Wall clock time and date at job start Tue Mar 31 2020 10:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47524 * 2 1 4 4 C 1.46506 * 120.00075 * 270.00490 * 3 2 1 5 5 C 1.50700 * 109.47000 * 270.00058 * 4 3 2 6 6 H 1.07996 * 119.99847 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99905 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00060 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00042 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47373 * 89.99986 * 9 7 5 11 11 H 1.48504 * 109.47190 * 210.00126 * 9 7 5 12 12 H 1.48494 * 109.47249 * 330.00084 * 9 7 5 13 13 C 1.39000 * 120.00041 * 90.00075 * 3 2 1 14 14 C 1.39135 * 119.70622 * 5.00380 * 13 3 2 15 15 C 1.38302 * 119.09426 * 180.27609 * 14 13 3 16 16 C 1.38884 * 118.50563 * 359.52560 * 15 14 13 17 17 C 1.50697 * 120.33340 * 180.22425 * 16 15 14 18 18 C 1.47198 * 109.54620 * 60.05184 * 17 16 15 19 19 N 7.61247 * 116.52461 * 63.99952 * 2 1 3 20 20 C 1.53181 * 109.54159 * 299.78901 * 17 16 15 21 21 C 1.53096 * 109.16463 * 183.15196 * 20 17 16 22 22 O 1.42905 * 109.41257 * 57.60769 * 21 20 17 23 23 C 1.42905 * 114.09963 * 298.84376 * 22 21 20 24 24 C 1.53095 * 109.41358 * 61.15794 * 23 22 21 25 25 C 1.38021 * 119.32898 * 0.45224 * 16 15 14 26 26 N 1.31965 * 120.85647 * 359.79339 * 25 16 15 27 27 H 1.09004 * 109.47391 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46778 * 299.99842 * 1 2 3 29 29 H 1.08997 * 109.47130 * 60.00164 * 1 2 3 30 30 H 1.09005 * 109.46778 * 240.00157 * 2 1 3 31 31 H 1.09005 * 109.47378 * 120.00432 * 2 1 3 32 32 H 1.08998 * 109.46945 * 29.99473 * 4 3 2 33 33 H 1.08997 * 109.47412 * 149.99307 * 4 3 2 34 34 H 0.97000 * 120.00353 * 180.02562 * 8 7 5 35 35 H 1.08002 * 120.44854 * 359.97438 * 14 13 3 36 36 H 1.08000 * 120.73999 * 179.72440 * 15 14 13 37 37 H 1.09000 * 109.52141 * 303.05628 * 20 17 16 38 38 H 1.09004 * 109.52537 * 63.24688 * 20 17 16 39 39 H 1.08998 * 109.48079 * 297.62506 * 21 20 17 40 40 H 1.08999 * 109.49304 * 177.59504 * 21 20 17 41 41 H 1.09000 * 109.47770 * 301.17775 * 23 22 21 42 42 H 1.08997 * 109.49053 * 181.14767 * 23 22 21 43 43 H 1.09000 * 109.52227 * 182.48835 * 24 23 22 44 44 H 1.08989 * 109.52337 * 62.29615 * 24 23 22 45 45 H 1.08004 * 119.56527 * 179.76384 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3428 1.2307 -1.0960 7 6 4.1490 2.3895 -2.8781 8 7 5.3912 2.1832 -3.2576 9 14 3.0123 3.4339 -3.9300 10 1 3.1147 4.8544 -3.5093 11 1 3.4057 3.3106 -5.3566 12 1 1.6129 2.9671 -3.7602 13 6 2.2501 2.0364 1.2038 14 6 2.1169 1.3433 2.4028 15 6 2.3448 2.0092 3.5934 16 6 2.7096 3.3484 3.5445 17 6 2.9728 4.1124 4.8165 18 6 4.0772 3.4766 5.5533 19 7 4.9296 2.9859 6.1218 20 6 1.7101 4.1143 5.6837 21 6 1.9618 4.9581 6.9361 22 8 2.3366 6.2819 6.5495 23 6 3.5367 6.3462 5.7764 24 6 3.3482 5.5582 4.4775 25 6 2.8239 3.9736 2.3194 26 7 2.5953 3.3146 1.1992 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 5.7172 2.5736 -4.0835 35 1 1.8344 0.3009 2.4040 36 1 2.2446 1.4982 4.5396 37 1 0.8808 4.5397 5.1185 38 1 1.4671 3.0926 5.9757 39 1 2.7643 4.5094 7.5214 40 1 1.0528 4.9984 7.5362 41 1 4.3599 5.9157 6.3466 42 1 3.7624 7.3863 5.5411 43 1 4.2769 5.5690 3.9068 44 1 2.5520 6.0126 3.8880 45 1 3.1035 5.0160 2.2771 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:52 Heat of formation + Delta-G solvation = 8.066860 kcal Electronic energy + Delta-G solvation = -26333.922898 eV Core-core repulsion = 22736.957213 eV Total energy + Delta-G solvation = -3596.965685 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81538 -40.42186 -38.12712 -37.41001 -35.40424 -34.79860 -33.27258 -32.26100 -31.79520 -31.04484 -28.66914 -26.54045 -25.55054 -24.55065 -23.88419 -23.30372 -22.43884 -21.52978 -19.04112 -18.50874 -18.03570 -17.54255 -17.41710 -16.87981 -16.27534 -16.16136 -15.86869 -15.63182 -15.45391 -15.28485 -14.91689 -14.64794 -14.51165 -14.29979 -14.11496 -13.87438 -13.65467 -13.52149 -13.45921 -13.20143 -13.09187 -12.87111 -12.75083 -12.49646 -12.33042 -12.24930 -12.05244 -11.85549 -11.76515 -11.66791 -11.35681 -10.80040 -10.75624 -10.55582 -10.53228 -10.03576 -8.31629 -8.24478 -6.33734 0.43579 0.56647 1.36015 1.38874 1.47943 1.64352 1.68268 2.27788 2.34414 2.74393 2.96630 3.05432 3.15458 3.54217 3.61840 3.73423 3.77491 3.98429 4.03376 4.12622 4.25979 4.31143 4.38920 4.41397 4.48875 4.51637 4.62429 4.68332 4.77238 4.82951 4.83455 4.91415 4.98341 5.00148 5.05649 5.06799 5.09406 5.18565 5.19859 5.34363 5.39776 5.52319 5.75998 6.05615 6.23999 6.39349 6.45429 6.64486 6.70538 7.29242 7.47807 8.87583 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.003603 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.394199 B = 7769.008796 C = 8522.729918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.114 3.886 3 N -0.598 5.598 4 C 0.239 3.761 5 C -0.526 4.526 6 H 0.020 0.980 7 C 0.011 3.989 8 N -0.951 5.951 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.243 1.243 13 C 0.399 3.601 14 C -0.252 4.252 15 C -0.017 4.017 16 C -0.212 4.212 17 C 0.106 3.894 18 C 0.237 3.763 19 N -0.476 5.476 20 C -0.134 4.134 21 C 0.055 3.945 22 O -0.388 6.388 23 C 0.059 3.941 24 C -0.150 4.150 25 C 0.156 3.844 26 N -0.569 5.569 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.266 0.734 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.038 0.962 40 H 0.123 0.877 41 H 0.037 0.963 42 H 0.121 0.879 43 H 0.088 0.912 44 H 0.116 0.884 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.745 4.544 18.230 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.009 4.009 3 N -0.307 5.307 4 C 0.117 3.883 5 C -0.565 4.565 6 H 0.038 0.962 7 C -0.187 4.187 8 N -0.591 5.591 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.166 1.166 13 C 0.164 3.836 14 C -0.277 4.277 15 C -0.043 4.043 16 C -0.219 4.219 17 C 0.101 3.899 18 C -0.080 4.080 19 N -0.151 5.151 20 C -0.172 4.172 21 C -0.022 4.022 22 O -0.307 6.307 23 C -0.018 4.018 24 C -0.189 4.189 25 C -0.003 4.003 26 N -0.286 5.286 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.057 0.943 40 H 0.141 0.859 41 H 0.056 0.944 42 H 0.139 0.861 43 H 0.106 0.894 44 H 0.135 0.865 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.403 4.262 17.989 22.262 hybrid contribution 0.458 -0.408 -0.540 0.817 sum -11.946 3.854 17.448 21.494 Atomic orbital electron populations 1.22113 0.94186 1.03206 1.01898 1.21593 0.95301 0.81017 1.02950 1.46805 1.67267 1.13551 1.03065 1.19213 0.93776 0.93537 0.81819 1.21593 0.97193 1.31423 1.06320 0.96198 1.25831 0.96579 0.97355 0.98911 1.70070 1.17624 1.46946 1.24494 0.85690 0.80180 0.79422 0.77474 1.19341 1.20727 1.16603 1.18802 0.89298 0.88723 0.86811 1.21537 1.12994 1.02017 0.91148 1.21285 0.91854 0.93110 0.98020 1.19934 1.12303 0.95761 0.93920 1.17009 0.88816 0.93801 0.90234 1.29487 0.93802 0.92496 0.92263 1.81226 1.11741 1.10403 1.11765 1.22383 0.95259 1.03082 0.96499 1.22783 1.01408 0.82630 0.95359 1.87948 1.43063 1.27857 1.71848 1.22706 0.86459 1.02460 0.90157 1.22497 1.05119 0.91362 0.99909 1.22811 0.91483 1.00134 0.85869 1.67327 1.19944 1.08854 1.32498 0.89168 0.92274 0.93525 0.91533 0.89668 0.94943 0.94763 0.92486 0.83511 0.83116 0.87286 0.88614 0.94324 0.85878 0.94434 0.86088 0.89388 0.86532 0.80928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 10.24 71.98 0.74 -2.97 16 2 C 0.11 3.55 5.97 86.38 0.52 4.06 16 3 N -0.60 -24.01 2.57 -708.23 -1.82 -25.83 16 4 C 0.24 11.38 4.29 85.63 0.37 11.74 16 5 C -0.53 -30.64 9.94 25.60 0.25 -30.38 16 6 H 0.02 1.32 8.06 -2.91 -0.02 1.29 16 7 C 0.01 0.61 5.47 84.65 0.46 1.08 16 8 N -0.95 -60.13 13.96 21.45 0.30 -59.84 16 9 Si 0.95 43.92 27.47 68.60 1.88 45.80 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 13 C 0.40 15.04 7.37 133.06 0.98 16.03 16 14 C -0.25 -7.35 9.27 22.50 0.21 -7.14 16 15 C -0.02 -0.41 9.00 22.44 0.20 -0.21 16 16 C -0.21 -5.04 4.74 -19.76 -0.09 -5.13 16 17 C 0.11 1.92 0.57 -54.62 -0.03 1.89 16 18 C 0.24 5.59 11.36 89.44 1.02 6.61 16 19 N -0.48 -13.82 18.54 20.01 0.37 -13.45 16 20 C -0.13 -1.72 4.67 30.69 0.14 -1.58 16 21 C 0.05 0.72 6.61 72.01 0.48 1.19 16 22 O -0.39 -6.40 10.77 -148.98 -1.60 -8.00 16 23 C 0.06 0.87 6.61 72.01 0.48 1.35 16 24 C -0.15 -2.31 3.55 30.68 0.11 -2.20 16 25 C 0.16 4.57 10.16 84.62 0.86 5.43 16 26 N -0.57 -22.25 9.08 -193.27 -1.75 -24.01 16 27 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.07 2.25 8.07 -2.38 -0.02 2.23 16 31 H 0.09 2.29 5.98 -2.38 -0.01 2.28 16 32 H 0.03 1.48 7.13 -2.39 -0.02 1.46 16 33 H 0.03 1.68 6.73 -2.39 -0.02 1.67 16 34 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.15 3.61 6.03 -2.91 -0.02 3.60 16 36 H 0.15 2.71 7.71 -2.91 -0.02 2.68 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 1.01 7.60 -2.38 -0.02 0.99 16 39 H 0.04 0.58 7.39 -2.39 -0.02 0.57 16 40 H 0.12 1.07 8.14 -2.39 -0.02 1.06 16 41 H 0.04 0.64 7.39 -2.39 -0.02 0.62 16 42 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.09 1.40 7.73 -2.39 -0.02 1.39 16 44 H 0.12 1.48 7.34 -2.39 -0.02 1.46 16 45 H 0.17 4.06 5.90 -2.91 -0.02 4.04 16 Total: -1.00 -76.64 363.15 5.00 -71.64 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.94 Total: 13.92 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 6.68 Total: -0.24 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -2.91 Total: -123.12 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -1.60 Total: -8.00 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -76.64 5.00 -71.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.705 kcal (2) G-P(sol) polarization free energy of solvation -76.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds