Wall clock time and date at job start Tue Mar 31 2020 11:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47017 * 110.99644 * 2 1 4 4 C 1.53101 * 109.25342 * 182.38797 * 3 2 1 5 5 O 1.43008 * 109.26076 * 303.15211 * 4 3 2 6 6 C 1.43014 * 113.74255 * 58.67251 * 5 4 3 7 7 C 1.47016 * 110.99594 * 123.63350 * 2 1 3 8 8 H 1.09004 * 109.51035 * 297.58209 * 7 2 1 9 9 C 1.52994 * 109.50817 * 57.67583 * 7 2 1 10 10 N 1.46506 * 109.47292 * 54.11452 * 9 7 2 11 11 C 1.39400 * 120.00275 * 183.82261 * 10 9 7 12 12 C 1.38726 * 120.22634 * 355.98348 * 11 10 9 13 13 C 1.38458 * 120.15571 * 179.97438 * 12 11 10 14 14 C 1.37990 * 120.70217 * 0.02562 * 13 12 11 15 15 C 1.39162 * 120.13334 * 0.25320 * 14 13 12 16 16 N 1.38142 * 132.74660 * 179.75210 * 15 14 13 17 17 H 0.96994 * 124.69557 * 359.96167 * 16 15 14 18 18 C 1.35654 * 110.60362 * 179.97438 * 16 15 14 19 19 C 1.38975 * 109.24767 * 359.46332 * 18 16 15 20 20 C 1.40902 * 126.93361 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00255 * 202.96324 * 20 19 18 22 22 C 1.39677 * 120.00052 * 22.96380 * 20 19 18 23 23 N 1.31078 * 119.99938 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00122 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46988 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47215 * 119.99842 * 24 22 20 27 27 H 1.48497 * 109.47240 * 240.00344 * 24 22 20 28 28 C 1.39772 * 120.23038 * 175.99730 * 11 10 9 29 29 H 1.09004 * 109.47454 * 290.06878 * 1 2 3 30 30 H 1.09000 * 109.47368 * 50.07129 * 1 2 3 31 31 H 1.09004 * 109.47228 * 170.07255 * 1 2 3 32 32 H 1.08992 * 109.50907 * 302.32379 * 3 2 1 33 33 H 1.08998 * 109.50569 * 62.45651 * 3 2 1 34 34 H 1.09003 * 109.50419 * 63.09170 * 4 3 2 35 35 H 1.08996 * 109.50451 * 183.16835 * 4 3 2 36 36 H 1.08994 * 109.51434 * 181.39688 * 6 5 4 37 37 H 1.09003 * 109.50663 * 61.25935 * 6 5 4 38 38 H 1.08995 * 109.47101 * 294.11635 * 9 7 2 39 39 H 1.09006 * 109.47159 * 174.11445 * 9 7 2 40 40 H 0.97000 * 119.99657 * 3.82908 * 10 9 7 41 41 H 1.07996 * 119.92907 * 0.02562 * 12 11 10 42 42 H 1.07997 * 119.65176 * 180.02562 * 13 12 11 43 43 H 1.08004 * 119.93062 * 179.97438 * 14 13 12 44 44 H 1.08001 * 125.37472 * 180.02562 * 18 16 15 45 45 H 0.97002 * 120.00455 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3264 -0.0602 5 8 4.0174 0.5575 1.0404 6 6 3.5249 -0.7849 1.0711 7 6 1.9958 -0.7602 1.1428 8 1 1.6820 -0.2847 2.0721 9 6 1.4589 -2.1921 1.0950 10 7 1.7620 -2.7840 -0.2105 11 6 1.2997 -4.0620 -0.5206 12 6 0.6239 -4.8105 0.4321 13 6 0.1649 -6.0795 0.1222 14 6 0.3716 -6.6168 -1.1318 15 6 1.0521 -5.8864 -2.1013 16 7 1.4022 -6.1618 -3.4090 17 1 1.1984 -6.9890 -3.8726 18 6 2.0707 -5.1151 -3.9547 19 6 2.1736 -4.0969 -3.0146 20 6 2.7955 -2.8444 -3.1876 21 1 3.1435 -2.2909 -2.3280 22 6 2.9619 -2.3186 -4.4709 23 7 2.5400 -2.9906 -5.5143 24 14 3.7858 -0.6579 -4.7003 25 1 4.1685 -0.1079 -3.3750 26 1 5.0010 -0.8197 -5.5382 27 1 2.8432 0.2740 -5.3699 28 6 1.5140 -4.5982 -1.7935 29 1 -0.3634 0.3526 0.9653 30 1 -0.3634 0.6596 -0.7880 31 1 -0.3634 -1.0123 -0.1772 32 1 1.6133 1.9092 -0.8681 33 1 1.6826 1.8826 0.9110 34 1 3.8385 0.8644 -0.9964 35 1 3.9221 2.3399 -0.0037 36 1 3.9220 -1.2984 1.9466 37 1 3.8385 -1.3083 0.1678 38 1 0.3797 -2.1807 1.2470 39 1 1.9302 -2.7833 1.8802 40 1 2.2845 -2.2866 -0.8589 41 1 0.4547 -4.4022 1.4174 42 1 -0.3606 -6.6549 0.8700 43 1 0.0086 -7.6081 -1.3599 44 1 2.4537 -5.0755 -4.9638 45 1 2.6552 -2.6254 -6.4055 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169656931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:21 Heat of formation + Delta-G solvation = 21.695233 kcal Electronic energy + Delta-G solvation = -27411.005015 eV Core-core repulsion = 23814.630301 eV Total energy + Delta-G solvation = -3596.374715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.92332 -39.45595 -36.73559 -35.64721 -34.28470 -33.21829 -31.58877 -29.65788 -28.75686 -27.80350 -27.33335 -25.77216 -24.38302 -24.08938 -22.69381 -21.08723 -20.59486 -19.45013 -19.31215 -17.51179 -16.40398 -16.28892 -15.76702 -15.46950 -15.28958 -15.02274 -14.90896 -14.53247 -14.26221 -13.82071 -13.67386 -13.57550 -13.24605 -12.80574 -12.49971 -12.43955 -12.33953 -12.10772 -11.78833 -11.35821 -11.33058 -11.21168 -11.11985 -10.96221 -10.72572 -10.64493 -10.47833 -10.36925 -9.72366 -9.69325 -9.57512 -9.24632 -8.95979 -8.29651 -7.31460 -6.92453 -6.41759 -5.93518 -3.91843 2.54521 2.83070 3.12624 3.20569 3.24482 3.74863 3.89066 4.13976 4.28852 4.33280 4.69497 4.80417 4.87715 4.94606 5.01930 5.18076 5.26498 5.31585 5.52522 5.60344 5.61193 5.62951 5.75705 5.83979 5.84326 5.87271 5.92234 6.04360 6.12174 6.14670 6.23267 6.56859 6.73088 6.92864 6.98157 7.02164 7.15620 7.21434 7.27948 7.34169 7.58800 7.59861 7.89404 8.01564 8.33177 8.49749 8.74925 8.83654 9.11277 9.22020 9.31077 10.60600 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010075 B = 0.006735 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.595779 B = 4156.146911 C = 6293.128353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.527 5.527 3 C 0.020 3.980 4 C 0.058 3.942 5 O -0.386 6.386 6 C 0.066 3.934 7 C 0.040 3.960 8 H 0.057 0.943 9 C 0.137 3.863 10 N -0.732 5.732 11 C 0.278 3.722 12 C -0.280 4.280 13 C -0.067 4.067 14 C -0.211 4.211 15 C 0.119 3.881 16 N -0.588 5.588 17 H 0.392 0.608 18 C -0.091 4.091 19 C 0.038 3.962 20 C -0.423 4.423 21 H 0.066 0.934 22 C 0.064 3.936 23 N -0.835 5.835 24 Si 0.905 3.095 25 H -0.264 1.264 26 H -0.281 1.281 27 H -0.280 1.280 28 C -0.185 4.185 29 H 0.021 0.979 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.415 0.585 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.170 0.830 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 4.940 9.854 11.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.252 5.252 3 C -0.108 4.108 4 C -0.019 4.019 5 O -0.305 6.305 6 C -0.011 4.011 7 C -0.069 4.069 8 H 0.075 0.925 9 C 0.010 3.990 10 N -0.366 5.366 11 C 0.173 3.827 12 C -0.306 4.306 13 C -0.087 4.087 14 C -0.234 4.234 15 C 0.006 3.994 16 N -0.189 5.189 17 H 0.225 0.775 18 C -0.215 4.215 19 C 0.032 3.968 20 C -0.457 4.457 21 H 0.084 0.916 22 C -0.146 4.146 23 N -0.466 5.466 24 Si 0.732 3.268 25 H -0.188 1.188 26 H -0.207 1.207 27 H -0.206 1.206 28 C -0.195 4.195 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.256 0.744 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.187 0.813 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.509 4.885 9.352 10.658 hybrid contribution -0.273 0.915 -0.198 0.976 sum -1.782 5.800 9.154 10.982 Atomic orbital electron populations 1.22401 0.86527 1.03557 0.99602 1.62086 1.08554 1.12787 1.41808 1.22790 0.96537 0.90078 1.01378 1.22718 0.92290 0.96292 0.90598 1.87938 1.70077 1.24024 1.48442 1.22754 0.91364 0.83747 1.03277 1.22597 0.96674 0.94953 0.92712 0.92481 1.21144 0.99443 0.90685 0.87679 1.44768 1.60257 1.15383 1.16241 1.17189 0.90592 0.83888 0.90994 1.19920 1.14545 0.97487 0.98638 1.20088 0.99077 0.94746 0.94815 1.19521 1.10111 0.99892 0.93874 1.17908 1.00617 0.95311 0.85599 1.41439 1.50990 1.16712 1.09724 0.77458 1.22507 1.10520 0.87117 1.01354 1.17880 0.97288 0.93154 0.88445 1.18495 1.33758 1.01407 0.92042 0.91590 1.25552 0.94834 0.98464 0.95783 1.69726 1.40118 1.37754 0.98970 0.86299 0.79031 0.82602 0.78879 1.18772 1.20662 1.20589 1.18982 1.09920 0.96156 0.94476 0.96010 0.91400 0.90169 0.89569 0.94345 0.91639 0.88679 0.88357 0.91346 0.92468 0.92430 0.74358 0.88193 0.88063 0.88776 0.81278 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.01 60.06 0.54 0.90 16 2 N -0.53 -7.63 4.25 -234.57 -1.00 -8.63 16 3 C 0.02 0.26 5.65 -3.71 -0.02 0.24 16 4 C 0.06 0.77 7.01 37.21 0.26 1.03 16 5 O -0.39 -5.65 10.83 -35.23 -0.38 -6.03 16 6 C 0.07 0.93 6.20 37.21 0.23 1.16 16 7 C 0.04 0.54 2.23 -67.60 -0.15 0.39 16 8 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 9 C 0.14 2.00 3.90 -4.04 -0.02 1.98 16 10 N -0.73 -13.84 5.28 -58.52 -0.31 -14.15 16 11 C 0.28 5.97 6.67 -83.66 -0.56 5.41 16 12 C -0.28 -5.39 9.31 -39.32 -0.37 -5.75 16 13 C -0.07 -1.25 10.00 -39.59 -0.40 -1.65 16 14 C -0.21 -4.22 10.07 -39.33 -0.40 -4.61 16 15 C 0.12 2.72 7.23 -83.91 -0.61 2.11 16 16 N -0.59 -13.07 5.99 -9.80 -0.06 -13.13 16 17 H 0.39 7.21 8.96 -40.82 -0.37 6.85 16 18 C -0.09 -2.32 10.77 -15.59 -0.17 -2.49 16 19 C 0.04 1.00 5.97 -104.81 -0.63 0.37 16 20 C -0.42 -11.15 8.80 -38.04 -0.33 -11.48 16 21 H 0.07 1.68 5.67 -52.49 -0.30 1.38 16 22 C 0.06 1.64 5.47 -17.34 -0.09 1.55 16 23 N -0.83 -22.01 10.85 55.54 0.60 -21.41 16 24 Si 0.91 19.55 29.56 -169.99 -5.02 14.52 16 25 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 C -0.19 -4.54 6.27 -104.76 -0.66 -5.19 16 29 H 0.02 0.25 8.12 -51.93 -0.42 -0.17 16 30 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 31 H 0.08 1.20 6.77 -51.93 -0.35 0.85 16 32 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.12 7.08 -51.93 -0.37 0.75 16 38 H 0.06 0.82 6.64 -51.93 -0.34 0.47 16 39 H 0.06 0.78 7.98 -51.93 -0.41 0.36 16 40 H 0.41 8.61 4.30 -40.82 -0.18 8.43 16 41 H 0.10 1.67 6.75 -52.49 -0.35 1.32 16 42 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 44 H 0.17 4.44 6.42 -52.49 -0.34 4.10 16 45 H 0.27 6.62 8.30 -40.82 -0.34 6.28 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -29.11 352.58 -10.57 -39.68 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -6.36 Total: 19.89 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -3.36 Total: -16.05 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.76 Total: -57.32 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.38 Total: -6.03 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.11 -10.57 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169656931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.376 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds