Wall clock time and date at job start Tue Mar 31 2020 10:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47524 * 2 1 4 4 C 1.46506 * 120.00075 * 270.00490 * 3 2 1 5 5 C 1.50700 * 109.47000 * 270.00058 * 4 3 2 6 6 H 1.07996 * 119.99847 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99905 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00060 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00042 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47373 * 89.99986 * 9 7 5 11 11 H 1.48504 * 109.47190 * 210.00126 * 9 7 5 12 12 H 1.48494 * 109.47249 * 330.00084 * 9 7 5 13 13 C 1.39000 * 120.00041 * 90.00075 * 3 2 1 14 14 C 1.39135 * 119.70622 * 5.00380 * 13 3 2 15 15 C 1.38302 * 119.09426 * 180.27609 * 14 13 3 16 16 C 1.38884 * 118.50563 * 359.52560 * 15 14 13 17 17 C 1.50697 * 120.33340 * 180.22425 * 16 15 14 18 18 C 1.47198 * 109.54620 * 60.05184 * 17 16 15 19 19 N 7.61247 * 116.52461 * 63.99952 * 2 1 3 20 20 C 1.53181 * 109.54159 * 299.78901 * 17 16 15 21 21 C 1.53096 * 109.16463 * 183.15196 * 20 17 16 22 22 O 1.42905 * 109.41257 * 57.60769 * 21 20 17 23 23 C 1.42905 * 114.09963 * 298.84376 * 22 21 20 24 24 C 1.53095 * 109.41358 * 61.15794 * 23 22 21 25 25 C 1.38021 * 119.32898 * 0.45224 * 16 15 14 26 26 N 1.31965 * 120.85647 * 359.79339 * 25 16 15 27 27 H 1.09004 * 109.47391 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46778 * 299.99842 * 1 2 3 29 29 H 1.08997 * 109.47130 * 60.00164 * 1 2 3 30 30 H 1.09005 * 109.46778 * 240.00157 * 2 1 3 31 31 H 1.09005 * 109.47378 * 120.00432 * 2 1 3 32 32 H 1.08998 * 109.46945 * 29.99473 * 4 3 2 33 33 H 1.08997 * 109.47412 * 149.99307 * 4 3 2 34 34 H 0.97000 * 120.00353 * 180.02562 * 8 7 5 35 35 H 1.08002 * 120.44854 * 359.97438 * 14 13 3 36 36 H 1.08000 * 120.73999 * 179.72440 * 15 14 13 37 37 H 1.09000 * 109.52141 * 303.05628 * 20 17 16 38 38 H 1.09004 * 109.52537 * 63.24688 * 20 17 16 39 39 H 1.08998 * 109.48079 * 297.62506 * 21 20 17 40 40 H 1.08999 * 109.49304 * 177.59504 * 21 20 17 41 41 H 1.09000 * 109.47770 * 301.17775 * 23 22 21 42 42 H 1.08997 * 109.49053 * 181.14767 * 23 22 21 43 43 H 1.09000 * 109.52227 * 182.48835 * 24 23 22 44 44 H 1.08989 * 109.52337 * 62.29615 * 24 23 22 45 45 H 1.08004 * 119.56527 * 179.76384 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3428 1.2307 -1.0960 7 6 4.1490 2.3895 -2.8781 8 7 5.3912 2.1832 -3.2576 9 14 3.0123 3.4339 -3.9300 10 1 3.1147 4.8544 -3.5093 11 1 3.4057 3.3106 -5.3566 12 1 1.6129 2.9671 -3.7602 13 6 2.2501 2.0364 1.2038 14 6 2.1169 1.3433 2.4028 15 6 2.3448 2.0092 3.5934 16 6 2.7096 3.3484 3.5445 17 6 2.9728 4.1124 4.8165 18 6 4.0772 3.4766 5.5533 19 7 4.9296 2.9859 6.1218 20 6 1.7101 4.1143 5.6837 21 6 1.9618 4.9581 6.9361 22 8 2.3366 6.2819 6.5495 23 6 3.5367 6.3462 5.7764 24 6 3.3482 5.5582 4.4775 25 6 2.8239 3.9736 2.3194 26 7 2.5953 3.3146 1.1992 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 5.7172 2.5736 -4.0835 35 1 1.8344 0.3009 2.4040 36 1 2.2446 1.4982 4.5396 37 1 0.8808 4.5397 5.1185 38 1 1.4671 3.0926 5.9757 39 1 2.7643 4.5094 7.5214 40 1 1.0528 4.9984 7.5362 41 1 4.3599 5.9157 6.3466 42 1 3.7624 7.3863 5.5411 43 1 4.2769 5.5690 3.9068 44 1 2.5520 6.0126 3.8880 45 1 3.1035 5.0160 2.2771 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:53 Heat of formation + Delta-G solvation = 28.612680 kcal Electronic energy + Delta-G solvation = -26333.031964 eV Core-core repulsion = 22736.957213 eV Total energy + Delta-G solvation = -3596.074752 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.81375 -39.39027 -37.00169 -36.24297 -34.37234 -32.80168 -32.08104 -31.44638 -30.62604 -29.60632 -27.20431 -25.54286 -24.47043 -23.33463 -22.69291 -22.15809 -21.47227 -20.15850 -17.34939 -17.17424 -16.89699 -16.46211 -16.34529 -15.99064 -15.32535 -14.80094 -14.53274 -14.43111 -14.40319 -14.26454 -13.80590 -13.41114 -13.19669 -12.99179 -12.82108 -12.63498 -12.56698 -12.48517 -12.24158 -12.05071 -11.93812 -11.71006 -11.61912 -11.37188 -11.03817 -10.98994 -10.69094 -10.61320 -10.50713 -10.29182 -9.86429 -9.63938 -9.43790 -9.15217 -8.78939 -8.59040 -6.87835 -6.09818 -4.08430 1.63840 1.73706 2.65276 2.71529 3.27131 3.33176 3.34679 3.57447 3.62526 3.75140 4.27478 4.37808 4.40773 4.48511 4.55214 4.63333 4.91793 4.93934 5.08043 5.13858 5.21745 5.27450 5.28147 5.36985 5.40355 5.42474 5.48561 5.53706 5.57128 5.68548 5.74781 5.78991 5.83384 5.95722 6.06694 6.13274 6.29216 6.38698 6.49836 6.68228 6.82313 6.88661 7.05216 7.46238 7.59440 7.65599 8.04801 8.49221 8.74000 8.94667 9.50311 11.03638 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.003603 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.394199 B = 7769.008796 C = 8522.729918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 N -0.579 5.579 4 C 0.223 3.777 5 C -0.526 4.526 6 H 0.072 0.928 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.430 3.570 14 C -0.254 4.254 15 C -0.019 4.019 16 C -0.233 4.233 17 C 0.104 3.896 18 C 0.219 3.781 19 N -0.434 5.434 20 C -0.139 4.139 21 C 0.056 3.944 22 O -0.377 6.377 23 C 0.057 3.943 24 C -0.149 4.149 25 C 0.172 3.828 26 N -0.524 5.524 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.101 0.899 41 H 0.048 0.952 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.081 3.746 16.719 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.005 4.005 3 N -0.285 5.285 4 C 0.102 3.898 5 C -0.565 4.565 6 H 0.090 0.910 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.193 3.807 14 C -0.279 4.279 15 C -0.045 4.045 16 C -0.240 4.240 17 C 0.099 3.901 18 C -0.100 4.100 19 N -0.109 5.109 20 C -0.177 4.177 21 C -0.021 4.021 22 O -0.296 6.296 23 C -0.019 4.019 24 C -0.188 4.188 25 C 0.010 3.990 26 N -0.239 5.239 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.138 0.862 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.119 0.881 41 H 0.066 0.934 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.120 0.880 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.721 3.467 16.414 19.389 hybrid contribution -0.472 -0.155 -0.259 0.561 sum -10.194 3.312 16.155 19.387 Atomic orbital electron populations 1.22226 0.96757 1.01486 1.02279 1.21409 0.93280 0.82814 1.03028 1.46863 1.65434 1.12248 1.03929 1.19680 0.96932 0.93550 0.79623 1.21354 0.95392 1.32748 1.07019 0.91002 1.24845 0.94933 0.95867 0.97312 1.69901 1.15187 1.45065 1.23568 0.86857 0.81454 0.81602 0.79780 1.19841 1.21219 1.19151 1.18464 0.87788 0.88289 0.86171 1.21343 1.13570 1.01197 0.91821 1.20898 0.93136 0.92972 0.97468 1.19728 1.14996 0.95726 0.93590 1.16814 0.88331 0.93597 0.91330 1.29111 0.94220 0.93519 0.93100 1.81200 1.10381 1.09006 1.10281 1.22350 0.96572 1.01999 0.96804 1.22663 1.00710 0.83311 0.95385 1.87952 1.42903 1.26993 1.71747 1.22664 0.86990 1.01524 0.90763 1.22434 1.04605 0.92349 0.99393 1.22398 0.91439 0.99133 0.85995 1.67419 1.18578 1.07853 1.30090 0.92035 0.92813 0.92323 0.89707 0.91316 0.95711 0.93884 0.92609 0.85352 0.86164 0.88450 0.89947 0.93429 0.88120 0.93360 0.87863 0.89181 0.88048 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.12 1.87 5.97 -4.05 -0.02 1.84 16 3 N -0.58 -11.49 2.57 -175.21 -0.45 -11.94 16 4 C 0.22 5.22 4.29 -5.19 -0.02 5.20 16 5 C -0.53 -14.70 9.94 -34.44 -0.34 -15.05 16 6 H 0.07 2.25 8.06 -52.49 -0.42 1.82 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 9 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 13 C 0.43 8.13 7.37 -155.02 -1.14 6.99 16 14 C -0.25 -3.90 9.27 -39.22 -0.36 -4.26 16 15 C -0.02 -0.25 9.00 -39.32 -0.35 -0.61 16 16 C -0.23 -3.01 4.74 -104.46 -0.50 -3.51 16 17 C 0.10 1.07 0.57 -158.27 -0.09 0.98 16 18 C 0.22 2.77 11.36 -20.76 -0.24 2.53 16 19 N -0.43 -6.51 18.54 42.16 0.78 -5.73 16 20 C -0.14 -1.13 4.67 -26.59 -0.12 -1.25 16 21 C 0.06 0.45 6.61 37.21 0.25 0.70 16 22 O -0.38 -3.61 10.77 -35.23 -0.38 -3.99 16 23 C 0.06 0.49 6.61 37.21 0.25 0.73 16 24 C -0.15 -1.32 3.55 -26.59 -0.09 -1.41 16 25 C 0.17 2.60 10.16 -17.57 -0.18 2.42 16 26 N -0.52 -10.21 9.08 -12.44 -0.11 -10.32 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 31 H 0.07 0.95 5.98 -51.93 -0.31 0.64 16 32 H 0.03 0.57 7.13 -51.93 -0.37 0.20 16 33 H 0.04 1.05 6.73 -51.93 -0.35 0.70 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.13 1.72 6.03 -52.49 -0.32 1.41 16 36 H 0.12 1.31 7.71 -52.49 -0.40 0.91 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.60 7.60 -51.93 -0.39 0.21 16 39 H 0.05 0.41 7.39 -51.93 -0.38 0.03 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.44 7.39 -51.93 -0.38 0.06 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.79 7.73 -51.93 -0.40 0.39 16 44 H 0.10 0.79 7.34 -51.94 -0.38 0.41 16 45 H 0.15 1.88 5.90 -52.48 -0.31 1.57 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -33.48 363.15 -7.83 -41.30 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.55 Total: -0.08 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.69 Total: -4.51 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.99 Total: -54.59 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.38 Total: -3.99 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.48 -7.83 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.917 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds