Wall clock time and date at job start Tue Mar 31 2020 11:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35947 * 117.00183 * 2 1 4 4 C 1.39228 * 119.83165 * 359.97438 * 3 2 1 5 5 C 1.36546 * 120.61357 * 179.97438 * 4 3 2 6 6 C 1.39753 * 119.96214 * 0.04362 * 5 4 3 7 7 N 1.35875 * 133.51882 * 180.02562 * 6 5 4 8 8 C 1.30063 * 109.64772 * 179.67225 * 7 6 5 9 9 C 1.50701 * 124.95469 * 180.26980 * 8 7 6 10 10 N 1.46901 * 109.46931 * 275.21665 * 9 8 7 11 11 C 1.46844 * 111.00441 * 66.04711 * 10 9 8 12 12 C 1.53035 * 109.52462 * 185.83805 * 11 10 9 13 13 C 1.53116 * 109.28205 * 300.81653 * 12 11 10 14 14 C 1.53121 * 109.15710 * 57.65513 * 13 12 11 15 15 H 1.09005 * 109.50682 * 62.32607 * 14 13 12 16 16 C 1.50693 * 109.50300 * 182.40734 * 14 13 12 17 17 H 1.08001 * 120.00181 * 120.00133 * 16 14 13 18 18 C 1.37878 * 120.00162 * 300.00090 * 16 14 13 19 19 N 1.31517 * 120.00343 * 180.02562 * 18 16 14 20 20 Si 1.86802 * 119.99723 * 359.97438 * 18 16 14 21 21 H 1.48500 * 109.46827 * 90.00318 * 20 18 16 22 22 H 1.48494 * 109.47154 * 210.00145 * 20 18 16 23 23 H 1.48492 * 109.47117 * 330.00491 * 20 18 16 24 24 C 1.46855 * 110.99800 * 190.25459 * 10 9 8 25 25 N 1.36142 * 110.09316 * 0.46020 * 8 7 6 26 26 H 0.97001 * 126.35512 * 179.81800 * 25 8 7 27 27 C 1.38063 * 107.29545 * 359.54472 * 25 8 7 28 28 C 1.38296 * 119.83553 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46897 * 299.99691 * 1 2 3 30 30 H 1.09002 * 109.47132 * 59.99718 * 1 2 3 31 31 H 1.09000 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.69652 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.01956 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.46940 * 35.21238 * 9 8 7 35 35 H 1.08996 * 109.47373 * 155.21404 * 9 8 7 36 36 H 1.09003 * 109.46151 * 305.85488 * 11 10 9 37 37 H 1.09000 * 109.46479 * 65.81738 * 11 10 9 38 38 H 1.09005 * 109.50555 * 60.76088 * 12 11 10 39 39 H 1.09006 * 109.50160 * 180.87211 * 12 11 10 40 40 H 1.08995 * 109.52447 * 177.55518 * 13 12 11 41 41 H 1.09001 * 109.51913 * 297.69263 * 13 12 11 42 42 H 0.97003 * 120.00204 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.46175 * 294.17547 * 24 10 9 44 44 H 1.09000 * 109.45992 * 54.14151 * 24 10 9 45 45 H 1.08006 * 120.17756 * 359.95837 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2845 2.3767 -0.0005 5 6 1.8878 3.6017 0.0000 6 6 3.2824 3.6929 0.0001 7 7 4.1517 4.7372 0.0011 8 6 5.3729 4.2896 0.0078 9 6 6.6086 5.1522 0.0166 10 7 6.9463 5.5379 -1.3600 11 6 5.9138 6.4127 -1.9299 12 6 6.2232 6.6752 -3.4055 13 6 7.5998 7.3351 -3.5238 14 6 8.6500 6.4258 -2.8798 15 1 8.6896 5.4782 -3.4171 16 6 9.9991 7.0947 -2.9393 17 1 10.5343 7.3130 -2.0270 18 6 10.5502 7.4279 -4.1584 19 7 11.7278 8.0112 -4.2104 20 14 9.6248 7.0497 -5.7364 21 1 8.7601 8.2035 -6.0918 22 1 10.5957 6.8026 -6.8325 23 1 8.7830 5.8424 -5.5393 24 6 8.2703 6.1706 -1.4194 25 7 5.3721 2.9282 0.0013 26 1 6.1529 2.3527 0.0018 27 6 4.0536 2.5185 0.0004 28 6 3.4275 1.2797 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2065 2.3114 -0.0005 33 1 1.2876 4.4996 0.0000 34 1 6.4223 6.0477 0.6095 35 1 7.4379 4.5945 0.4516 36 1 4.9404 5.9298 -1.8432 37 1 5.8993 7.3584 -1.3880 38 1 6.2241 5.7312 -3.9507 39 1 5.4650 7.3370 -3.8242 40 1 7.8430 7.4844 -4.5758 41 1 7.5873 8.2977 -3.0126 42 1 12.1157 8.2454 -5.0681 43 1 8.2448 7.1174 -0.8800 44 1 9.0084 5.5119 -0.9620 45 1 4.0159 0.3740 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249414536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:10 Heat of formation + Delta-G solvation = 40.777357 kcal Electronic energy + Delta-G solvation = -25816.375157 eV Core-core repulsion = 22220.827905 eV Total energy + Delta-G solvation = -3595.547252 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -42.22918 -39.77338 -38.45167 -36.25982 -34.00051 -33.16233 -32.14665 -30.47850 -30.28905 -29.41206 -27.43194 -26.53157 -24.92207 -23.08310 -22.31442 -22.05560 -21.29431 -20.53525 -18.88487 -18.65643 -17.46026 -16.83585 -16.67739 -16.11900 -15.89846 -15.83833 -14.99436 -14.56450 -14.37395 -14.08032 -13.94201 -13.70412 -13.56491 -13.30531 -12.95049 -12.62087 -12.60595 -12.44468 -12.23920 -12.13593 -11.59349 -11.39038 -11.17052 -11.04814 -11.03420 -10.59708 -10.34310 -10.09276 -10.02315 -9.96957 -9.70184 -9.12878 -8.94009 -8.58202 -8.51712 -8.02331 -7.80503 -6.07613 -4.06979 0.81928 1.31933 2.55182 2.67797 3.22374 3.29402 3.40423 3.43734 3.67086 4.01864 4.39463 4.42475 4.49999 4.66616 4.75899 4.82170 4.92425 5.06960 5.13712 5.22388 5.24373 5.29535 5.42069 5.47531 5.60494 5.64104 5.77044 5.86517 6.00661 6.05202 6.13769 6.16127 6.24213 6.28486 6.35016 6.49656 6.56532 6.60703 6.79754 6.84302 7.09969 7.16890 7.23269 7.36671 7.45635 7.61894 7.82831 7.85987 8.50434 8.95109 9.55260 11.05428 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.002643 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.348019 B =10593.004271 C =10783.304679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.137 3.863 4 C -0.207 4.207 5 C -0.024 4.024 6 C 0.018 3.982 7 N -0.485 5.485 8 C 0.306 3.694 9 C 0.126 3.874 10 N -0.539 5.539 11 C 0.060 3.940 12 C -0.119 4.119 13 C -0.123 4.123 14 C 0.021 3.979 15 H 0.035 0.965 16 C -0.514 4.514 17 H 0.073 0.927 18 C 0.071 3.929 19 N -0.902 5.902 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.299 1.299 23 H -0.264 1.264 24 C 0.078 3.922 25 N -0.589 5.589 26 H 0.425 0.575 27 C 0.085 3.915 28 C -0.152 4.152 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.263 0.737 43 H 0.032 0.968 44 H 0.069 0.931 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.285 -13.563 10.140 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.091 3.909 4 C -0.228 4.228 5 C -0.044 4.044 6 C -0.100 4.100 7 N -0.205 5.205 8 C 0.039 3.961 9 C -0.004 4.004 10 N -0.265 5.265 11 C -0.068 4.068 12 C -0.157 4.157 13 C -0.161 4.161 14 C 0.002 3.998 15 H 0.053 0.947 16 C -0.553 4.553 17 H 0.091 0.909 18 C -0.131 4.131 19 N -0.540 5.540 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.227 1.227 23 H -0.189 1.189 24 C -0.049 4.049 25 N -0.200 5.200 26 H 0.264 0.736 27 C -0.026 4.026 28 C -0.174 4.174 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.050 0.950 44 H 0.087 0.913 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.347 -13.216 9.745 26.932 hybrid contribution -0.042 -0.367 -0.539 0.654 sum -21.388 -13.583 9.207 26.958 Atomic orbital electron populations 1.23058 0.78267 1.03878 1.01476 1.86046 1.21397 1.26674 1.88970 1.18384 0.91151 0.84146 0.97240 1.20736 1.00067 0.91646 1.10302 1.19795 0.90910 0.97509 0.96144 1.19035 0.94050 0.88482 1.08388 1.70424 0.98306 1.29748 1.22050 1.23527 0.95194 0.80527 0.96887 1.20556 0.90336 0.96758 0.92740 1.62021 1.04212 1.44685 1.15539 1.22107 0.94794 0.94532 0.95371 1.21649 0.98157 1.00527 0.95317 1.22037 0.93971 0.99838 1.00205 1.19154 0.93990 0.95696 0.90946 0.94704 1.20977 1.00837 1.39017 0.94444 0.90880 1.24976 0.94690 0.94406 0.98994 1.69897 1.16712 1.41674 1.25694 0.86830 0.78899 0.79407 0.83031 1.20685 1.22677 1.18871 1.22139 0.86468 0.96241 1.00018 1.43029 1.06607 1.07944 1.62425 0.73578 1.18363 0.84617 0.95482 1.04185 1.18789 0.91549 0.95048 1.12045 0.92580 0.92525 0.88302 0.84901 0.84974 0.91170 0.88747 0.90494 0.94943 0.92140 0.92720 0.93590 0.92421 0.92676 0.94957 0.91262 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.06 10.49 -19.57 -0.21 -3.26 16 3 C 0.14 1.48 6.68 -39.19 -0.26 1.21 16 4 C -0.21 -2.01 8.96 -39.82 -0.36 -2.37 16 5 C -0.02 -0.28 10.04 -39.63 -0.40 -0.67 16 6 C 0.02 0.26 7.23 -84.66 -0.61 -0.35 16 7 N -0.48 -7.39 10.02 -8.20 -0.08 -7.47 16 8 C 0.31 4.22 6.88 -154.76 -1.06 3.16 16 9 C 0.13 1.68 5.59 -4.97 -0.03 1.65 16 10 N -0.54 -8.97 4.65 -236.10 -1.10 -10.07 16 11 C 0.06 1.01 5.30 -3.84 -0.02 0.99 16 12 C -0.12 -2.18 6.09 -26.65 -0.16 -2.34 16 13 C -0.12 -2.66 4.73 -26.61 -0.13 -2.79 16 14 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 15 H 0.03 0.85 7.21 -51.93 -0.37 0.48 16 16 C -0.51 -14.10 9.14 -34.44 -0.31 -14.42 16 17 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 18 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 19 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 20 Si 0.89 22.12 24.35 -169.99 -4.14 17.98 16 21 H -0.28 -6.82 6.89 56.52 0.39 -6.43 16 22 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 23 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 24 C 0.08 1.48 4.68 -3.83 -0.02 1.46 16 25 N -0.59 -7.02 6.24 -7.99 -0.05 -7.07 16 26 H 0.43 3.84 8.96 -40.82 -0.37 3.48 16 27 C 0.09 1.10 7.30 -83.99 -0.61 0.48 16 28 C -0.15 -1.74 10.01 -39.35 -0.39 -2.14 16 29 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 30 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.13 0.90 6.25 -52.49 -0.33 0.58 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 35 H 0.09 1.04 7.98 -51.93 -0.41 0.63 16 36 H 0.08 1.31 6.19 -51.93 -0.32 0.98 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 1.06 3.34 -51.93 -0.17 0.89 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 45 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -32.69 352.61 -9.72 -42.41 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.59 Total: 1.50 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -3.65 Total: -12.72 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.46 Total: -51.22 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: -0.21 Total: -3.26 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.69 -9.72 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249414536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.185 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds