Wall clock time and date at job start Tue Mar 31 2020 11:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35981 * 117.00058 * 2 1 4 4 C 1.39403 * 119.81644 * 0.31310 * 3 2 1 5 5 C 1.36517 * 120.76856 * 180.29171 * 4 3 2 6 6 C 1.39266 * 120.06677 * 359.68260 * 5 4 3 7 7 N 1.37221 * 133.69550 * 180.02562 * 6 5 4 8 8 H 0.97002 * 125.47234 * 359.95799 * 7 6 5 9 9 N 1.39862 * 109.05701 * 179.97438 * 7 6 5 10 10 C 1.30250 * 110.08728 * 359.97438 * 9 7 6 11 11 C 1.50702 * 126.09920 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47092 * 270.02894 * 11 10 9 13 13 C 1.46853 * 111.00197 * 45.78571 * 12 11 10 14 14 C 1.53038 * 109.52437 * 185.84404 * 13 12 11 15 15 C 1.53129 * 109.27516 * 300.82090 * 14 13 12 16 16 C 1.53119 * 109.15723 * 57.65624 * 15 14 13 17 17 H 1.09001 * 109.50515 * 62.28692 * 16 15 14 18 18 C 1.50702 * 109.49953 * 182.40442 * 16 15 14 19 19 H 1.07998 * 120.00122 * 119.80410 * 18 16 15 20 20 C 1.37881 * 119.99835 * 299.80373 * 18 16 15 21 21 N 1.31516 * 119.99924 * 180.02562 * 20 18 16 22 22 Si 1.86793 * 120.00075 * 359.97438 * 20 18 16 23 23 H 1.48500 * 109.46942 * 90.00374 * 22 20 18 24 24 H 1.48506 * 109.47263 * 210.00001 * 22 20 18 25 25 H 1.48501 * 109.47494 * 330.00020 * 22 20 18 26 26 C 1.46841 * 111.00336 * 169.99835 * 12 11 10 27 27 C 1.40770 * 119.60492 * 0.02562 * 6 5 4 28 28 C 1.37865 * 119.81454 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47476 * 60.00094 * 1 2 3 30 30 H 1.09005 * 109.47607 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47217 * 300.00328 * 1 2 3 32 32 H 1.08001 * 119.61693 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.96779 * 179.70720 * 5 4 3 34 34 H 1.08998 * 109.46689 * 30.02485 * 11 10 9 35 35 H 1.08995 * 109.47265 * 150.02508 * 11 10 9 36 36 H 1.09004 * 109.46031 * 305.85785 * 13 12 11 37 37 H 1.09000 * 109.45879 * 65.82832 * 13 12 11 38 38 H 1.08993 * 109.50123 * 180.88488 * 14 13 12 39 39 H 1.08997 * 109.53458 * 60.77692 * 14 13 12 40 40 H 1.08997 * 109.52163 * 297.75432 * 15 14 13 41 41 H 1.08994 * 109.57290 * 177.58883 * 15 14 13 42 42 H 0.97002 * 120.00090 * 179.97438 * 21 20 18 43 43 H 1.08996 * 109.46274 * 294.17867 * 26 12 11 44 44 H 1.09009 * 109.45958 * 54.14101 * 26 12 11 45 45 H 1.08002 * 120.26359 * 0.02836 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2834 2.3783 0.0066 5 6 1.8828 3.6048 0.0008 6 6 3.2721 3.7024 -0.0053 7 7 4.1481 4.7586 -0.0114 8 1 3.8995 5.6962 -0.0130 9 7 5.4572 4.2660 -0.0151 10 6 5.4451 2.9636 -0.0112 11 6 6.6544 2.0644 -0.0139 12 7 7.0417 1.7687 -1.3997 13 6 7.0420 2.9882 -2.2178 14 6 7.3062 2.6230 -3.6802 15 6 8.6590 1.9136 -3.7876 16 6 8.6489 0.6738 -2.8891 17 1 7.8821 -0.0197 -3.2343 18 6 9.9969 0.0022 -2.9433 19 1 10.5797 -0.1126 -2.0413 20 6 10.4863 -0.4656 -4.1445 21 7 11.6624 -1.0521 -4.1917 22 14 9.4780 -0.2676 -5.7044 23 1 9.8183 1.0242 -6.3530 24 1 9.7819 -1.3840 -6.6353 25 1 8.0324 -0.2855 -5.3652 26 6 8.3457 1.0955 -1.4496 27 6 4.0516 2.5302 -0.0059 28 6 3.4233 1.2793 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 0.2055 2.3111 0.0121 33 1 1.2792 4.5003 0.0012 34 1 7.4791 2.5632 0.4952 35 1 6.4172 1.1348 0.5034 36 1 6.0731 3.4808 -2.1358 37 1 7.8228 3.6620 -1.8649 38 1 7.3220 3.5299 -4.2846 39 1 6.5184 1.9605 -4.0385 40 1 9.4514 2.5896 -3.4666 41 1 8.8327 1.6131 -4.8208 42 1 12.0066 -1.3815 -5.0367 43 1 9.1204 1.7781 -1.1002 44 1 8.3237 0.2133 -0.8096 45 1 4.0128 0.3743 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140068687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:05 Heat of formation + Delta-G solvation = 35.756912 kcal Electronic energy + Delta-G solvation = -26259.537042 eV Core-core repulsion = 22663.772087 eV Total energy + Delta-G solvation = -3595.764954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.38757 -40.34611 -39.82373 -36.94101 -35.88800 -34.27608 -32.99902 -32.02913 -31.09320 -30.09970 -28.09396 -27.55369 -26.83605 -24.21338 -24.01037 -23.07656 -22.82789 -20.73926 -20.47661 -19.11414 -18.78382 -18.57110 -17.36657 -17.19997 -16.66359 -16.57574 -16.28538 -15.94434 -15.49389 -15.31911 -15.17771 -14.80717 -14.73157 -14.47704 -14.30695 -13.86854 -13.77385 -13.59019 -13.13513 -13.02331 -12.89035 -12.86451 -12.69925 -12.31174 -11.95008 -11.89000 -11.76990 -11.71957 -11.62067 -11.42176 -11.00671 -10.90354 -10.83976 -10.59626 -9.68482 -9.23005 -8.53487 -8.27941 -6.30745 -0.13688 0.53310 1.31357 1.31962 1.37927 1.49086 1.71677 2.34915 2.47135 2.73215 3.07944 3.09813 3.39949 3.59366 3.69686 3.99416 4.02140 4.08233 4.19788 4.26206 4.38805 4.40811 4.47932 4.50459 4.50690 4.53377 4.65690 4.74454 4.77091 4.79811 4.81777 4.94857 5.00912 5.02362 5.11995 5.17066 5.22228 5.31774 5.39365 5.44666 5.58406 5.64225 5.73515 6.11884 6.16022 6.35730 6.37703 6.55367 6.60533 6.76326 7.34774 8.88799 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016771 B = 0.003392 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.164942 B = 8251.599455 C = 9046.291665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.080 3.920 4 C -0.141 4.141 5 C -0.097 4.097 6 C 0.087 3.913 7 N -0.499 5.499 8 H 0.452 0.548 9 N -0.259 5.259 10 C 0.099 3.901 11 C 0.132 3.868 12 N -0.535 5.535 13 C 0.071 3.929 14 C -0.113 4.113 15 C -0.121 4.121 16 C 0.021 3.979 17 H 0.027 0.973 18 C -0.515 4.515 19 H 0.037 0.963 20 C 0.015 3.985 21 N -0.950 5.950 22 Si 0.948 3.052 23 H -0.269 1.269 24 H -0.299 1.299 25 H -0.249 1.249 26 C 0.088 3.912 27 C -0.144 4.144 28 C -0.096 4.096 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.054 0.946 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.027 0.973 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.036 0.964 42 H 0.265 0.735 43 H 0.022 0.978 44 H 0.071 0.929 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.550 11.095 9.590 31.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.034 3.966 4 C -0.162 4.162 5 C -0.119 4.119 6 C -0.028 4.028 7 N -0.218 5.218 8 H 0.299 0.701 9 N -0.075 5.075 10 C -0.078 4.078 11 C 0.003 3.997 12 N -0.261 5.261 13 C -0.057 4.057 14 C -0.150 4.150 15 C -0.158 4.158 16 C 0.002 3.998 17 H 0.045 0.955 18 C -0.554 4.554 19 H 0.056 0.944 20 C -0.182 4.182 21 N -0.590 5.590 22 Si 0.775 3.225 23 H -0.195 1.195 24 H -0.227 1.227 25 H -0.173 1.173 26 C -0.039 4.039 27 C -0.152 4.152 28 C -0.117 4.117 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.185 0.815 33 H 0.182 0.818 34 H 0.072 0.928 35 H 0.127 0.873 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.090 0.910 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -26.977 11.575 9.312 30.797 hybrid contribution 0.336 0.195 -0.482 0.619 sum -26.641 11.771 8.830 30.434 Atomic orbital electron populations 1.23338 0.76497 1.05409 1.02393 1.86087 1.23384 1.26512 1.89428 1.18743 0.91572 0.85278 1.00983 1.21183 1.01604 0.90574 1.02852 1.19954 0.89251 0.99473 1.03221 1.19042 0.93157 0.87792 1.02770 1.45783 1.00559 1.08208 1.67237 0.70051 1.76502 1.00609 1.11571 1.18821 1.23243 0.94052 0.90810 0.99705 1.20544 0.91325 0.97361 0.90473 1.62100 1.30136 1.24742 1.09134 1.21972 1.00191 0.90429 0.93138 1.21610 0.96988 1.00285 0.96156 1.21918 0.96808 0.98337 0.98749 1.19063 0.94576 0.93265 0.92900 0.95480 1.21311 1.02678 1.36777 0.94620 0.94444 1.25794 0.95679 0.94364 1.02402 1.70041 1.20006 1.41588 1.27401 0.85847 0.80708 0.76781 0.79136 1.19499 1.22675 1.17310 1.21845 0.86919 0.97257 0.97887 1.19504 0.91903 0.93618 1.10211 1.19780 0.92174 0.96493 1.03274 0.91575 0.86999 0.91197 0.81467 0.81823 0.92759 0.87324 0.90900 0.95455 0.90500 0.92049 0.93195 0.94619 0.92600 0.95964 0.91019 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.80 113.37 1.11 1.29 16 2 O -0.34 -6.86 10.49 -93.34 -0.98 -7.84 16 3 C 0.08 1.69 6.67 22.46 0.15 1.84 16 4 C -0.14 -2.09 8.96 22.15 0.20 -1.89 16 5 C -0.10 -1.44 10.01 22.11 0.22 -1.22 16 6 C 0.09 1.86 7.33 39.17 0.29 2.15 16 7 N -0.50 -10.29 7.38 -51.47 -0.38 -10.67 16 8 H 0.45 6.03 8.96 -213.47 -1.91 4.12 16 9 N -0.26 -7.01 11.62 -43.69 -0.51 -7.52 16 10 C 0.10 2.80 5.21 44.79 0.23 3.03 16 11 C 0.13 3.87 5.87 85.56 0.50 4.37 16 12 N -0.54 -18.70 4.80 -900.93 -4.32 -23.02 16 13 C 0.07 2.39 4.95 86.33 0.43 2.82 16 14 C -0.11 -4.02 6.09 30.65 0.19 -3.83 16 15 C -0.12 -5.25 4.74 30.68 0.15 -5.10 16 16 C 0.02 1.01 1.85 -11.49 -0.02 0.99 16 17 H 0.03 1.35 7.19 -2.39 -0.02 1.33 16 18 C -0.52 -29.82 9.14 25.60 0.23 -29.58 16 19 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 20 C 0.01 0.86 5.45 84.66 0.46 1.32 16 21 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 22 Si 0.95 46.51 24.36 68.60 1.67 48.19 16 23 H -0.27 -12.59 6.89 99.48 0.69 -11.91 16 24 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 25 H -0.25 -11.57 6.53 99.48 0.65 -10.92 16 26 C 0.09 3.60 4.65 86.33 0.40 4.00 16 27 C -0.14 -3.79 6.33 -20.24 -0.13 -3.92 16 28 C -0.10 -2.44 10.04 22.61 0.23 -2.22 16 29 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 30 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.07 0.45 7.63 -2.39 -0.02 0.43 16 32 H 0.17 1.26 6.25 -2.91 -0.02 1.24 16 33 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.05 1.57 8.08 -2.39 -0.02 1.55 16 35 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.07 2.37 5.97 -2.39 -0.01 2.35 16 37 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.04 1.62 3.37 -2.39 -0.01 1.61 16 42 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 2.87 8.12 -2.38 -0.02 2.85 16 45 H 0.13 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -72.92 352.88 -0.56 -73.48 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -0.98 Total: 13.37 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 4.64 Total: -25.95 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -4.91 Total: -101.25 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.98 Total: -7.84 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.67 Total: 48.19 kcal Total: -72.92 -0.56 -73.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140068687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.241 kcal (2) G-P(sol) polarization free energy of solvation -72.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds