Wall clock time and date at job start Tue Mar 31 2020 10:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47107 * 2 1 4 4 C 1.46903 * 110.99742 * 66.04666 * 3 2 1 5 5 C 1.52995 * 109.47427 * 202.71497 * 4 3 2 6 6 C 1.39721 * 111.00233 * 190.00424 * 3 2 1 7 7 C 1.35893 * 125.58548 * 298.41395 * 6 3 2 8 8 C 1.40103 * 107.99921 * 179.97438 * 7 6 3 9 9 C 1.38187 * 107.22390 * 0.02562 * 8 7 6 10 10 C 1.41351 * 131.74154 * 179.97438 * 9 8 7 11 11 C 1.35498 * 119.58634 * 179.73056 * 10 9 8 12 12 C 1.46616 * 119.05226 * 0.54145 * 11 10 9 13 13 C 1.47286 * 120.18101 * 179.73436 * 12 11 10 14 14 O 1.21664 * 120.00634 * 160.29653 * 13 12 11 15 15 N 1.34787 * 119.99704 * 340.29626 * 13 12 11 16 16 C 1.46497 * 119.99693 * 13.26257 * 15 13 12 17 17 C 1.36962 * 119.99757 * 193.26176 * 15 13 12 18 18 H 1.08000 * 120.00220 * 8.56692 * 17 15 13 19 19 C 1.38920 * 119.99538 * 188.56312 * 17 15 13 20 20 N 1.31447 * 120.00256 * 36.00969 * 19 17 15 21 21 Si 1.86799 * 120.00053 * 216.00047 * 19 17 15 22 22 H 1.48495 * 109.47130 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46972 * 120.00409 * 21 19 17 24 24 H 1.48497 * 109.47479 * 240.00066 * 21 19 17 25 25 C 1.36371 * 119.64425 * 359.45687 * 12 11 10 26 26 N 1.36756 * 120.59898 * 0.27326 * 25 12 11 27 27 H 1.08993 * 109.47916 * 59.99724 * 1 2 3 28 28 H 1.09002 * 109.47032 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46923 * 299.99136 * 1 2 3 30 30 H 1.09006 * 109.46923 * 240.00864 * 2 1 3 31 31 H 1.08994 * 109.47399 * 120.00284 * 2 1 3 32 32 H 1.09003 * 109.47304 * 322.72553 * 4 3 2 33 33 H 1.09009 * 109.46814 * 82.71833 * 4 3 2 34 34 H 1.09005 * 109.47001 * 62.70414 * 5 4 3 35 35 H 1.09004 * 109.47348 * 182.70061 * 5 4 3 36 36 H 1.09000 * 109.47461 * 302.70947 * 5 4 3 37 37 H 1.08005 * 125.99826 * 0.02562 * 7 6 3 38 38 H 1.07997 * 126.38771 * 180.02562 * 8 7 6 39 39 H 1.08001 * 120.20695 * 0.02711 * 10 9 8 40 40 H 1.07997 * 120.47694 * 180.24916 * 11 10 9 41 41 H 1.09002 * 109.46931 * 66.94619 * 16 15 13 42 42 H 1.09003 * 109.46956 * 186.94150 * 16 15 13 43 43 H 1.08992 * 109.47449 * 306.94343 * 16 15 13 44 44 H 0.97001 * 120.00557 * 180.02562 * 20 19 17 45 45 H 1.08002 * 119.70307 * 180.25530 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0669 1.2534 5 6 1.6654 3.5799 1.0267 6 6 3.3977 1.4289 -0.2266 7 6 4.3481 0.8728 0.5696 8 6 5.6000 1.1368 -0.0014 9 6 5.3781 1.8633 -1.1558 10 6 6.2662 2.3946 -2.1186 11 6 5.7721 3.0763 -3.1803 12 6 4.3219 3.2569 -3.2981 13 6 3.7583 3.9987 -4.4389 14 8 2.5887 3.8538 -4.7409 15 7 4.5385 4.8382 -5.1484 16 6 5.9936 4.8019 -4.9828 17 6 3.9707 5.7252 -6.0240 18 1 2.8982 5.8502 -6.0468 19 6 4.7745 6.4642 -6.8830 20 7 5.8565 5.9241 -7.3982 21 14 4.3176 8.2253 -7.3060 22 1 3.0637 8.5943 -6.6012 23 1 5.4106 9.1361 -6.8806 24 1 4.1155 8.3458 -8.7723 25 6 3.4971 2.7294 -2.3488 26 7 4.0110 2.0390 -1.2860 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 0.6808 1.7450 1.5785 33 1 2.4037 1.8166 2.0199 34 1 0.8988 3.8353 0.2951 35 1 1.4532 4.0877 1.9676 36 1 2.6408 3.8948 0.6557 37 1 4.1697 0.3230 1.4820 38 1 6.5594 0.8299 0.3880 39 1 7.3316 2.2540 -2.0113 40 1 6.4373 3.4848 -3.9266 41 1 6.3789 3.8555 -5.3620 42 1 6.4430 5.6256 -5.5375 43 1 6.2415 4.8977 -3.9257 44 1 6.4179 6.4401 -7.9976 45 1 2.4284 2.8583 -2.4368 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150412065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:31 Heat of formation + Delta-G solvation = 78.558677 kcal Electronic energy + Delta-G solvation = -26591.367561 eV Core-core repulsion = 22997.458630 eV Total energy + Delta-G solvation = -3593.908931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.08821 -40.66113 -38.98593 -36.96986 -36.54118 -34.21065 -33.62040 -32.73422 -31.21686 -30.26588 -28.92881 -27.26992 -26.77005 -24.56224 -24.20304 -23.29983 -22.47582 -21.53202 -20.59131 -19.21411 -18.70711 -17.98139 -17.17857 -17.03403 -16.56992 -16.45101 -16.07541 -15.87376 -15.64442 -15.51043 -15.24113 -14.99068 -14.82500 -14.31060 -13.99151 -13.77066 -13.57579 -13.54065 -13.34721 -13.21162 -13.03013 -12.77356 -12.66563 -12.54229 -12.43288 -12.23095 -12.15506 -11.88190 -11.67981 -11.49962 -11.32159 -10.88705 -10.57242 -9.87486 -9.61316 -9.42127 -8.60184 -8.22314 -5.89897 -0.19342 0.26633 1.31660 1.41374 1.52018 1.58949 1.70546 2.10280 2.23799 2.61178 2.77853 2.95999 3.07873 3.65258 3.82148 3.92451 3.98146 4.03228 4.15149 4.18041 4.23563 4.38876 4.45872 4.50897 4.55752 4.60693 4.71537 4.73834 4.75242 4.80352 4.90379 4.98234 4.99628 5.04820 5.18996 5.22570 5.24099 5.26871 5.36029 5.40318 5.43110 5.64200 5.93931 5.99063 6.03190 6.20634 6.36572 6.56346 7.03611 7.30910 7.91415 8.44826 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.003541 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.109648 B = 7904.477482 C = 8675.430969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 N -0.510 5.510 4 C 0.062 3.938 5 C -0.144 4.144 6 C 0.141 3.859 7 C -0.167 4.167 8 C -0.185 4.185 9 C 0.019 3.981 10 C -0.083 4.083 11 C -0.161 4.161 12 C -0.144 4.144 13 C 0.461 3.539 14 O -0.644 6.644 15 N -0.432 5.432 16 C 0.068 3.932 17 C -0.363 4.363 18 H 0.075 0.925 19 C 0.016 3.984 20 N -0.855 5.855 21 Si 0.980 3.020 22 H -0.276 1.276 23 H -0.256 1.256 24 H -0.272 1.272 25 C 0.101 3.899 26 N -0.347 5.347 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.024 0.976 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.184 0.816 40 H 0.186 0.814 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.284 0.716 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.801 -8.752 18.539 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.060 4.060 3 N -0.233 5.233 4 C -0.064 4.064 5 C -0.202 4.202 6 C -0.062 4.062 7 C -0.191 4.191 8 C -0.209 4.209 9 C -0.085 4.085 10 C -0.101 4.101 11 C -0.180 4.180 12 C -0.150 4.150 13 C 0.253 3.747 14 O -0.535 6.535 15 N -0.147 5.147 16 C -0.074 4.074 17 C -0.490 4.490 18 H 0.093 0.907 19 C -0.190 4.190 20 N -0.491 5.491 21 Si 0.802 3.198 22 H -0.200 1.200 23 H -0.181 1.181 24 H -0.198 1.198 25 C -0.022 4.022 26 N -0.013 5.013 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.043 0.957 37 H 0.185 0.815 38 H 0.192 0.808 39 H 0.201 0.799 40 H 0.202 0.798 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.004 -8.410 17.704 19.625 hybrid contribution -0.243 0.462 -0.437 0.681 sum 0.761 -7.947 17.267 19.023 Atomic orbital electron populations 1.21845 0.93306 1.02833 1.02335 1.22114 0.96706 0.85866 1.01300 1.58338 1.08766 1.18438 1.37782 1.22278 1.02251 0.93849 0.88015 1.21729 1.00348 0.95972 1.02125 1.18635 0.89677 1.06483 0.91362 1.21261 0.91773 1.04678 1.01386 1.21326 0.99466 1.05062 0.95034 1.19475 0.81268 1.07003 1.00790 1.20957 1.00679 0.96602 0.91884 1.23880 0.92739 1.00171 1.01200 1.20355 0.95102 1.03397 0.96136 1.17987 0.86599 0.83177 0.86955 1.90563 1.19917 1.69360 1.73697 1.43733 1.06893 1.29902 1.34159 1.22696 0.80233 1.03533 1.00914 1.19651 0.94008 1.16521 1.18801 0.90705 1.25965 0.95931 1.03254 0.93863 1.70211 1.16711 1.36841 1.25291 0.85136 0.79023 0.77608 0.78034 1.20036 1.18070 1.19781 1.21240 0.98924 0.94872 0.87193 1.41790 1.08145 1.35427 1.15960 0.93738 0.90136 0.91064 0.92624 0.92095 0.87958 0.92640 0.93526 0.89849 0.95702 0.81461 0.80755 0.79914 0.79763 0.92134 0.88861 0.90073 0.90575 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.89 71.98 0.71 -1.81 16 2 C 0.07 1.38 5.39 86.30 0.47 1.84 16 3 N -0.51 -13.19 4.51 -700.24 -3.16 -16.35 16 4 C 0.06 1.26 5.54 86.30 0.48 1.74 16 5 C -0.14 -3.41 10.08 71.98 0.73 -2.69 16 6 C 0.14 4.09 5.13 130.70 0.67 4.76 16 7 C -0.17 -3.94 9.66 22.18 0.21 -3.73 16 8 C -0.18 -4.43 10.97 22.71 0.25 -4.18 16 9 C 0.02 0.59 6.72 38.85 0.26 0.85 16 10 C -0.08 -2.34 10.09 22.40 0.23 -2.12 16 11 C -0.16 -5.59 8.07 23.82 0.19 -5.40 16 12 C -0.14 -6.34 5.90 -19.15 -0.11 -6.45 16 13 C 0.46 25.11 7.45 86.62 0.65 25.76 16 14 O -0.64 -40.27 16.15 -4.23 -0.07 -40.34 16 15 N -0.43 -23.21 3.02 -684.85 -2.07 -25.28 16 16 C 0.07 2.94 7.66 127.77 0.98 3.92 16 17 C -0.36 -21.02 9.28 84.06 0.78 -20.23 16 18 H 0.08 4.73 7.50 -2.91 -0.02 4.71 16 19 C 0.02 0.82 4.64 84.91 0.39 1.22 16 20 N -0.86 -43.43 11.12 21.66 0.24 -43.19 16 21 Si 0.98 40.61 29.67 68.60 2.04 42.65 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 C 0.10 4.21 10.45 83.49 0.87 5.08 16 26 N -0.35 -12.03 2.96 -341.71 -1.01 -13.04 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.02 6.24 -2.38 -0.01 1.01 16 30 H 0.06 1.36 8.06 -2.38 -0.02 1.34 16 31 H 0.06 1.00 8.07 -2.39 -0.02 0.98 16 32 H 0.10 1.62 5.84 -2.39 -0.01 1.61 16 33 H 0.06 1.01 7.34 -2.38 -0.02 0.99 16 34 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.02 0.71 7.76 -2.39 -0.02 0.69 16 37 H 0.17 2.90 8.05 -2.91 -0.02 2.88 16 38 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 39 H 0.18 3.48 8.06 -2.91 -0.02 3.45 16 40 H 0.19 6.00 3.16 -11.46 -0.04 5.97 16 41 H 0.06 2.48 6.87 -2.39 -0.02 2.46 16 42 H 0.09 4.25 5.17 -2.39 -0.01 4.24 16 43 H 0.08 2.97 5.60 -2.39 -0.01 2.96 16 44 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 45 H 0.14 6.50 7.69 -2.91 -0.02 6.48 16 Total: -1.00 -72.46 360.00 4.70 -67.76 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.98 Total: 29.26 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 7.75 Total: -1.45 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -6.00 Total: -97.87 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.07 Total: -40.34 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.04 Total: 42.65 kcal Total: -72.46 4.70 -67.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150412065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.318 kcal (2) G-P(sol) polarization free energy of solvation -72.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds