Wall clock time and date at job start Tue Mar 31 2020 10:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46510 * 109.47215 * 2 1 4 4 C 1.36935 * 119.99691 * 275.73073 * 3 2 1 5 5 H 1.08000 * 120.00302 * 33.27487 * 4 3 2 6 6 C 1.38810 * 119.99743 * 213.26120 * 4 3 2 7 7 N 1.31622 * 120.00011 * 17.28077 * 6 4 3 8 8 Si 1.86798 * 120.00104 * 197.27717 * 6 4 3 9 9 H 1.48496 * 109.47472 * 90.00432 * 8 6 4 10 10 H 1.48504 * 109.47159 * 210.00428 * 8 6 4 11 11 H 1.48503 * 109.46809 * 330.00063 * 8 6 4 12 12 C 1.46493 * 119.99631 * 95.73365 * 3 2 1 13 13 H 1.09005 * 109.46880 * 180.09587 * 12 3 2 14 14 C 1.52995 * 109.47606 * 60.09168 * 12 3 2 15 15 C 1.53004 * 109.47280 * 300.09113 * 12 3 2 16 16 N 1.46504 * 109.46699 * 305.00219 * 15 12 3 17 17 C 1.34783 * 119.99884 * 180.02562 * 16 15 12 18 18 O 1.21589 * 119.99576 * 359.97438 * 17 16 15 19 19 C 1.47573 * 120.00313 * 180.02562 * 17 16 15 20 20 C 1.40246 * 119.83032 * 359.96697 * 19 17 16 21 21 C 1.36194 * 120.37911 * 180.02562 * 20 19 17 22 22 C 1.39922 * 119.96175 * 0.02562 * 21 20 19 23 23 C 1.46252 * 133.84188 * 180.02562 * 22 21 20 24 24 C 1.34462 * 107.03117 * 179.36778 * 23 22 21 25 25 N 1.36558 * 109.97630 * 0.57029 * 24 23 22 26 26 H 0.96999 * 125.07095 * 179.48050 * 25 24 23 27 27 C 1.37824 * 109.85995 * 359.48870 * 25 24 23 28 28 C 1.38682 * 133.37159 * 180.02562 * 27 25 24 29 29 H 1.09003 * 109.47272 * 59.99680 * 1 2 3 30 30 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47232 * 300.00025 * 1 2 3 32 32 H 1.09000 * 109.47147 * 240.00471 * 2 1 3 33 33 H 1.09005 * 109.47492 * 119.99825 * 2 1 3 34 34 H 0.97000 * 120.00216 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46939 * 299.99780 * 14 12 3 36 36 H 1.09005 * 109.47154 * 59.99522 * 14 12 3 37 37 H 1.08997 * 109.47304 * 180.02562 * 14 12 3 38 38 H 1.09001 * 109.47195 * 185.00716 * 15 12 3 39 39 H 1.08996 * 109.46960 * 64.99969 * 15 12 3 40 40 H 0.97000 * 120.00714 * 359.97438 * 16 15 12 41 41 H 1.07996 * 119.81015 * 359.97438 * 20 19 17 42 42 H 1.08004 * 120.02209 * 179.97438 * 21 20 19 43 43 H 1.08001 * 126.48315 * 359.97438 * 23 22 21 44 44 H 1.08004 * 125.01082 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.16945 * 0.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4369 1.8811 -1.9831 6 6 3.1500 2.9987 -1.3438 7 7 4.1870 2.9918 -0.5333 8 14 3.0443 4.2633 -2.7146 9 1 2.3487 5.4768 -2.2161 10 1 4.4138 4.6258 -3.1603 11 1 2.2868 3.6925 -3.8572 12 6 2.3820 2.0295 1.2624 13 1 2.7188 3.0471 1.0644 14 6 3.5077 1.2413 1.9348 15 6 1.1630 2.0666 2.1864 16 7 0.0466 2.7172 1.4959 17 6 -1.1387 2.8637 2.1206 18 8 -1.2815 2.4555 3.2570 19 6 -2.2635 3.5185 1.4250 20 6 -2.0950 3.9876 0.1141 21 6 -3.1254 4.5941 -0.5382 22 6 -4.3603 4.7521 0.1004 23 6 -5.6390 5.3395 -0.2981 24 6 -6.4812 5.1905 0.7394 25 7 -5.8425 4.5673 1.7731 26 1 -6.2438 4.3575 2.6309 27 6 -4.5424 4.2813 1.4158 28 6 -3.4863 3.6697 2.0745 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.8966 3.6432 -0.6480 35 1 3.1707 0.2238 2.1328 36 1 4.3762 1.2149 1.2765 37 1 3.7779 1.7234 2.8743 38 1 1.4080 2.6267 3.0888 39 1 0.8802 1.0490 2.4557 40 1 0.1605 3.0432 0.5895 41 1 -1.1425 3.8681 -0.3806 42 1 -2.9891 4.9536 -1.5475 43 1 -5.8669 5.7968 -1.2496 44 1 -7.5087 5.5231 0.7562 45 1 -3.6130 3.3076 3.0841 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155460732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:32 Heat of formation + Delta-G solvation = 26.280259 kcal Electronic energy + Delta-G solvation = -26697.640536 eV Core-core repulsion = 23101.464643 eV Total energy + Delta-G solvation = -3596.175893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.21120 -40.75770 -38.65227 -37.48988 -35.27292 -33.70428 -32.97490 -32.73255 -30.54850 -30.05099 -29.81531 -27.05849 -25.76903 -24.14091 -23.54345 -23.26466 -21.60723 -21.15383 -20.91518 -19.30760 -18.69543 -17.90738 -17.23166 -16.88047 -16.66544 -16.43791 -15.76355 -15.57897 -15.26847 -15.12463 -14.90564 -14.71014 -14.31110 -14.21380 -13.98696 -13.87551 -13.78497 -13.49654 -13.19040 -12.79826 -12.77041 -12.70392 -12.54359 -12.53292 -12.37804 -12.03074 -12.00685 -11.83864 -11.34369 -11.15800 -10.96710 -10.76619 -10.40948 -9.94721 -9.26457 -8.69196 -8.51171 -7.79698 -5.29936 -0.22391 0.46705 1.51951 1.55997 1.61581 1.64578 2.08926 2.09888 2.48813 2.57438 2.96280 3.34668 3.66040 3.72791 3.84110 4.00870 4.16175 4.26636 4.31528 4.38205 4.47035 4.57290 4.66966 4.69852 4.75519 4.81944 4.89523 4.94954 4.98803 5.01925 5.02975 5.07641 5.23178 5.33031 5.34536 5.49613 5.52587 5.60562 5.67187 5.71755 5.76970 5.78787 5.89509 6.10231 6.52372 6.68097 6.70116 7.25118 7.29164 7.94640 8.47483 9.24327 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.004137 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.950288 B = 6766.419055 C = 7907.998349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 N -0.591 5.591 4 C -0.262 4.262 5 H 0.062 0.938 6 C -0.030 4.030 7 N -0.914 5.914 8 Si 0.950 3.050 9 H -0.284 1.284 10 H -0.302 1.302 11 H -0.272 1.272 12 C 0.183 3.817 13 H 0.070 0.930 14 C -0.135 4.135 15 C 0.114 3.886 16 N -0.693 5.693 17 C 0.552 3.448 18 O -0.592 6.592 19 C -0.135 4.135 20 C -0.118 4.118 21 C -0.084 4.084 22 C -0.101 4.101 23 C -0.234 4.234 24 C 0.082 3.918 25 N -0.584 5.584 26 H 0.431 0.569 27 C 0.063 3.937 28 C -0.066 4.066 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.248 0.752 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.410 0.590 41 H 0.125 0.875 42 H 0.145 0.855 43 H 0.167 0.833 44 H 0.219 0.781 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.851 4.086 2.369 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.015 3.985 3 N -0.313 5.313 4 C -0.392 4.392 5 H 0.079 0.921 6 C -0.227 4.227 7 N -0.558 5.558 8 Si 0.779 3.221 9 H -0.210 1.210 10 H -0.229 1.229 11 H -0.197 1.197 12 C 0.075 3.925 13 H 0.089 0.911 14 C -0.194 4.194 15 C -0.012 4.012 16 N -0.342 5.342 17 C 0.341 3.659 18 O -0.475 6.475 19 C -0.140 4.140 20 C -0.138 4.138 21 C -0.103 4.103 22 C -0.107 4.107 23 C -0.258 4.258 24 C -0.046 4.046 25 N -0.188 5.188 26 H 0.270 0.730 27 C -0.044 4.044 28 C -0.087 4.087 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.248 0.752 41 H 0.143 0.857 42 H 0.163 0.837 43 H 0.185 0.815 44 H 0.236 0.764 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.831 3.848 3.250 20.460 hybrid contribution 0.648 0.539 -0.647 1.063 sum -19.182 4.387 2.602 19.849 Atomic orbital electron populations 1.22268 0.98282 1.00188 1.00822 1.20822 0.92821 0.86244 0.98651 1.44005 1.76115 1.09178 1.02036 1.19255 1.07980 1.18101 0.93897 0.92078 1.25695 0.94440 1.02894 0.99694 1.70138 1.08338 1.36318 1.41033 0.85551 0.76157 0.80182 0.80222 1.21017 1.22945 1.19686 1.20342 0.89791 0.98020 0.84303 0.91148 1.21883 0.99575 0.98779 0.99185 1.21958 0.87589 0.96330 0.95331 1.45868 1.10771 1.58603 1.18979 1.18501 0.83207 0.78775 0.85429 1.90675 1.84077 1.53016 1.19746 1.19478 0.93817 1.04868 0.95792 1.20864 0.99994 0.99470 0.93494 1.20407 0.90798 0.98574 1.00505 1.19820 0.95693 1.01464 0.93682 1.22077 0.91091 1.10536 1.02090 1.22643 0.99743 0.96022 0.86174 1.41872 1.08191 1.51866 1.16854 0.72979 1.18088 0.87039 1.03593 0.95671 1.20037 0.90124 0.98793 0.99757 0.94106 0.92673 0.93763 0.94915 0.93757 0.94258 0.93874 0.93154 0.93174 0.92750 0.92879 0.75194 0.85702 0.83678 0.81532 0.76429 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.66 9.86 71.98 0.71 -4.95 16 2 C 0.14 5.66 5.67 86.37 0.49 6.15 16 3 N -0.59 -26.84 1.85 -678.03 -1.25 -28.09 16 4 C -0.26 -13.04 9.26 84.03 0.78 -12.26 16 5 H 0.06 3.04 7.89 -2.91 -0.02 3.02 16 6 C -0.03 -1.51 4.85 84.86 0.41 -1.10 16 7 N -0.91 -49.42 10.60 21.65 0.23 -49.19 16 8 Si 0.95 41.96 29.59 68.60 2.03 43.99 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 C 0.18 7.99 1.92 44.99 0.09 8.08 16 13 H 0.07 3.54 6.04 -2.38 -0.01 3.52 16 14 C -0.13 -5.58 9.05 71.98 0.65 -4.93 16 15 C 0.11 4.52 4.34 86.38 0.37 4.89 16 16 N -0.69 -26.77 3.93 -466.21 -1.83 -28.61 16 17 C 0.55 21.29 7.53 86.71 0.65 21.94 16 18 O -0.59 -25.67 16.31 -4.00 -0.07 -25.73 16 19 C -0.14 -4.52 5.87 -20.07 -0.12 -4.63 16 20 C -0.12 -3.63 9.46 22.28 0.21 -3.42 16 21 C -0.08 -2.23 10.03 22.20 0.22 -2.01 16 22 C -0.10 -2.49 6.37 -20.14 -0.13 -2.61 16 23 C -0.23 -3.99 11.08 23.49 0.26 -3.73 16 24 C 0.08 0.97 11.81 83.09 0.98 1.95 16 25 N -0.58 -9.07 6.07 -187.71 -1.14 -10.20 16 26 H 0.43 4.06 8.96 -92.71 -0.83 3.23 16 27 C 0.06 1.55 7.26 38.96 0.28 1.83 16 28 C -0.07 -1.93 9.61 22.63 0.22 -1.71 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.68 4.99 -2.39 -0.01 1.66 16 32 H 0.03 1.36 8.09 -2.39 -0.02 1.34 16 33 H 0.04 1.71 6.45 -2.38 -0.02 1.69 16 34 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 35 H 0.04 1.63 6.67 -2.38 -0.02 1.62 16 36 H 0.05 2.37 7.39 -2.38 -0.02 2.36 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 2.13 7.05 -2.39 -0.02 2.11 16 40 H 0.41 16.14 5.89 -92.71 -0.55 15.60 16 41 H 0.13 3.93 6.36 -2.91 -0.02 3.91 16 42 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 43 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 44 H 0.22 0.42 8.06 -2.91 -0.02 0.40 16 45 H 0.13 3.73 7.62 -2.91 -0.02 3.71 16 Total: -1.00 -64.65 362.10 3.70 -60.95 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.35 Total: 33.39 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 6.08 Total: 3.49 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -4.00 Total: -116.09 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.07 Total: -25.73 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -64.65 3.70 -60.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155460732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.228 kcal (2) G-P(sol) polarization free energy of solvation -64.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds