Wall clock time and date at job start Tue Mar 31 2020 10:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47439 * 2 1 4 4 C 1.46501 * 120.00121 * 269.99932 * 3 2 1 5 5 C 1.52998 * 109.47083 * 270.00094 * 4 3 2 6 6 C 1.39605 * 119.99785 * 90.00054 * 3 2 1 7 7 C 1.39000 * 119.95426 * 180.02562 * 6 3 2 8 8 C 1.37880 * 120.04770 * 180.02562 * 7 6 3 9 9 C 1.39380 * 119.95144 * 359.97165 * 8 7 6 10 10 C 1.48397 * 120.04111 * 179.97438 * 9 8 7 11 11 C 1.40800 * 125.94198 * 180.02562 * 10 9 8 12 12 C 1.35723 * 107.79836 * 180.02562 * 11 10 9 13 13 O 1.35756 * 126.12217 * 180.02562 * 12 11 10 14 14 N 1.35755 * 107.75710 * 359.97438 * 12 11 10 15 15 C 1.46506 * 125.97351 * 179.73626 * 14 12 11 16 16 C 1.50693 * 109.47284 * 90.00102 * 15 14 12 17 17 H 1.08004 * 120.00146 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99992 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00345 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99972 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47205 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47147 * 119.99673 * 20 18 16 23 23 H 1.48502 * 109.47255 * 239.99497 * 20 18 16 24 24 N 1.31600 * 125.94861 * 359.97438 * 10 9 8 25 25 C 1.39373 * 119.91254 * 0.26281 * 9 8 7 26 26 C 1.37884 * 119.95258 * 359.50633 * 25 9 8 27 27 H 1.09007 * 109.47013 * 59.99896 * 1 2 3 28 28 H 1.08997 * 109.47057 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47170 * 299.99782 * 1 2 3 30 30 H 1.09004 * 109.46785 * 239.99684 * 2 1 3 31 31 H 1.09001 * 109.47019 * 120.00580 * 2 1 3 32 32 H 1.09000 * 109.46617 * 29.99885 * 4 3 2 33 33 H 1.08999 * 109.46978 * 149.99694 * 4 3 2 34 34 H 1.09004 * 109.46681 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47082 * 299.99953 * 5 4 3 36 36 H 1.08999 * 109.47540 * 59.99944 * 5 4 3 37 37 H 1.07998 * 119.97940 * 359.97438 * 7 6 3 38 38 H 1.07995 * 120.02561 * 180.02562 * 8 7 6 39 39 H 1.08003 * 126.09829 * 0.02562 * 11 10 9 40 40 H 0.96701 * 113.99975 * 269.97236 * 13 12 11 41 41 H 1.09002 * 109.47289 * 210.00193 * 15 14 12 42 42 H 1.09004 * 109.46919 * 329.99894 * 15 14 12 43 43 H 0.97005 * 120.00694 * 180.02562 * 19 18 16 44 44 H 1.07993 * 120.02700 * 179.72619 * 25 9 8 45 45 H 1.07993 * 119.97457 * 180.23652 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7104 6 6 2.2511 2.0392 1.2090 7 6 2.7140 3.3499 1.2080 8 6 2.9450 4.0014 2.4010 9 6 2.7134 3.3451 3.6085 10 6 2.9619 4.0443 4.8937 11 6 2.7716 3.5028 6.1794 12 6 3.1088 4.4558 7.0850 13 8 3.0650 4.3275 8.4358 14 7 3.4989 5.5599 6.3983 15 6 3.9414 6.8271 6.9857 16 6 5.4336 6.7911 7.1922 17 1 5.9963 5.9122 6.9142 18 6 6.0806 7.8799 7.7371 19 7 5.3955 8.9500 8.0762 20 14 7.9304 7.8351 7.9938 21 1 8.4623 6.5269 7.5345 22 1 8.5648 8.9289 7.2151 23 1 8.2344 8.0137 9.4363 24 7 3.3993 5.2779 5.0300 25 6 2.2539 2.0293 3.6075 26 6 2.0196 1.3829 2.4123 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5818 1.6876 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 3.8891 2.3448 -2.6546 35 1 4.3884 2.2153 -0.9507 36 1 3.8746 0.7621 -1.8407 37 1 2.8937 3.8580 0.2721 38 1 3.3042 5.0199 2.3997 39 1 2.4199 2.5068 6.4047 40 1 2.2194 4.5846 8.8281 41 1 3.6871 7.6472 6.3142 42 1 3.4452 6.9757 7.9448 43 1 5.8507 9.7162 8.4592 44 1 2.0781 1.5175 4.5420 45 1 1.6600 0.3646 2.4110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245943435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:35 Heat of formation + Delta-G solvation = 40.353966 kcal Electronic energy + Delta-G solvation = -25221.847224 eV Core-core repulsion = 21626.281613 eV Total energy + Delta-G solvation = -3595.565611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.09472 -40.55016 -38.26165 -37.56672 -35.72267 -33.69632 -33.37879 -31.75265 -31.55893 -30.02373 -29.37286 -28.02995 -25.32885 -24.89889 -23.95679 -23.03203 -21.80051 -21.70543 -20.59903 -19.22471 -18.87436 -18.20993 -17.28128 -16.88461 -16.55889 -16.16921 -15.90306 -15.43670 -15.40310 -15.03835 -14.89931 -14.78630 -14.45714 -14.25113 -14.16917 -13.88000 -13.67692 -13.44834 -13.33557 -13.07778 -12.92282 -12.76032 -12.66995 -12.57753 -12.43042 -12.22397 -12.03652 -11.88839 -11.79870 -11.53969 -11.20704 -10.99334 -10.77060 -9.88654 -9.80384 -9.44006 -8.39815 -7.98476 -6.54451 0.30211 0.60802 1.02195 1.33621 1.33977 1.47108 1.65733 2.02770 2.23616 2.31409 2.91830 3.12804 3.15348 3.71021 3.93896 3.99485 4.17844 4.19981 4.31653 4.32892 4.55076 4.56232 4.59378 4.60294 4.61740 4.65813 4.78578 4.82930 4.89297 4.92246 4.99986 5.04820 5.05675 5.09855 5.26694 5.34978 5.38196 5.45435 5.46138 5.49071 5.76984 5.82323 5.85685 5.91096 5.93333 6.46774 6.50250 6.62563 6.79287 6.94136 7.16564 8.69429 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.002659 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.555012 B =10527.541974 C =11448.170304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 N -0.625 5.625 4 C 0.114 3.886 5 C -0.168 4.168 6 C 0.225 3.775 7 C -0.203 4.203 8 C -0.059 4.059 9 C -0.093 4.093 10 C 0.109 3.891 11 C -0.286 4.286 12 C 0.251 3.749 13 O -0.470 6.470 14 N -0.365 5.365 15 C 0.273 3.727 16 C -0.554 4.554 17 H 0.044 0.956 18 C 0.020 3.980 19 N -0.918 5.918 20 Si 0.974 3.026 21 H -0.276 1.276 22 H -0.269 1.269 23 H -0.266 1.266 24 N -0.318 5.318 25 C -0.043 4.043 26 C -0.197 4.197 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.059 0.941 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.180 0.820 40 H 0.413 0.587 41 H 0.027 0.973 42 H 0.045 0.955 43 H 0.274 0.726 44 H 0.142 0.858 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.829 -19.541 -17.110 28.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.335 5.335 4 C -0.009 4.009 5 C -0.226 4.226 6 C 0.121 3.879 7 C -0.225 4.225 8 C -0.079 4.079 9 C -0.097 4.097 10 C -0.053 4.053 11 C -0.316 4.316 12 C 0.081 3.919 13 O -0.276 6.276 14 N -0.155 5.155 15 C 0.154 3.846 16 C -0.592 4.592 17 H 0.062 0.938 18 C -0.180 4.180 19 N -0.557 5.557 20 Si 0.797 3.203 21 H -0.201 1.201 22 H -0.194 1.194 23 H -0.190 1.190 24 N -0.145 5.145 25 C -0.064 4.064 26 C -0.219 4.219 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.152 0.848 38 H 0.125 0.875 39 H 0.197 0.803 40 H 0.272 0.728 41 H 0.045 0.955 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.160 0.840 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.884 -18.477 -17.667 27.408 hybrid contribution 0.335 0.375 1.144 1.250 sum -9.549 -18.102 -16.522 26.303 Atomic orbital electron populations 1.22185 0.95925 1.02682 1.01817 1.21570 0.94263 0.81408 1.03646 1.46848 1.70461 1.13809 1.02395 1.21523 0.96791 0.97781 0.84805 1.22183 0.96749 1.02271 1.01447 1.17989 0.92031 0.90973 0.86894 1.20653 1.09296 0.94767 0.97827 1.20975 0.96044 0.99051 0.91837 1.17709 1.08561 0.95088 0.88303 1.20899 0.98562 0.91444 0.94426 1.21245 1.18065 1.02324 0.89955 1.19191 1.00440 0.88195 0.84118 1.84834 1.42330 1.86809 1.13583 1.49841 1.49242 1.12751 1.03710 1.19161 0.95070 0.77688 0.92659 1.21451 0.92590 1.01680 1.43519 0.93799 1.25770 1.04082 0.94177 0.94017 1.69998 1.38124 1.05384 1.42156 0.85278 0.78211 0.78191 0.78606 1.20076 1.19419 1.19042 1.77512 1.25600 1.17669 0.93747 1.21033 0.94473 0.91790 0.99068 1.20777 1.09545 1.01597 0.89992 0.92753 0.90279 0.93530 0.89298 0.90230 0.88973 0.91019 0.90558 0.94116 0.92235 0.84768 0.87542 0.80304 0.72814 0.95475 0.93742 0.91656 0.83991 0.83246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.24 71.98 0.74 -0.89 16 2 C 0.11 1.19 5.87 86.38 0.51 1.70 16 3 N -0.63 -9.70 2.61 -697.19 -1.82 -11.52 16 4 C 0.11 1.42 5.87 86.38 0.51 1.92 16 5 C -0.17 -2.07 10.24 71.98 0.74 -1.34 16 6 C 0.23 4.89 6.55 38.27 0.25 5.14 16 7 C -0.20 -5.19 9.19 22.37 0.21 -4.99 16 8 C -0.06 -1.91 9.68 22.46 0.22 -1.69 16 9 C -0.09 -3.11 5.88 -20.02 -0.12 -3.23 16 10 C 0.11 4.45 6.98 42.51 0.30 4.75 16 11 C -0.29 -10.76 10.19 22.31 0.23 -10.53 16 12 C 0.25 10.82 7.98 83.50 0.67 11.49 16 13 O -0.47 -17.60 13.58 -90.81 -1.23 -18.83 16 14 N -0.36 -18.44 3.62 -462.82 -1.67 -20.11 16 15 C 0.27 15.29 6.14 85.63 0.53 15.82 16 16 C -0.55 -33.26 9.39 25.60 0.24 -33.02 16 17 H 0.04 2.75 7.81 -2.91 -0.02 2.73 16 18 C 0.02 1.17 5.46 84.65 0.46 1.63 16 19 N -0.92 -53.97 13.29 21.44 0.28 -53.69 16 20 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 24 N -0.32 -15.60 12.21 -48.21 -0.59 -16.19 16 25 C -0.04 -1.12 9.56 22.46 0.21 -0.90 16 26 C -0.20 -4.17 9.19 22.37 0.21 -3.96 16 27 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.65 8.07 -2.38 -0.02 0.63 16 31 H 0.08 0.81 6.18 -2.39 -0.01 0.79 16 32 H 0.09 0.78 8.07 -2.39 -0.02 0.76 16 33 H 0.07 0.98 6.18 -2.39 -0.01 0.97 16 34 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.13 2.94 6.12 -2.91 -0.02 2.93 16 38 H 0.11 3.83 7.84 -2.91 -0.02 3.80 16 39 H 0.18 5.17 7.32 -2.91 -0.02 5.14 16 40 H 0.41 10.47 9.06 -74.06 -0.67 9.80 16 41 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.04 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 44 H 0.14 3.05 7.02 -2.91 -0.02 3.03 16 45 H 0.15 2.29 6.12 -2.91 -0.02 2.27 16 Total: -1.00 -74.12 377.84 3.22 -70.90 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.33 Total: 20.17 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 5.88 Total: -18.11 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -3.79 Total: -101.51 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.23 Total: -18.83 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -74.12 3.22 -70.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245943435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.254 kcal (2) G-P(sol) polarization free energy of solvation -74.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds