -0.131 4.131 28 C -0.086 4.086 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.974 9.666 9.544 26.689 hybrid contribution -0.799 0.807 -0.685 1.326 sum -23.773 10.473 8.859 27.447 Atomic orbital electron populations 1.23013 0.78815 1.03855 1.00959 1.86110 1.20886 1.26385 1.89596 1.18559 0.91812 0.84186 1.01930 1.20800 0.99989 0.91592 1.04423 1.19505 0.90184 0.97976 1.05434 1.18754 0.92170 0.88483 1.02361 1.45816 1.01465 1.07422 1.68152 0.71781 1.76606 0.98909 1.11589 1.18533 1.23427 0.93862 0.90674 0.98241 1.20573 0.90764 0.96367 0.92301 1.62194 1.32213 1.24373 1.07077 1.22039 0.99826 0.90654 0.93948 1.21649 0.99487 0.99642 0.94873 1.22027 0.94740 0.99078 1.00112 1.19157 0.97617 0.92908 0.90145 0.94510 1.20999 1.01163 1.36987 0.95937 0.90876 1.24973 0.94677 0.94528 0.98902 1.69901 1.18012 1.39826 1.26401 0.86840 0.81671 0.76485 0.83260 1.20793 1.22669 1.18740 1.22134 0.85595 0.97000 1.00207 1.19396 0.92059 0.92637 1.09047 1.19767 0.91123 0.96935 1.00819 0.92875 0.88346 0.92947 0.84920 0.85516 0.92871 0.88403 0.91928 0.95143 0.93019 0.91929 0.92549 0.93595 0.92735 0.95209 0.91068 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.80 101.05 0.99 1.18 16 2 O -0.32 -3.44 10.49 -19.68 -0.21 -3.65 16 3 C 0.08 0.93 6.67 -39.28 -0.26 0.66 16 4 C -0.15 -1.36 8.96 -39.77 -0.36 -1.72 16 5 C -0.11 -1.02 10.01 -39.82 -0.40 -1.42 16 6 C 0.10 1.15 7.33 -84.11 -0.62 0.53 16 7 N -0.51 -5.86 7.38 32.38 0.24 -5.63 16 8 H 0.44 3.52 8.96 -182.78 -1.64 1.88 16 9 N -0.24 -3.43 11.62 34.84 0.40 -3.02 16 10 C 0.12 1.68 5.21 -80.18 -0.42 1.26 16 11 C 0.13 1.90 5.87 -4.98 -0.03 1.87 16 12 N -0.53 -9.39 4.80 -236.11 -1.13 -10.52 16 13 C 0.06 1.12 4.95 -3.83 -0.02 1.10 16 14 C -0.12 -2.23 6.09 -26.64 -0.16 -2.40 16 15 C -0.12 -2.71 4.74 -26.60 -0.13 -2.83 16 16 C 0.02 0.50 1.85 -91.69 -0.17 0.33 16 17 H 0.04 0.92 7.19 -51.93 -0.37 0.54 16 18 C -0.51 -14.35 9.14 -34.44 -0.31 -14.66 16 19 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 20 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 21 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 22 Si 0.89 22.40 24.36 -169.99 -4.14 18.26 16 23 H -0.28 -6.94 6.89 56.52 0.39 -6.55 16 24 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 25 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 26 C 0.08 1.55 4.65 -3.84 -0.02 1.53 16 27 C -0.12 -1.68 6.33 -105.21 -0.67 -2.34 16 28 C -0.07 -0.84 10.04 -39.06 -0.39 -1.23 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.26 7.63 -51.93 -0.40 -0.13 16 32 H 0.13 0.84 6.25 -52.49 -0.33 0.51 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.07 5.97 -51.93 -0.31 0.76 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.05 1.08 3.37 -51.93 -0.17 0.90 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.38 8.12 -51.92 -0.42 0.96 16 45 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -32.84 352.88 -9.66 -42.50 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.86 Total: -0.02 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -3.05 Total: -16.19 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.28 Total: -46.21 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.21 Total: -3.65 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.14 Total: 18.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.84 -9.66 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140068687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.403 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds