Wall clock time and date at job start Tue Mar 31 2020 11:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35881 * 116.99676 * 2 1 4 4 C 1.38854 * 119.91499 * 179.97438 * 3 2 1 5 5 C 1.37860 * 120.08061 * 180.02562 * 4 3 2 6 6 C 1.39541 * 119.92175 * 359.97249 * 5 4 3 7 7 C 1.47946 * 120.08307 * 180.02562 * 6 5 4 8 8 C 1.36651 * 126.33941 * 124.91172 * 7 6 5 9 9 C 1.50698 * 126.07396 * 359.93934 * 8 7 6 10 10 N 1.46903 * 109.47225 * 283.11638 * 9 8 7 11 11 C 1.46895 * 111.00113 * 288.57635 * 10 9 8 12 12 C 1.46901 * 111.00250 * 164.61532 * 10 9 8 13 13 C 1.50696 * 109.47434 * 190.00317 * 12 10 9 14 14 H 1.08004 * 119.99869 * 0.02562 * 13 12 10 15 15 C 1.37879 * 120.00086 * 180.02562 * 13 12 10 16 16 N 1.31509 * 119.99812 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99808 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47158 * 59.99384 * 17 15 13 19 19 H 1.48502 * 109.46693 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46905 * 299.99027 * 17 15 13 21 21 C 1.39507 * 107.84676 * 179.97438 * 8 7 6 22 22 N 1.30885 * 108.59352 * 359.97438 * 21 8 7 23 23 N 1.36297 * 126.34458 * 304.87803 * 7 6 5 24 24 C 1.46502 * 126.13390 * 0.02562 * 23 7 6 25 25 C 1.39543 * 119.83191 * 0.28305 * 6 5 4 26 26 C 1.37868 * 119.91441 * 359.43963 * 25 6 5 27 27 H 1.08998 * 109.47889 * 300.00364 * 1 2 3 28 28 H 1.09003 * 109.46883 * 60.00519 * 1 2 3 29 29 H 1.09004 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.95614 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.04386 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.47542 * 43.11493 * 9 8 7 33 33 H 1.09002 * 109.46832 * 163.12048 * 9 8 7 34 34 H 1.08995 * 109.47598 * 58.23012 * 11 10 9 35 35 H 1.09007 * 109.47157 * 178.23323 * 11 10 9 36 36 H 1.09002 * 109.47170 * 298.23011 * 11 10 9 37 37 H 1.08994 * 109.46962 * 310.00817 * 12 10 9 38 38 H 1.09009 * 109.46778 * 70.00319 * 12 10 9 39 39 H 0.97006 * 120.00243 * 180.02562 * 16 15 13 40 40 H 1.07999 * 125.69811 * 180.02562 * 21 8 7 41 41 H 1.09000 * 109.46744 * 269.99641 * 24 23 7 42 42 H 1.08998 * 109.47099 * 29.99667 * 24 23 7 43 43 H 1.08996 * 109.46572 * 149.99409 * 24 23 7 44 44 H 1.08000 * 120.03821 * 179.71809 * 25 6 5 45 45 H 1.08007 * 119.95508 * 180.27620 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 3.4326 1.2814 0.0005 5 6 4.0619 2.5080 0.0011 6 6 3.3037 3.6794 0.0005 7 6 3.9753 4.9976 0.0005 8 6 3.7821 6.0049 -0.9025 9 6 2.8442 5.9717 -2.0816 10 7 3.4388 5.1677 -3.1578 11 6 4.5710 5.8705 -3.7759 12 6 2.4309 4.8064 -4.1635 13 6 3.0099 3.7886 -5.1120 14 1 4.0251 3.4442 -4.9806 15 6 2.2437 3.2970 -6.1475 16 7 1.0075 3.7161 -6.3072 17 14 2.9614 2.0348 -7.3228 18 1 3.3596 0.8221 -6.5640 19 1 1.9424 1.6697 -8.3395 20 1 4.1523 2.6090 -7.9990 21 6 4.6078 7.0691 -0.5391 22 7 5.2751 6.7316 0.5350 23 7 4.9010 5.4325 0.9014 24 6 5.4125 4.6769 2.0476 25 6 1.9103 3.6043 0.0054 26 6 1.2879 2.3741 -0.0010 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 4.0188 0.3744 0.0014 31 1 5.1406 2.5623 0.0011 32 1 1.8954 5.5287 -1.7790 33 1 2.6736 6.9873 -2.4388 34 1 5.3201 6.0919 -3.0157 35 1 5.0122 5.2400 -4.5480 36 1 4.2209 6.8010 -4.2228 37 1 1.5571 4.3846 -3.6669 38 1 2.1379 5.6966 -4.7203 39 1 0.4682 3.3700 -7.0355 40 1 4.6830 8.0137 -1.0572 41 1 4.7879 4.8720 2.9193 42 1 5.3934 3.6115 1.8181 43 1 6.4366 4.9849 2.2580 44 1 1.3201 4.5088 0.0095 45 1 0.2095 2.3153 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232106877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:45 Heat of formation + Delta-G solvation = 55.119028 kcal Electronic energy + Delta-G solvation = -26598.929355 eV Core-core repulsion = 23004.004005 eV Total energy + Delta-G solvation = -3594.925350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.22413 -40.86856 -38.31465 -38.11619 -34.82681 -34.07328 -32.87634 -31.99904 -30.35737 -29.14075 -28.46686 -27.80478 -27.10020 -25.15006 -23.74040 -23.37772 -22.19740 -21.56433 -20.46253 -19.08499 -18.48560 -17.79415 -17.16861 -16.73359 -16.62223 -16.34557 -16.19407 -15.73909 -15.58067 -15.32155 -15.10736 -14.75092 -14.63763 -14.27865 -14.06564 -13.73329 -13.58559 -13.51239 -13.37543 -13.02710 -12.97914 -12.78957 -12.73702 -12.54056 -12.42801 -12.24583 -12.04844 -11.88475 -11.79713 -11.46533 -11.20970 -10.57086 -10.28254 -9.96740 -9.45294 -8.93364 -8.80374 -8.15574 -6.24385 0.13222 0.40109 1.00688 1.41062 1.43883 1.51406 1.64233 1.80232 2.37670 2.43051 2.78444 3.16522 3.57875 3.59515 3.64268 3.84597 3.93309 4.25320 4.31422 4.35008 4.38863 4.40997 4.41723 4.46675 4.52521 4.62565 4.64320 4.68475 4.74287 4.78024 4.79389 4.90709 5.04911 5.10813 5.15717 5.24627 5.30835 5.33853 5.38310 5.55184 5.67942 5.72017 5.73128 6.10254 6.12091 6.42966 6.43763 6.72759 6.76057 6.91640 7.44535 8.94700 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.008790 B = 0.005649 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3184.704474 B = 4955.090963 C = 7237.581904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.125 3.875 4 C -0.156 4.156 5 C -0.061 4.061 6 C -0.066 4.066 7 C 0.144 3.856 8 C -0.220 4.220 9 C 0.135 3.865 10 N -0.536 5.536 11 C 0.050 3.950 12 C 0.214 3.786 13 C -0.517 4.517 14 H 0.057 0.943 15 C 0.006 3.994 16 N -0.933 5.933 17 Si 0.961 3.039 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.269 1.269 21 C 0.051 3.949 22 N -0.315 5.315 23 N -0.373 5.373 24 C 0.093 3.907 25 C -0.056 4.056 26 C -0.207 4.207 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.122 0.878 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.063 0.937 33 H 0.036 0.964 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.012 0.988 37 H 0.003 0.997 38 H -0.039 1.039 39 H 0.263 0.737 40 H 0.199 0.801 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.129 0.871 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.887 -2.528 18.191 18.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.079 3.921 4 C -0.174 4.174 5 C -0.080 4.080 6 C -0.068 4.068 7 C 0.016 3.984 8 C -0.231 4.231 9 C 0.007 3.993 10 N -0.260 5.260 11 C -0.099 4.099 12 C 0.088 3.912 13 C -0.555 4.555 14 H 0.075 0.925 15 C -0.192 4.192 16 N -0.573 5.573 17 Si 0.786 3.214 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.194 1.194 21 C -0.134 4.134 22 N -0.136 5.136 23 N -0.156 5.156 24 C -0.047 4.047 25 C -0.076 4.076 26 C -0.225 4.225 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.140 0.860 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.021 0.979 38 H -0.022 1.022 39 H 0.072 0.928 40 H 0.215 0.785 41 H 0.104 0.896 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.147 0.853 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.935 -2.863 19.304 19.908 hybrid contribution -1.157 0.221 -1.991 2.314 sum 2.778 -2.642 17.312 17.732 Atomic orbital electron populations 1.23340 0.76617 1.05620 1.02073 1.86024 1.23354 1.26730 1.88439 1.19297 0.92786 0.84536 0.95494 1.20489 0.91553 0.98901 1.06470 1.21022 1.00005 0.90402 0.96559 1.17815 0.92906 0.89485 1.06567 1.19309 0.93304 0.93987 0.91751 1.19931 1.07411 0.95063 1.00707 1.20229 0.94799 0.95342 0.88956 1.61997 1.09946 1.42302 1.11794 1.22074 0.93943 0.95586 0.98248 1.19319 0.90012 0.93219 0.88697 1.21390 0.99390 1.23510 1.11235 0.92472 1.25794 0.95170 0.98817 0.99418 1.70068 1.09267 1.45338 1.32656 0.85571 0.78160 0.79343 0.78372 1.19664 1.20707 1.19372 1.23889 0.94770 1.00248 0.94499 1.77199 1.24262 0.94792 1.17393 1.48980 1.32092 1.11510 1.23057 1.22166 1.01574 0.95893 0.85102 1.20996 0.93190 0.97710 0.95655 1.21313 1.01079 0.91726 1.08418 0.90984 0.92974 0.86024 0.83571 0.84323 0.91899 0.94628 0.91652 0.93027 0.96964 0.97917 1.02154 0.92809 0.78478 0.89578 0.88360 0.88088 0.85333 0.83599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -8.74 10.49 -92.21 -0.97 -9.71 16 3 C 0.12 3.54 6.69 22.56 0.15 3.69 16 4 C -0.16 -4.23 9.97 22.33 0.22 -4.00 16 5 C -0.06 -1.68 8.50 22.49 0.19 -1.49 16 6 C -0.07 -1.96 5.27 -20.08 -0.11 -2.07 16 7 C 0.14 4.46 6.35 40.65 0.26 4.72 16 8 C -0.22 -7.24 4.84 -19.93 -0.10 -7.34 16 9 C 0.14 5.08 5.11 85.56 0.44 5.52 16 10 N -0.54 -23.86 4.70 -931.65 -4.38 -28.24 16 11 C 0.05 2.04 9.20 127.69 1.17 3.21 16 12 C 0.21 11.55 4.72 85.56 0.40 11.96 16 13 C -0.52 -29.78 8.48 25.60 0.22 -29.56 16 14 H 0.06 3.28 7.11 -2.91 -0.02 3.26 16 15 C 0.01 0.34 5.46 84.66 0.46 0.80 16 16 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 17 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 C 0.05 1.50 11.50 85.14 0.98 2.48 16 22 N -0.31 -9.46 12.56 -57.24 -0.72 -10.18 16 23 N -0.37 -10.23 4.06 -356.91 -1.45 -11.68 16 24 C 0.09 1.65 11.29 127.77 1.44 3.10 16 25 C -0.06 -1.66 8.81 22.50 0.20 -1.47 16 26 C -0.21 -5.73 9.02 22.33 0.20 -5.53 16 27 H 0.07 1.06 7.66 -2.39 -0.02 1.04 16 28 H 0.05 1.05 7.65 -2.39 -0.02 1.03 16 29 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 31 H 0.14 3.30 7.48 -2.91 -0.02 3.28 16 32 H 0.06 2.41 6.24 -2.39 -0.01 2.39 16 33 H 0.04 1.28 8.05 -2.39 -0.02 1.26 16 34 H 0.06 2.36 7.08 -2.39 -0.02 2.35 16 35 H 0.05 2.26 6.80 -2.38 -0.02 2.25 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 37 H 0.00 0.16 7.87 -2.39 -0.02 0.14 16 38 H -0.04 -2.29 8.12 -2.38 -0.02 -2.31 16 39 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 40 H 0.20 4.76 8.06 -2.91 -0.02 4.73 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.10 1.51 6.08 -2.39 -0.01 1.50 16 43 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.13 3.60 7.38 -2.91 -0.02 3.58 16 45 H 0.15 3.39 6.28 -2.91 -0.02 3.37 16 Total: -1.00 -71.41 371.76 3.03 -68.38 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.99 Total: 15.03 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 7.25 Total: -14.56 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -6.26 Total: -106.12 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.97 Total: -9.71 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.41 3.03 -68.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232106877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.498 kcal (2) G-P(sol) polarization free energy of solvation -71.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds