Wall clock time and date at job start Tue Mar 31 2020 10:56:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 N 1.46510 * 109.47215 * 2 1
4 4 C 1.36935 * 119.99691 * 275.73073 * 3 2 1
5 5 H 1.08000 * 120.00302 * 33.27487 * 4 3 2
6 6 C 1.38810 * 119.99743 * 213.26120 * 4 3 2
7 7 N 1.31622 * 120.00011 * 17.28077 * 6 4 3
8 8 Si 1.86798 * 120.00104 * 197.27717 * 6 4 3
9 9 H 1.48496 * 109.47472 * 90.00432 * 8 6 4
10 10 H 1.48504 * 109.47159 * 210.00428 * 8 6 4
11 11 H 1.48503 * 109.46809 * 330.00063 * 8 6 4
12 12 C 1.46493 * 119.99631 * 95.73365 * 3 2 1
13 13 H 1.09005 * 109.46880 * 180.09587 * 12 3 2
14 14 C 1.52995 * 109.47606 * 60.09168 * 12 3 2
15 15 C 1.53004 * 109.47280 * 300.09113 * 12 3 2
16 16 N 1.46504 * 109.46699 * 305.00219 * 15 12 3
17 17 C 1.34783 * 119.99884 * 180.02562 * 16 15 12
18 18 O 1.21589 * 119.99576 * 359.97438 * 17 16 15
19 19 C 1.47573 * 120.00313 * 180.02562 * 17 16 15
20 20 C 1.40246 * 119.83032 * 359.96697 * 19 17 16
21 21 C 1.36194 * 120.37911 * 180.02562 * 20 19 17
22 22 C 1.39922 * 119.96175 * 0.02562 * 21 20 19
23 23 C 1.46252 * 133.84188 * 180.02562 * 22 21 20
24 24 C 1.34462 * 107.03117 * 179.36778 * 23 22 21
25 25 N 1.36558 * 109.97630 * 0.57029 * 24 23 22
26 26 H 0.96999 * 125.07095 * 179.48050 * 25 24 23
27 27 C 1.37824 * 109.85995 * 359.48870 * 25 24 23
28 28 C 1.38682 * 133.37159 * 180.02562 * 27 25 24
29 29 H 1.09003 * 109.47272 * 59.99680 * 1 2 3
30 30 H 1.09001 * 109.46997 * 179.97438 * 1 2 3
31 31 H 1.08996 * 109.47232 * 300.00025 * 1 2 3
32 32 H 1.09000 * 109.47147 * 240.00471 * 2 1 3
33 33 H 1.09005 * 109.47492 * 119.99825 * 2 1 3
34 34 H 0.97000 * 120.00216 * 179.97438 * 7 6 4
35 35 H 1.09005 * 109.46939 * 299.99780 * 14 12 3
36 36 H 1.09005 * 109.47154 * 59.99522 * 14 12 3
37 37 H 1.08997 * 109.47304 * 180.02562 * 14 12 3
38 38 H 1.09001 * 109.47195 * 185.00716 * 15 12 3
39 39 H 1.08996 * 109.46960 * 64.99969 * 15 12 3
40 40 H 0.97000 * 120.00714 * 359.97438 * 16 15 12
41 41 H 1.07996 * 119.81015 * 359.97438 * 20 19 17
42 42 H 1.08004 * 120.02209 * 179.97438 * 21 20 19
43 43 H 1.08001 * 126.48315 * 359.97438 * 23 22 21
44 44 H 1.08004 * 125.01082 * 180.02562 * 24 23 22
45 45 H 1.08001 * 120.16945 * 0.02562 * 28 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.1349 2.0662 -1.1800
5 1 1.4369 1.8811 -1.9831
6 6 3.1500 2.9987 -1.3438
7 7 4.1870 2.9918 -0.5333
8 14 3.0443 4.2633 -2.7146
9 1 2.3487 5.4768 -2.2161
10 1 4.4138 4.6258 -3.1603
11 1 2.2868 3.6925 -3.8572
12 6 2.3820 2.0295 1.2624
13 1 2.7188 3.0471 1.0644
14 6 3.5077 1.2413 1.9348
15 6 1.1630 2.0666 2.1864
16 7 0.0466 2.7172 1.4959
17 6 -1.1387 2.8637 2.1206
18 8 -1.2815 2.4555 3.2570
19 6 -2.2635 3.5185 1.4250
20 6 -2.0950 3.9876 0.1141
21 6 -3.1254 4.5941 -0.5382
22 6 -4.3603 4.7521 0.1004
23 6 -5.6390 5.3395 -0.2981
24 6 -6.4812 5.1905 0.7394
25 7 -5.8425 4.5673 1.7731
26 1 -6.2438 4.3575 2.6309
27 6 -4.5424 4.2813 1.4158
28 6 -3.4863 3.6697 2.0745
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8899
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 4.8966 3.6432 -0.6480
35 1 3.1707 0.2238 2.1328
36 1 4.3762 1.2149 1.2765
37 1 3.7779 1.7234 2.8743
38 1 1.4080 2.6267 3.0888
39 1 0.8802 1.0490 2.4557
40 1 0.1605 3.0432 0.5895
41 1 -1.1425 3.8681 -0.3806
42 1 -2.9891 4.9536 -1.5475
43 1 -5.8669 5.7968 -1.2496
44 1 -7.5087 5.5231 0.7562
45 1 -3.6130 3.3076 3.0841
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001155460732.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:56:32
Heat of formation + Delta-G solvation = 26.280259 kcal
Electronic energy + Delta-G solvation = -26697.640536 eV
Core-core repulsion = 23101.464643 eV
Total energy + Delta-G solvation = -3596.175893 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-42.21120 -40.75770 -38.65227 -37.48988 -35.27292 -33.70428 -32.97490 -32.73255
-30.54850 -30.05099 -29.81531 -27.05849 -25.76903 -24.14091 -23.54345 -23.26466
-21.60723 -21.15383 -20.91518 -19.30760 -18.69543 -17.90738 -17.23166 -16.88047
-16.66544 -16.43791 -15.76355 -15.57897 -15.26847 -15.12463 -14.90564 -14.71014
-14.31110 -14.21380 -13.98696 -13.87551 -13.78497 -13.49654 -13.19040 -12.79826
-12.77041 -12.70392 -12.54359 -12.53292 -12.37804 -12.03074 -12.00685 -11.83864
-11.34369 -11.15800 -10.96710 -10.76619 -10.40948 -9.94721 -9.26457 -8.69196
-8.51171 -7.79698 -5.29936 -0.22391 0.46705 1.51951 1.55997 1.61581
1.64578 2.08926 2.09888 2.48813 2.57438 2.96280 3.34668 3.66040
3.72791 3.84110 4.00870 4.16175 4.26636 4.31528 4.38205 4.47035
4.57290 4.66966 4.69852 4.75519 4.81944 4.89523 4.94954 4.98803
5.01925 5.02975 5.07641 5.23178 5.33031 5.34536 5.49613 5.52587
5.60562 5.67187 5.71755 5.76970 5.78787 5.89509 6.10231 6.52372
6.68097 6.70116 7.25118 7.29164 7.94640 8.47483 9.24327
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.014497 B = 0.004137 C = 0.003540
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1930.950288 B = 6766.419055 C = 7907.998349
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.140 3.860
3 N -0.591 5.591
4 C -0.262 4.262
5 H 0.062 0.938
6 C -0.030 4.030
7 N -0.914 5.914
8 Si 0.950 3.050
9 H -0.284 1.284
10 H -0.302 1.302
11 H -0.272 1.272
12 C 0.183 3.817
13 H 0.070 0.930
14 C -0.135 4.135
15 C 0.114 3.886
16 N -0.693 5.693
17 C 0.552 3.448
18 O -0.592 6.592
19 C -0.135 4.135
20 C -0.118 4.118
21 C -0.084 4.084
22 C -0.101 4.101
23 C -0.234 4.234
24 C 0.082 3.918
25 N -0.584 5.584
26 H 0.431 0.569
27 C 0.063 3.937
28 C -0.066 4.066
29 H 0.040 0.960
30 H 0.054 0.946
31 H 0.043 0.957
32 H 0.032 0.968
33 H 0.044 0.956
34 H 0.248 0.752
35 H 0.042 0.958
36 H 0.049 0.951
37 H 0.049 0.951
38 H 0.054 0.946
39 H 0.053 0.947
40 H 0.410 0.590
41 H 0.125 0.875
42 H 0.145 0.855
43 H 0.167 0.833
44 H 0.219 0.781
45 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.851 4.086 2.369 20.405
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.015 3.985
3 N -0.313 5.313
4 C -0.392 4.392
5 H 0.079 0.921
6 C -0.227 4.227
7 N -0.558 5.558
8 Si 0.779 3.221
9 H -0.210 1.210
10 H -0.229 1.229
11 H -0.197 1.197
12 C 0.075 3.925
13 H 0.089 0.911
14 C -0.194 4.194
15 C -0.012 4.012
16 N -0.342 5.342
17 C 0.341 3.659
18 O -0.475 6.475
19 C -0.140 4.140
20 C -0.138 4.138
21 C -0.103 4.103
22 C -0.107 4.107
23 C -0.258 4.258
24 C -0.046 4.046
25 N -0.188 5.188
26 H 0.270 0.730
27 C -0.044 4.044
28 C -0.087 4.087
29 H 0.059 0.941
30 H 0.073 0.927
31 H 0.062 0.938
32 H 0.051 0.949
33 H 0.062 0.938
34 H 0.057 0.943
35 H 0.061 0.939
36 H 0.068 0.932
37 H 0.068 0.932
38 H 0.072 0.928
39 H 0.071 0.929
40 H 0.248 0.752
41 H 0.143 0.857
42 H 0.163 0.837
43 H 0.185 0.815
44 H 0.236 0.764
45 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -19.831 3.848 3.250 20.460
hybrid contribution 0.648 0.539 -0.647 1.063
sum -19.182 4.387 2.602 19.849
Atomic orbital electron populations
1.22268 0.98282 1.00188 1.00822 1.20822 0.92821 0.86244 0.98651
1.44005 1.76115 1.09178 1.02036 1.19255 1.07980 1.18101 0.93897
0.92078 1.25695 0.94440 1.02894 0.99694 1.70138 1.08338 1.36318
1.41033 0.85551 0.76157 0.80182 0.80222 1.21017 1.22945 1.19686
1.20342 0.89791 0.98020 0.84303 0.91148 1.21883 0.99575 0.98779
0.99185 1.21958 0.87589 0.96330 0.95331 1.45868 1.10771 1.58603
1.18979 1.18501 0.83207 0.78775 0.85429 1.90675 1.84077 1.53016
1.19746 1.19478 0.93817 1.04868 0.95792 1.20864 0.99994 0.99470
0.93494 1.20407 0.90798 0.98574 1.00505 1.19820 0.95693 1.01464
0.93682 1.22077 0.91091 1.10536 1.02090 1.22643 0.99743 0.96022
0.86174 1.41872 1.08191 1.51866 1.16854 0.72979 1.18088 0.87039
1.03593 0.95671 1.20037 0.90124 0.98793 0.99757 0.94106 0.92673
0.93763 0.94915 0.93757 0.94258 0.93874 0.93154 0.93174 0.92750
0.92879 0.75194 0.85702 0.83678 0.81532 0.76429 0.85268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.66 9.86 71.98 0.71 -4.95 16
2 C 0.14 5.66 5.67 86.37 0.49 6.15 16
3 N -0.59 -26.84 1.85 -678.03 -1.25 -28.09 16
4 C -0.26 -13.04 9.26 84.03 0.78 -12.26 16
5 H 0.06 3.04 7.89 -2.91 -0.02 3.02 16
6 C -0.03 -1.51 4.85 84.86 0.41 -1.10 16
7 N -0.91 -49.42 10.60 21.65 0.23 -49.19 16
8 Si 0.95 41.96 29.59 68.60 2.03 43.99 16
9 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16
10 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16
11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16
12 C 0.18 7.99 1.92 44.99 0.09 8.08 16
13 H 0.07 3.54 6.04 -2.38 -0.01 3.52 16
14 C -0.13 -5.58 9.05 71.98 0.65 -4.93 16
15 C 0.11 4.52 4.34 86.38 0.37 4.89 16
16 N -0.69 -26.77 3.93 -466.21 -1.83 -28.61 16
17 C 0.55 21.29 7.53 86.71 0.65 21.94 16
18 O -0.59 -25.67 16.31 -4.00 -0.07 -25.73 16
19 C -0.14 -4.52 5.87 -20.07 -0.12 -4.63 16
20 C -0.12 -3.63 9.46 22.28 0.21 -3.42 16
21 C -0.08 -2.23 10.03 22.20 0.22 -2.01 16
22 C -0.10 -2.49 6.37 -20.14 -0.13 -2.61 16
23 C -0.23 -3.99 11.08 23.49 0.26 -3.73 16
24 C 0.08 0.97 11.81 83.09 0.98 1.95 16
25 N -0.58 -9.07 6.07 -187.71 -1.14 -10.20 16
26 H 0.43 4.06 8.96 -92.71 -0.83 3.23 16
27 C 0.06 1.55 7.26 38.96 0.28 1.83 16
28 C -0.07 -1.93 9.61 22.63 0.22 -1.71 16
29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16
30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
31 H 0.04 1.68 4.99 -2.39 -0.01 1.66 16
32 H 0.03 1.36 8.09 -2.39 -0.02 1.34 16
33 H 0.04 1.71 6.45 -2.38 -0.02 1.69 16
34 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16
35 H 0.04 1.63 6.67 -2.38 -0.02 1.62 16
36 H 0.05 2.37 7.39 -2.38 -0.02 2.36 16
37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16
38 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16
39 H 0.05 2.13 7.05 -2.39 -0.02 2.11 16
40 H 0.41 16.14 5.89 -92.71 -0.55 15.60 16
41 H 0.13 3.93 6.36 -2.91 -0.02 3.91 16
42 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16
43 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16
44 H 0.22 0.42 8.06 -2.91 -0.02 0.40 16
45 H 0.13 3.73 7.62 -2.91 -0.02 3.71 16
Total: -1.00 -64.65 362.10 3.70 -60.95
By element:
Atomic # 1 Polarization: 33.74 SS G_CDS: -0.35 Total: 33.39 kcal
Atomic # 6 Polarization: -2.59 SS G_CDS: 6.08 Total: 3.49 kcal
Atomic # 7 Polarization: -112.09 SS G_CDS: -4.00 Total: -116.09 kcal
Atomic # 8 Polarization: -25.67 SS G_CDS: -0.07 Total: -25.73 kcal
Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal
Total: -64.65 3.70 -60.95 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001155460732.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.228 kcal
(2) G-P(sol) polarization free energy of solvation -64.651 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.577 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.948 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.280 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds