Wall clock time and date at job start Tue Mar 31 2020 11:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35881 * 116.99676 * 2 1 4 4 C 1.38854 * 119.91499 * 179.97438 * 3 2 1 5 5 C 1.37860 * 120.08061 * 180.02562 * 4 3 2 6 6 C 1.39541 * 119.92175 * 359.97249 * 5 4 3 7 7 C 1.47946 * 120.08307 * 180.02562 * 6 5 4 8 8 C 1.36651 * 126.33941 * 124.91172 * 7 6 5 9 9 C 1.50698 * 126.07396 * 359.93934 * 8 7 6 10 10 N 1.46903 * 109.47225 * 283.11638 * 9 8 7 11 11 C 1.46895 * 111.00113 * 288.57635 * 10 9 8 12 12 C 1.46901 * 111.00250 * 164.61532 * 10 9 8 13 13 C 1.50696 * 109.47434 * 190.00317 * 12 10 9 14 14 H 1.08004 * 119.99869 * 0.02562 * 13 12 10 15 15 C 1.37879 * 120.00086 * 180.02562 * 13 12 10 16 16 N 1.31509 * 119.99812 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99808 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47158 * 59.99384 * 17 15 13 19 19 H 1.48502 * 109.46693 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46905 * 299.99027 * 17 15 13 21 21 C 1.39507 * 107.84676 * 179.97438 * 8 7 6 22 22 N 1.30885 * 108.59352 * 359.97438 * 21 8 7 23 23 N 1.36297 * 126.34458 * 304.87803 * 7 6 5 24 24 C 1.46502 * 126.13390 * 0.02562 * 23 7 6 25 25 C 1.39543 * 119.83191 * 0.28305 * 6 5 4 26 26 C 1.37868 * 119.91441 * 359.43963 * 25 6 5 27 27 H 1.08998 * 109.47889 * 300.00364 * 1 2 3 28 28 H 1.09003 * 109.46883 * 60.00519 * 1 2 3 29 29 H 1.09004 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.95614 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.04386 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.47542 * 43.11493 * 9 8 7 33 33 H 1.09002 * 109.46832 * 163.12048 * 9 8 7 34 34 H 1.08995 * 109.47598 * 58.23012 * 11 10 9 35 35 H 1.09007 * 109.47157 * 178.23323 * 11 10 9 36 36 H 1.09002 * 109.47170 * 298.23011 * 11 10 9 37 37 H 1.08994 * 109.46962 * 310.00817 * 12 10 9 38 38 H 1.09009 * 109.46778 * 70.00319 * 12 10 9 39 39 H 0.97006 * 120.00243 * 180.02562 * 16 15 13 40 40 H 1.07999 * 125.69811 * 180.02562 * 21 8 7 41 41 H 1.09000 * 109.46744 * 269.99641 * 24 23 7 42 42 H 1.08998 * 109.47099 * 29.99667 * 24 23 7 43 43 H 1.08996 * 109.46572 * 149.99409 * 24 23 7 44 44 H 1.08000 * 120.03821 * 179.71809 * 25 6 5 45 45 H 1.08007 * 119.95508 * 180.27620 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 3.4326 1.2814 0.0005 5 6 4.0619 2.5080 0.0011 6 6 3.3037 3.6794 0.0005 7 6 3.9753 4.9976 0.0005 8 6 3.7821 6.0049 -0.9025 9 6 2.8442 5.9717 -2.0816 10 7 3.4388 5.1677 -3.1578 11 6 4.5710 5.8705 -3.7759 12 6 2.4309 4.8064 -4.1635 13 6 3.0099 3.7886 -5.1120 14 1 4.0251 3.4442 -4.9806 15 6 2.2437 3.2970 -6.1475 16 7 1.0075 3.7161 -6.3072 17 14 2.9614 2.0348 -7.3228 18 1 3.3596 0.8221 -6.5640 19 1 1.9424 1.6697 -8.3395 20 1 4.1523 2.6090 -7.9990 21 6 4.6078 7.0691 -0.5391 22 7 5.2751 6.7316 0.5350 23 7 4.9010 5.4325 0.9014 24 6 5.4125 4.6769 2.0476 25 6 1.9103 3.6043 0.0054 26 6 1.2879 2.3741 -0.0010 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 4.0188 0.3744 0.0014 31 1 5.1406 2.5623 0.0011 32 1 1.8954 5.5287 -1.7790 33 1 2.6736 6.9873 -2.4388 34 1 5.3201 6.0919 -3.0157 35 1 5.0122 5.2400 -4.5480 36 1 4.2209 6.8010 -4.2228 37 1 1.5571 4.3846 -3.6669 38 1 2.1379 5.6966 -4.7203 39 1 0.4682 3.3700 -7.0355 40 1 4.6830 8.0137 -1.0572 41 1 4.7879 4.8720 2.9193 42 1 5.3934 3.6115 1.8181 43 1 6.4366 4.9849 2.2580 44 1 1.3201 4.5088 0.0095 45 1 0.2095 2.3153 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232106877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:46 Heat of formation + Delta-G solvation = 76.244541 kcal Electronic energy + Delta-G solvation = -26598.013284 eV Core-core repulsion = 23004.004005 eV Total energy + Delta-G solvation = -3594.009279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.04988 -39.82453 -37.25534 -36.38752 -33.24163 -32.47568 -31.62314 -30.89409 -29.04307 -27.75177 -26.90975 -26.77338 -25.62319 -23.46334 -22.52054 -22.28439 -20.52338 -20.33792 -19.21406 -18.05095 -16.81803 -16.20427 -16.05928 -15.67357 -15.23151 -15.03732 -14.75500 -14.35418 -14.12582 -13.83749 -13.73495 -13.55795 -13.44778 -13.20261 -12.73479 -12.60837 -12.44309 -12.05127 -11.96365 -11.79968 -11.65073 -11.28604 -11.04574 -10.96287 -10.80841 -10.77072 -10.65535 -10.38318 -10.27280 -9.73091 -9.17653 -9.14184 -8.87082 -8.37759 -8.27483 -7.69800 -7.06832 -5.96422 -3.96434 1.26641 1.49952 2.16989 2.68094 3.05104 3.31673 3.37091 3.40356 3.44352 3.89648 4.48755 4.62520 4.73319 4.87849 4.96413 5.10160 5.14757 5.19329 5.25151 5.28756 5.36847 5.39662 5.41506 5.46619 5.55049 5.69703 5.77600 5.80756 6.03920 6.13952 6.23381 6.27171 6.37620 6.42574 6.44356 6.56048 6.69281 6.80321 6.86279 6.91723 7.20773 7.38521 7.44204 7.44948 7.88590 7.92091 8.18907 8.33793 8.66740 9.11185 9.67163 11.14382 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.008790 B = 0.005649 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3184.704474 B = 4955.090963 C = 7237.581904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.319 6.319 3 C 0.135 3.865 4 C -0.147 4.147 5 C -0.059 4.059 6 C -0.050 4.050 7 C 0.142 3.858 8 C -0.197 4.197 9 C 0.129 3.871 10 N -0.531 5.531 11 C 0.043 3.957 12 C 0.195 3.805 13 C -0.500 4.500 14 H 0.061 0.939 15 C 0.056 3.944 16 N -0.901 5.901 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.051 3.949 22 N -0.302 5.302 23 N -0.377 5.377 24 C 0.103 3.897 25 C -0.045 4.045 26 C -0.200 4.200 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.070 0.930 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.008 0.992 37 H 0.027 0.973 38 H -0.012 1.012 39 H 0.260 0.740 40 H 0.178 0.822 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.126 0.874 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.894 -1.646 17.423 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.089 3.911 4 C -0.166 4.166 5 C -0.078 4.078 6 C -0.053 4.053 7 C 0.016 3.984 8 C -0.208 4.208 9 C -0.001 4.001 10 N -0.256 5.256 11 C -0.106 4.106 12 C 0.070 3.930 13 C -0.539 4.539 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.541 5.541 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.135 4.135 22 N -0.123 5.123 23 N -0.161 5.161 24 C -0.039 4.039 25 C -0.064 4.064 26 C -0.219 4.219 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.149 0.851 31 H 0.143 0.857 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.027 0.973 37 H 0.045 0.955 38 H 0.006 0.994 39 H 0.070 0.930 40 H 0.195 0.805 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.144 0.856 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.922 -1.989 18.499 18.834 hybrid contribution -0.805 -0.027 -1.849 2.017 sum 2.117 -2.015 16.651 16.905 Atomic orbital electron populations 1.23065 0.78403 1.03791 1.01615 1.86041 1.21440 1.27105 1.88593 1.19076 0.92305 0.84070 0.95629 1.20220 0.91318 0.98280 1.06792 1.20857 0.99312 0.90691 0.96943 1.17698 0.92613 0.89333 1.05607 1.19202 0.93403 0.94033 0.91798 1.20099 1.06352 0.93687 1.00652 1.20321 0.94573 0.95816 0.89343 1.62072 1.10591 1.40508 1.12394 1.22150 0.94189 0.96142 0.98141 1.19698 0.89866 0.94871 0.88528 1.21123 0.99457 1.22906 1.10434 0.92083 1.24950 0.94882 0.96909 0.97770 1.69947 1.08026 1.44151 1.31936 0.86624 0.78631 0.81976 0.80570 1.20230 1.21423 1.20331 1.23603 0.95479 0.99793 0.94582 1.77230 1.23848 0.94019 1.17179 1.48659 1.32888 1.11813 1.22696 1.21799 1.00506 0.95577 0.85969 1.20851 0.93002 0.97212 0.95306 1.21092 1.00061 0.92006 1.08725 0.92802 0.92114 0.88431 0.85139 0.85692 0.91195 0.95209 0.93823 0.91228 0.97305 0.95458 0.99378 0.93039 0.80482 0.91198 0.89620 0.89598 0.85571 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.36 10.49 -19.37 -0.20 -4.56 16 3 C 0.13 1.96 6.69 -39.13 -0.26 1.70 16 4 C -0.15 -2.08 9.97 -39.49 -0.39 -2.47 16 5 C -0.06 -0.84 8.50 -39.23 -0.33 -1.18 16 6 C -0.05 -0.77 5.27 -104.95 -0.55 -1.32 16 7 C 0.14 2.26 6.35 -82.48 -0.52 1.73 16 8 C -0.20 -3.31 4.84 -104.72 -0.51 -3.82 16 9 C 0.13 2.40 5.11 -4.98 -0.03 2.37 16 10 N -0.53 -11.71 4.70 -245.82 -1.16 -12.87 16 11 C 0.04 0.87 9.20 60.06 0.55 1.42 16 12 C 0.20 5.13 4.72 -4.98 -0.02 5.11 16 13 C -0.50 -14.23 8.48 -34.44 -0.29 -14.53 16 14 H 0.06 1.74 7.11 -52.48 -0.37 1.37 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 17 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 C 0.05 0.78 11.50 -17.48 -0.20 0.58 16 22 N -0.30 -4.78 12.56 30.56 0.38 -4.40 16 23 N -0.38 -5.48 4.06 -64.16 -0.26 -5.74 16 24 C 0.10 1.04 11.29 59.85 0.68 1.71 16 25 C -0.04 -0.66 8.81 -39.23 -0.35 -1.00 16 26 C -0.20 -2.81 9.02 -39.49 -0.36 -3.16 16 27 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 28 H 0.06 0.63 7.65 -51.93 -0.40 0.24 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.13 1.59 7.48 -52.49 -0.39 1.20 16 32 H 0.07 1.30 6.24 -51.93 -0.32 0.98 16 33 H 0.03 0.53 8.05 -51.93 -0.42 0.12 16 34 H 0.04 0.81 7.08 -51.93 -0.37 0.44 16 35 H 0.07 1.53 6.80 -51.92 -0.35 1.17 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.03 0.76 7.87 -51.93 -0.41 0.35 16 38 H -0.01 -0.33 8.12 -51.92 -0.42 -0.75 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.18 2.29 8.06 -52.49 -0.42 1.87 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.75 6.08 -51.93 -0.32 0.44 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.13 1.73 7.38 -52.49 -0.39 1.34 16 45 H 0.13 1.53 6.28 -52.48 -0.33 1.20 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -33.53 371.76 -8.17 -41.70 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.56 Total: -0.47 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -1.69 Total: -10.10 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.30 Total: -49.14 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.20 Total: -4.56 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.53 -8.17 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232106877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.941 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds