Wall clock time and date at job start Tue Mar 31 2020 10:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46510 * 109.47215 * 2 1 4 4 C 1.36935 * 119.99691 * 275.73073 * 3 2 1 5 5 H 1.08000 * 120.00302 * 33.27487 * 4 3 2 6 6 C 1.38810 * 119.99743 * 213.26120 * 4 3 2 7 7 N 1.31622 * 120.00011 * 17.28077 * 6 4 3 8 8 Si 1.86798 * 120.00104 * 197.27717 * 6 4 3 9 9 H 1.48496 * 109.47472 * 90.00432 * 8 6 4 10 10 H 1.48504 * 109.47159 * 210.00428 * 8 6 4 11 11 H 1.48503 * 109.46809 * 330.00063 * 8 6 4 12 12 C 1.46493 * 119.99631 * 95.73365 * 3 2 1 13 13 H 1.09005 * 109.46880 * 180.09587 * 12 3 2 14 14 C 1.52995 * 109.47606 * 60.09168 * 12 3 2 15 15 C 1.53004 * 109.47280 * 300.09113 * 12 3 2 16 16 N 1.46504 * 109.46699 * 305.00219 * 15 12 3 17 17 C 1.34783 * 119.99884 * 180.02562 * 16 15 12 18 18 O 1.21589 * 119.99576 * 359.97438 * 17 16 15 19 19 C 1.47573 * 120.00313 * 180.02562 * 17 16 15 20 20 C 1.40246 * 119.83032 * 359.96697 * 19 17 16 21 21 C 1.36194 * 120.37911 * 180.02562 * 20 19 17 22 22 C 1.39922 * 119.96175 * 0.02562 * 21 20 19 23 23 C 1.46252 * 133.84188 * 180.02562 * 22 21 20 24 24 C 1.34462 * 107.03117 * 179.36778 * 23 22 21 25 25 N 1.36558 * 109.97630 * 0.57029 * 24 23 22 26 26 H 0.96999 * 125.07095 * 179.48050 * 25 24 23 27 27 C 1.37824 * 109.85995 * 359.48870 * 25 24 23 28 28 C 1.38682 * 133.37159 * 180.02562 * 27 25 24 29 29 H 1.09003 * 109.47272 * 59.99680 * 1 2 3 30 30 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47232 * 300.00025 * 1 2 3 32 32 H 1.09000 * 109.47147 * 240.00471 * 2 1 3 33 33 H 1.09005 * 109.47492 * 119.99825 * 2 1 3 34 34 H 0.97000 * 120.00216 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46939 * 299.99780 * 14 12 3 36 36 H 1.09005 * 109.47154 * 59.99522 * 14 12 3 37 37 H 1.08997 * 109.47304 * 180.02562 * 14 12 3 38 38 H 1.09001 * 109.47195 * 185.00716 * 15 12 3 39 39 H 1.08996 * 109.46960 * 64.99969 * 15 12 3 40 40 H 0.97000 * 120.00714 * 359.97438 * 16 15 12 41 41 H 1.07996 * 119.81015 * 359.97438 * 20 19 17 42 42 H 1.08004 * 120.02209 * 179.97438 * 21 20 19 43 43 H 1.08001 * 126.48315 * 359.97438 * 23 22 21 44 44 H 1.08004 * 125.01082 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.16945 * 0.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4369 1.8811 -1.9831 6 6 3.1500 2.9987 -1.3438 7 7 4.1870 2.9918 -0.5333 8 14 3.0443 4.2633 -2.7146 9 1 2.3487 5.4768 -2.2161 10 1 4.4138 4.6258 -3.1603 11 1 2.2868 3.6925 -3.8572 12 6 2.3820 2.0295 1.2624 13 1 2.7188 3.0471 1.0644 14 6 3.5077 1.2413 1.9348 15 6 1.1630 2.0666 2.1864 16 7 0.0466 2.7172 1.4959 17 6 -1.1387 2.8637 2.1206 18 8 -1.2815 2.4555 3.2570 19 6 -2.2635 3.5185 1.4250 20 6 -2.0950 3.9876 0.1141 21 6 -3.1254 4.5941 -0.5382 22 6 -4.3603 4.7521 0.1004 23 6 -5.6390 5.3395 -0.2981 24 6 -6.4812 5.1905 0.7394 25 7 -5.8425 4.5673 1.7731 26 1 -6.2438 4.3575 2.6309 27 6 -4.5424 4.2813 1.4158 28 6 -3.4863 3.6697 2.0745 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.8966 3.6432 -0.6480 35 1 3.1707 0.2238 2.1328 36 1 4.3762 1.2149 1.2765 37 1 3.7779 1.7234 2.8743 38 1 1.4080 2.6267 3.0888 39 1 0.8802 1.0490 2.4557 40 1 0.1605 3.0432 0.5895 41 1 -1.1425 3.8681 -0.3806 42 1 -2.9891 4.9536 -1.5475 43 1 -5.8669 5.7968 -1.2496 44 1 -7.5087 5.5231 0.7562 45 1 -3.6130 3.3076 3.0841 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155460732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:33 Heat of formation + Delta-G solvation = 42.120699 kcal Electronic energy + Delta-G solvation = -26696.953643 eV Core-core repulsion = 23101.464643 eV Total energy + Delta-G solvation = -3595.489000 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.29313 -39.32814 -37.03315 -36.31584 -33.65513 -31.98483 -31.86117 -31.13848 -29.46178 -29.02887 -28.11631 -25.58004 -23.91832 -22.94441 -22.46147 -21.63487 -20.80702 -19.78791 -19.22690 -18.20507 -17.08094 -16.60605 -16.07143 -15.50477 -14.95368 -14.80477 -14.50514 -14.16285 -13.96985 -13.92278 -13.71442 -13.42906 -13.16514 -12.90496 -12.66010 -12.31298 -12.14724 -11.91038 -11.72618 -11.56249 -11.37697 -11.03762 -10.95156 -10.93046 -10.79801 -10.64839 -10.27224 -10.05522 -9.80226 -9.60768 -9.46255 -9.40827 -8.50870 -8.43718 -8.20474 -7.78704 -6.65516 -5.86986 -3.35751 0.85796 1.53181 2.51285 2.95300 3.31991 3.32410 3.41221 3.41848 3.83761 4.13558 4.43178 4.63829 4.76182 5.05004 5.17446 5.27846 5.33504 5.37789 5.42592 5.52418 5.69945 5.85521 5.95433 6.01788 6.09805 6.22100 6.30019 6.41582 6.44225 6.51374 6.55049 6.58391 6.60224 6.65731 6.66465 6.71993 6.86340 6.95048 7.05846 7.12250 7.20687 7.35986 7.50500 7.59678 7.78821 8.20490 8.44632 8.77131 9.17531 9.78978 10.36400 11.19565 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.004137 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.950288 B = 6766.419055 C = 7907.998349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.264 4.264 5 H 0.065 0.935 6 C 0.012 3.988 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.278 1.278 12 C 0.176 3.824 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.101 3.899 16 N -0.693 5.693 17 C 0.550 3.450 18 O -0.561 6.561 19 C -0.107 4.107 20 C -0.108 4.108 21 C -0.080 4.080 22 C -0.090 4.090 23 C -0.210 4.210 24 C 0.053 3.947 25 N -0.594 5.594 26 H 0.415 0.585 27 C 0.079 3.921 28 C -0.067 4.067 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.254 0.746 35 H 0.029 0.971 36 H 0.078 0.922 37 H 0.032 0.968 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.411 0.589 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.147 0.853 44 H 0.170 0.830 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.642 3.413 2.762 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.304 5.304 4 C -0.393 4.393 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.212 1.212 10 H -0.218 1.218 11 H -0.203 1.203 12 C 0.069 3.931 13 H 0.118 0.882 14 C -0.203 4.203 15 C -0.024 4.024 16 N -0.343 5.343 17 C 0.337 3.663 18 O -0.442 6.442 19 C -0.112 4.112 20 C -0.128 4.128 21 C -0.099 4.099 22 C -0.095 4.095 23 C -0.235 4.235 24 C -0.074 4.074 25 N -0.197 5.197 26 H 0.252 0.748 27 C -0.027 4.027 28 C -0.089 4.089 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.250 0.750 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.164 0.836 44 H 0.187 0.813 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.590 3.189 3.635 17.281 hybrid contribution -0.174 0.735 -0.777 1.083 sum -16.764 3.925 2.858 17.453 Atomic orbital electron populations 1.22452 0.99958 0.98996 1.01633 1.20756 0.91687 0.87409 0.98692 1.43890 1.75974 1.08310 1.02266 1.19108 1.08617 1.18210 0.93391 0.91772 1.25150 0.94510 1.01331 0.97792 1.70006 1.07839 1.35862 1.39579 0.86420 0.76998 0.82005 0.82141 1.21249 1.21808 1.20341 1.20499 0.88885 0.99546 0.84201 0.88226 1.22021 1.01125 0.97963 0.99234 1.22200 0.88061 0.96317 0.95835 1.45912 1.10732 1.58572 1.19128 1.18136 0.82901 0.79438 0.85811 1.90711 1.83556 1.51497 1.18474 1.19666 0.93947 1.02571 0.94998 1.20936 0.99693 0.98425 0.93742 1.20199 0.90847 0.99069 0.99768 1.19386 0.94766 1.01818 0.93552 1.21728 0.92183 1.09389 1.00222 1.21833 0.98335 0.99283 0.87915 1.41738 1.09518 1.52734 1.15718 0.74788 1.18088 0.85832 1.03283 0.95494 1.20034 0.89982 0.98961 0.99884 0.93399 0.94912 0.92934 0.94126 0.94541 0.93557 0.95149 0.90275 0.94845 0.92857 0.92722 0.75042 0.84825 0.85437 0.83567 0.81301 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 9.86 37.15 0.37 -2.79 16 2 C 0.14 2.86 5.67 -4.04 -0.02 2.84 16 3 N -0.58 -13.07 1.85 -165.66 -0.31 -13.38 16 4 C -0.26 -6.48 9.26 -15.06 -0.14 -6.62 16 5 H 0.06 1.59 7.89 -52.49 -0.41 1.18 16 6 C 0.01 0.31 4.85 -17.43 -0.08 0.23 16 7 N -0.89 -23.49 10.60 55.49 0.59 -22.90 16 8 Si 0.89 20.13 29.59 -169.99 -5.03 15.10 16 9 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 C 0.18 3.78 1.92 -67.93 -0.13 3.65 16 13 H 0.10 2.43 6.04 -51.93 -0.31 2.11 16 14 C -0.14 -2.96 9.05 37.15 0.34 -2.62 16 15 C 0.10 1.99 4.34 -4.04 -0.02 1.97 16 16 N -0.69 -13.06 3.93 -61.33 -0.24 -13.30 16 17 C 0.55 10.34 7.53 -12.45 -0.09 10.25 16 18 O -0.56 -11.91 16.31 5.29 0.09 -11.83 16 19 C -0.11 -1.76 5.87 -104.95 -0.62 -2.37 16 20 C -0.11 -1.63 9.46 -39.56 -0.37 -2.01 16 21 C -0.08 -1.09 10.03 -39.69 -0.40 -1.49 16 22 C -0.09 -1.19 6.37 -105.04 -0.67 -1.86 16 23 C -0.21 -2.17 11.08 -37.70 -0.42 -2.59 16 24 C 0.05 0.44 11.81 -16.78 -0.20 0.25 16 25 N -0.59 -5.61 6.07 -10.68 -0.06 -5.67 16 26 H 0.42 2.68 8.96 -40.82 -0.37 2.31 16 27 C 0.08 1.04 7.26 -84.00 -0.61 0.43 16 28 C -0.07 -0.99 9.61 -39.03 -0.37 -1.37 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 1.01 4.99 -51.93 -0.26 0.75 16 32 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 33 H 0.04 0.72 6.45 -51.93 -0.33 0.38 16 34 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 35 H 0.03 0.58 6.67 -51.93 -0.35 0.23 16 36 H 0.08 1.84 7.39 -51.93 -0.38 1.45 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.10 7.05 -51.93 -0.37 0.73 16 40 H 0.41 7.84 5.89 -40.82 -0.24 7.60 16 41 H 0.13 2.02 6.36 -52.49 -0.33 1.69 16 42 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 43 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 45 H 0.13 1.88 7.62 -52.49 -0.40 1.48 16 LS Contribution 362.10 15.07 5.46 5.46 Total: -1.00 -29.45 362.10 -9.23 -38.68 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -6.27 Total: 11.96 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -3.44 Total: -4.11 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.02 Total: -55.25 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.45 -9.23 -38.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155460732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.802 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds