Wall clock time and date at job start Tue Mar 31 2020 11:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35947 * 117.00183 * 2 1 4 4 C 1.39228 * 119.83165 * 359.97438 * 3 2 1 5 5 C 1.36546 * 120.61357 * 179.97438 * 4 3 2 6 6 C 1.39753 * 119.96214 * 0.04362 * 5 4 3 7 7 N 1.35875 * 133.51882 * 180.02562 * 6 5 4 8 8 C 1.30063 * 109.64772 * 179.67225 * 7 6 5 9 9 C 1.50701 * 124.95469 * 180.26980 * 8 7 6 10 10 N 1.46901 * 109.46931 * 275.21665 * 9 8 7 11 11 C 1.46844 * 111.00441 * 66.04711 * 10 9 8 12 12 C 1.53035 * 109.52462 * 185.83805 * 11 10 9 13 13 C 1.53116 * 109.28205 * 300.81653 * 12 11 10 14 14 C 1.53121 * 109.15710 * 57.65513 * 13 12 11 15 15 H 1.09005 * 109.50682 * 62.32607 * 14 13 12 16 16 C 1.50693 * 109.50300 * 182.40734 * 14 13 12 17 17 H 1.08001 * 120.00181 * 120.00133 * 16 14 13 18 18 C 1.37878 * 120.00162 * 300.00090 * 16 14 13 19 19 N 1.31517 * 120.00343 * 180.02562 * 18 16 14 20 20 Si 1.86802 * 119.99723 * 359.97438 * 18 16 14 21 21 H 1.48500 * 109.46827 * 90.00318 * 20 18 16 22 22 H 1.48494 * 109.47154 * 210.00145 * 20 18 16 23 23 H 1.48492 * 109.47117 * 330.00491 * 20 18 16 24 24 C 1.46855 * 110.99800 * 190.25459 * 10 9 8 25 25 N 1.36142 * 110.09316 * 0.46020 * 8 7 6 26 26 H 0.97001 * 126.35512 * 179.81800 * 25 8 7 27 27 C 1.38063 * 107.29545 * 359.54472 * 25 8 7 28 28 C 1.38296 * 119.83553 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46897 * 299.99691 * 1 2 3 30 30 H 1.09002 * 109.47132 * 59.99718 * 1 2 3 31 31 H 1.09000 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.69652 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.01956 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.46940 * 35.21238 * 9 8 7 35 35 H 1.08996 * 109.47373 * 155.21404 * 9 8 7 36 36 H 1.09003 * 109.46151 * 305.85488 * 11 10 9 37 37 H 1.09000 * 109.46479 * 65.81738 * 11 10 9 38 38 H 1.09005 * 109.50555 * 60.76088 * 12 11 10 39 39 H 1.09006 * 109.50160 * 180.87211 * 12 11 10 40 40 H 1.08995 * 109.52447 * 177.55518 * 13 12 11 41 41 H 1.09001 * 109.51913 * 297.69263 * 13 12 11 42 42 H 0.97003 * 120.00204 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.46175 * 294.17547 * 24 10 9 44 44 H 1.09000 * 109.45992 * 54.14151 * 24 10 9 45 45 H 1.08006 * 120.17756 * 359.95837 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2845 2.3767 -0.0005 5 6 1.8878 3.6017 0.0000 6 6 3.2824 3.6929 0.0001 7 7 4.1517 4.7372 0.0011 8 6 5.3729 4.2896 0.0078 9 6 6.6086 5.1522 0.0166 10 7 6.9463 5.5379 -1.3600 11 6 5.9138 6.4127 -1.9299 12 6 6.2232 6.6752 -3.4055 13 6 7.5998 7.3351 -3.5238 14 6 8.6500 6.4258 -2.8798 15 1 8.6896 5.4782 -3.4171 16 6 9.9991 7.0947 -2.9393 17 1 10.5343 7.3130 -2.0270 18 6 10.5502 7.4279 -4.1584 19 7 11.7278 8.0112 -4.2104 20 14 9.6248 7.0497 -5.7364 21 1 8.7601 8.2035 -6.0918 22 1 10.5957 6.8026 -6.8325 23 1 8.7830 5.8424 -5.5393 24 6 8.2703 6.1706 -1.4194 25 7 5.3721 2.9282 0.0013 26 1 6.1529 2.3527 0.0018 27 6 4.0536 2.5185 0.0004 28 6 3.4275 1.2797 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2065 2.3114 -0.0005 33 1 1.2876 4.4996 0.0000 34 1 6.4223 6.0477 0.6095 35 1 7.4379 4.5945 0.4516 36 1 4.9404 5.9298 -1.8432 37 1 5.8993 7.3584 -1.3880 38 1 6.2241 5.7312 -3.9507 39 1 5.4650 7.3370 -3.8242 40 1 7.8430 7.4844 -4.5758 41 1 7.5873 8.2977 -3.0126 42 1 12.1157 8.2454 -5.0681 43 1 8.2448 7.1174 -0.8800 44 1 9.0084 5.5119 -0.9620 45 1 4.0159 0.3740 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249414536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:06 Heat of formation + Delta-G solvation = 18.336879 kcal Electronic energy + Delta-G solvation = -25817.348249 eV Core-core repulsion = 22220.827905 eV Total energy + Delta-G solvation = -3596.520344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -43.14866 -40.53141 -39.87729 -37.12052 -35.63066 -34.13784 -33.94708 -32.01009 -31.28549 -30.43907 -28.10665 -27.50780 -26.82415 -24.36564 -23.36215 -23.14199 -22.62287 -21.63383 -20.50812 -19.42236 -18.83915 -18.36463 -17.57846 -17.31594 -16.72286 -16.62528 -16.38923 -15.92114 -15.61094 -15.35559 -15.22083 -14.90871 -14.80111 -14.58066 -14.38624 -13.91291 -13.79638 -13.62725 -13.18457 -12.99609 -12.97489 -12.79812 -12.69718 -12.27967 -12.06215 -11.94329 -11.90407 -11.75945 -11.47068 -11.26005 -11.04860 -10.98934 -10.79159 -10.60925 -9.44911 -9.31727 -8.71657 -8.28951 -6.31513 -0.05282 0.47583 1.30714 1.36639 1.47147 1.63490 1.79890 2.33338 2.52021 2.78073 3.01197 3.07209 3.25185 3.60646 3.92932 3.99618 4.06682 4.10310 4.15132 4.30269 4.34863 4.43878 4.47546 4.47689 4.48746 4.54296 4.58002 4.65290 4.76470 4.79789 4.83100 4.94831 4.98212 5.06772 5.14901 5.18536 5.21944 5.33484 5.41211 5.44516 5.63077 5.68588 5.72425 6.08340 6.11428 6.34182 6.41232 6.43120 6.75915 6.89083 7.34176 8.87476 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.002643 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.348019 B =10593.004271 C =10783.304679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.139 3.861 4 C -0.197 4.197 5 C -0.033 4.033 6 C -0.015 4.015 7 N -0.508 5.508 8 C 0.295 3.705 9 C 0.130 3.870 10 N -0.542 5.542 11 C 0.066 3.934 12 C -0.112 4.112 13 C -0.122 4.122 14 C 0.020 3.980 15 H 0.025 0.975 16 C -0.514 4.514 17 H 0.040 0.960 18 C 0.015 3.985 19 N -0.948 5.948 20 Si 0.947 3.053 21 H -0.270 1.270 22 H -0.301 1.301 23 H -0.251 1.251 24 C 0.089 3.911 25 N -0.581 5.581 26 H 0.436 0.564 27 C 0.077 3.923 28 C -0.167 4.167 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.165 0.835 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.033 0.967 41 H 0.052 0.948 42 H 0.265 0.735 43 H 0.027 0.973 44 H 0.075 0.925 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.340 -15.184 10.277 30.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.092 3.908 4 C -0.217 4.217 5 C -0.053 4.053 6 C -0.132 4.132 7 N -0.230 5.230 8 C 0.027 3.973 9 C 0.000 4.000 10 N -0.267 5.267 11 C -0.062 4.062 12 C -0.150 4.150 13 C -0.159 4.159 14 C 0.001 3.999 15 H 0.043 0.957 16 C -0.552 4.552 17 H 0.058 0.942 18 C -0.182 4.182 19 N -0.589 5.589 20 Si 0.775 3.225 21 H -0.196 1.196 22 H -0.229 1.229 23 H -0.175 1.175 24 C -0.038 4.038 25 N -0.193 5.193 26 H 0.277 0.723 27 C -0.035 4.035 28 C -0.189 4.189 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.182 0.818 33 H 0.163 0.837 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.100 0.900 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.094 0.906 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -24.425 -14.865 9.902 30.259 hybrid contribution 0.811 0.042 -0.475 0.941 sum -23.614 -14.823 9.427 29.432 Atomic orbital electron populations 1.23400 0.76058 1.05704 1.02596 1.86044 1.23704 1.26126 1.88588 1.18567 0.91180 0.84981 0.96068 1.21048 1.01600 0.90600 1.08461 1.20072 0.90246 0.98784 0.96164 1.19444 0.95176 0.88616 1.09963 1.70341 0.99075 1.30856 1.22688 1.23405 0.94871 0.81189 0.97797 1.20595 0.91275 0.97302 0.90784 1.61904 1.02915 1.43959 1.17947 1.22034 0.94961 0.94727 0.94475 1.21601 0.96531 1.00406 0.96475 1.21937 0.95521 0.99526 0.98964 1.19074 0.92221 0.94836 0.93776 0.95708 1.21307 1.02589 1.38203 0.93112 0.94171 1.25777 0.95442 0.94539 1.02474 1.70035 1.18611 1.43722 1.26542 0.85863 0.77779 0.79966 0.78895 1.19633 1.22907 1.17473 1.21846 0.88206 0.96508 0.97223 1.42952 1.06950 1.07546 1.61893 0.72263 1.18548 0.84770 0.95755 1.04430 1.18991 0.92321 0.94976 1.12596 0.91278 0.91486 0.86337 0.81777 0.83691 0.90744 0.86381 0.90018 0.94838 0.92502 0.90524 0.94874 0.92952 0.92641 0.95450 0.90623 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -5.54 10.49 -92.96 -0.98 -6.51 16 3 C 0.14 2.69 6.68 22.52 0.15 2.84 16 4 C -0.20 -3.31 8.96 22.11 0.20 -3.11 16 5 C -0.03 -0.70 10.04 22.24 0.22 -0.48 16 6 C -0.01 -0.39 7.23 39.44 0.29 -0.11 16 7 N -0.51 -14.95 10.02 -179.84 -1.80 -16.75 16 8 C 0.30 7.75 6.88 137.90 0.95 8.70 16 9 C 0.13 3.25 5.59 85.56 0.48 3.73 16 10 N -0.54 -17.21 4.65 -900.90 -4.19 -21.39 16 11 C 0.07 2.12 5.30 86.33 0.46 2.58 16 12 C -0.11 -3.90 6.09 30.64 0.19 -3.71 16 13 C -0.12 -5.14 4.73 30.67 0.15 -5.00 16 14 C 0.02 0.92 1.85 -11.49 -0.02 0.90 16 15 H 0.02 1.19 7.21 -2.38 -0.02 1.17 16 16 C -0.51 -28.74 9.14 25.60 0.23 -28.50 16 17 H 0.04 2.45 7.99 -2.91 -0.02 2.42 16 18 C 0.01 0.86 5.45 84.65 0.46 1.32 16 19 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 20 Si 0.95 45.84 24.35 68.60 1.67 47.51 16 21 H -0.27 -12.55 6.89 99.48 0.69 -11.86 16 22 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 23 H -0.25 -11.47 6.53 99.48 0.65 -10.82 16 24 C 0.09 3.34 4.68 86.33 0.40 3.74 16 25 N -0.58 -13.12 6.24 -179.20 -1.12 -14.24 16 26 H 0.44 7.29 8.96 -92.71 -0.83 6.46 16 27 C 0.08 1.89 7.30 38.85 0.28 2.17 16 28 C -0.17 -3.57 10.01 22.42 0.22 -3.35 16 29 H 0.07 0.37 7.65 -2.39 -0.02 0.35 16 30 H 0.07 0.40 7.65 -2.39 -0.02 0.38 16 31 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.16 1.61 6.25 -2.91 -0.02 1.59 16 33 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.07 1.83 8.12 -2.38 -0.02 1.81 16 35 H 0.12 2.36 7.98 -2.39 -0.02 2.34 16 36 H 0.08 2.62 6.19 -2.39 -0.01 2.61 16 37 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 40 H 0.03 1.47 3.34 -2.39 -0.01 1.47 16 41 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 2.71 8.01 -2.39 -0.02 2.69 16 45 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -71.44 352.61 -0.24 -71.68 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.10 Total: 15.64 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 5.77 Total: -17.05 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -6.81 Total: -111.27 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.98 Total: -6.51 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.67 Total: 47.51 kcal Total: -71.44 -0.24 -71.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249414536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.018 kcal (2) G-P(sol) polarization free energy of solvation -71.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds