Wall clock time and date at job start Tue Mar 31 2020 12:37:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31549 * 1
3 3 Si 1.86802 * 120.00081 * 2 1
4 4 H 1.48499 * 109.47509 * 269.99919 * 3 2 1
5 5 H 1.48504 * 109.47032 * 30.00301 * 3 2 1
6 6 H 1.48504 * 109.47304 * 149.99814 * 3 2 1
7 7 C 1.38656 * 120.00461 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00614 * 180.02562 * 7 2 1
9 9 O 1.34837 * 119.99592 * 0.02562 * 7 2 1
10 10 C 1.35746 * 116.99921 * 185.05999 * 9 7 2
11 11 C 1.38896 * 120.07058 * 354.48569 * 10 9 7
12 12 C 1.38079 * 119.93228 * 179.97438 * 11 10 9
13 13 C 1.38320 * 120.06892 * 359.75100 * 12 11 10
14 14 C 1.38283 * 120.13701 * 0.50913 * 13 12 11
15 15 C 1.50697 * 119.96715 * 179.76993 * 14 13 12
16 16 N 1.46906 * 109.47023 * 269.72083 * 15 14 13
17 17 C 1.46896 * 111.00336 * 179.97438 * 16 15 14
18 18 H 1.09002 * 109.46874 * 34.99672 * 17 16 15
19 19 C 1.53001 * 109.47025 * 275.00017 * 17 16 15
20 20 C 1.53005 * 109.46855 * 179.97438 * 19 17 16
21 21 C 1.53003 * 109.47076 * 60.00183 * 20 19 17
22 22 C 1.53000 * 109.46802 * 299.99841 * 21 20 19
23 23 H 1.08992 * 109.47019 * 299.99598 * 22 21 20
24 24 C 1.53003 * 109.46802 * 180.02562 * 22 21 20
25 25 C 1.52996 * 117.49702 * 128.61890 * 24 22 21
26 26 C 1.52995 * 60.00173 * 252.50914 * 25 24 22
27 27 C 1.52997 * 109.47285 * 60.00424 * 22 21 20
28 28 C 1.38124 * 120.06960 * 359.48879 * 14 13 12
29 29 H 0.96998 * 120.00432 * 0.02562 * 1 2 3
30 30 H 1.07999 * 120.03525 * 0.02562 * 11 10 9
31 31 H 1.07996 * 119.96672 * 180.02562 * 12 11 10
32 32 H 1.08001 * 119.93451 * 180.26919 * 13 12 11
33 33 H 1.08996 * 109.47626 * 149.72419 * 15 14 13
34 34 H 1.09004 * 109.47183 * 29.71725 * 15 14 13
35 35 H 1.00902 * 110.99901 * 56.04636 * 16 15 14
36 36 H 1.09006 * 109.47160 * 60.00048 * 19 17 16
37 37 H 1.09002 * 109.47539 * 299.99563 * 19 17 16
38 38 H 1.08992 * 109.47203 * 299.99743 * 20 19 17
39 39 H 1.09008 * 109.46874 * 179.97438 * 20 19 17
40 40 H 1.08994 * 109.46716 * 179.97438 * 21 20 19
41 41 H 1.09001 * 109.46738 * 59.99937 * 21 20 19
42 42 H 1.08998 * 115.54727 * 274.33269 * 24 22 21
43 43 H 1.08997 * 117.50179 * 0.02562 * 25 24 22
44 44 H 1.09007 * 117.49529 * 145.02020 * 25 24 22
45 45 H 1.09003 * 117.50532 * 252.50972 * 26 25 24
46 46 H 1.09006 * 117.51665 * 107.48237 * 26 25 24
47 47 H 1.09001 * 109.47501 * 59.99142 * 27 22 21
48 48 H 1.08995 * 109.47139 * 179.97438 * 27 22 21
49 49 H 1.07994 * 120.03481 * 180.28146 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2495 1.6177 0.0000
4 1 2.4971 2.0465 -1.4000
5 1 1.4470 2.6527 0.7001
6 1 3.5471 1.4402 0.7001
7 6 2.0089 -1.2007 -0.0005
8 1 3.0888 -1.2008 -0.0001
9 8 1.3347 -2.3685 -0.0016
10 6 2.0699 -3.5046 0.1046
11 6 3.4573 -3.4395 0.0927
12 6 4.2024 -4.5969 0.2015
13 6 3.5685 -5.8199 0.3273
14 6 2.1874 -5.8886 0.3341
15 6 1.5009 -7.2236 0.4662
16 7 1.2718 -7.7907 -0.8695
17 6 0.6032 -9.0956 -0.7799
18 1 -0.0935 -9.0900 0.0584
19 6 1.6495 -10.1912 -0.5661
20 6 0.9530 -11.5502 -0.4721
21 6 0.1878 -11.8219 -1.7688
22 6 -0.8585 -10.7263 -1.9826
23 1 -1.5550 -10.7205 -1.1442
24 6 -1.6242 -10.9983 -3.2790
25 6 -3.1526 -11.0003 -3.2096
26 6 -2.3929 -12.3171 -3.3821
27 6 -0.1620 -9.3673 -2.0766
28 6 1.4365 -4.7344 0.2257
29 1 -0.4851 0.8400 -0.0004
30 1 3.9528 -2.4844 -0.0006
31 1 5.2811 -4.5468 0.1927
32 1 4.1535 -6.7234 0.4166
33 1 0.5453 -7.0921 0.9738
34 1 2.1298 -7.8999 1.0451
35 1 2.1362 -7.8624 -1.3850
36 1 2.1944 -9.9979 0.3580
37 1 2.3463 -10.1969 -1.4043
38 1 0.2566 -11.5444 0.3664
39 1 1.6985 -12.3309 -0.3202
40 1 -0.3080 -12.7903 -1.7020
41 1 0.8843 -11.8278 -2.6073
42 1 -1.1617 -10.6130 -4.1877
43 1 -3.6127 -10.8075 -2.2405
44 1 -3.6961 -10.6161 -4.0729
45 1 -2.4365 -12.7993 -4.3587
46 1 -2.3528 -12.9912 -2.5264
47 1 0.5345 -9.3731 -2.9150
48 1 -0.9074 -8.5868 -2.2294
49 1 0.3580 -4.7883 0.2356
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000089630866.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:38
Heat of formation + Delta-G solvation = -3.423683 kcal
Electronic energy + Delta-G solvation = -25390.526016 eV
Core-core repulsion = 21896.602407 eV
Total energy + Delta-G solvation = -3493.923609 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-39.68776 -38.98259 -37.35183 -36.45571 -34.41349 -32.25366 -31.10045 -30.73706
-29.18743 -28.12959 -25.44668 -24.47827 -23.50857 -22.77459 -21.83916 -21.60778
-20.65624 -20.29522 -19.92120 -17.63941 -16.92537 -16.27075 -15.59576 -15.17088
-14.87704 -14.70259 -14.61768 -14.50677 -14.33892 -14.01240 -13.54826 -13.37001
-13.31349 -13.13541 -12.69513 -12.51317 -12.14413 -11.97213 -11.91603 -11.79012
-11.56405 -11.32769 -11.26676 -11.22786 -10.87807 -10.76816 -10.72393 -10.69452
-10.62527 -10.53966 -10.42647 -10.13063 -9.95203 -9.29492 -8.81386 -8.28258
-8.01124 -7.19631 -6.41019 -4.00095 2.15825 2.40774 3.14866 3.15630
3.20452 3.55631 3.99422 4.10368 4.38812 4.55800 4.63262 4.73195
4.75458 4.78412 4.85893 5.06825 5.09184 5.13642 5.19800 5.28776
5.33611 5.38313 5.39566 5.44858 5.47444 5.50485 5.60761 5.66873
5.72185 5.74694 5.86370 5.88201 5.89478 5.93474 5.97767 5.98974
6.04470 6.07838 6.21686 6.29646 6.32626 6.41024 6.70464 6.96458
7.10552 7.15634 7.34012 7.38460 7.47876 7.54673 7.86397 8.04013
9.04616 9.75858 10.77164
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.018918 B = 0.002310 C = 0.002104
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1479.695771 B =12120.810680 C =13304.004978
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.863 5.863
2 C 0.039 3.961
3 Si 0.940 3.060
4 H -0.273 1.273
5 H -0.278 1.278
6 H -0.268 1.268
7 C -0.391 4.391
8 H 0.091 0.909
9 O -0.179 6.179
10 C 0.152 3.848
11 C -0.232 4.232
12 C -0.076 4.076
13 C -0.207 4.207
14 C -0.047 4.047
15 C 0.107 3.893
16 N -0.677 5.677
17 C 0.088 3.912
18 H 0.075 0.925
19 C -0.150 4.150
20 C -0.115 4.115
21 C -0.111 4.111
22 C -0.055 4.055
23 H 0.069 0.931
24 C -0.144 4.144
25 C -0.180 4.180
26 C -0.183 4.183
27 C -0.098 4.098
28 C -0.166 4.166
29 H 0.269 0.731
30 H 0.125 0.875
31 H 0.106 0.894
32 H 0.100 0.900
33 H 0.075 0.925
34 H 0.033 0.967
35 H 0.342 0.658
36 H 0.059 0.941
37 H 0.063 0.937
38 H 0.060 0.940
39 H 0.059 0.941
40 H 0.060 0.940
41 H 0.062 0.938
42 H 0.103 0.897
43 H 0.093 0.907
44 H 0.092 0.908
45 H 0.090 0.910
46 H 0.092 0.908
47 H 0.062 0.938
48 H 0.072 0.928
49 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.402 -23.095 -3.063 23.301
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.498 5.498
2 C -0.165 4.165
3 Si 0.765 3.235
4 H -0.199 1.199
5 H -0.203 1.203
6 H -0.192 1.192
7 C -0.467 4.467
8 H 0.108 0.892
9 O -0.082 6.082
10 C 0.098 3.902
11 C -0.252 4.252
12 C -0.095 4.095
13 C -0.227 4.227
14 C -0.048 4.048
15 C -0.021 4.021
16 N -0.306 5.306
17 C -0.022 4.022
18 H 0.093 0.907
19 C -0.189 4.189
20 C -0.153 4.153
21 C -0.148 4.148
22 C -0.074 4.074
23 H 0.087 0.913
24 C -0.162 4.162
25 C -0.217 4.217
26 C -0.220 4.220
27 C -0.136 4.136
28 C -0.186 4.186
29 H 0.079 0.921
30 H 0.143 0.857
31 H 0.124 0.876
32 H 0.119 0.881
33 H 0.094 0.906
34 H 0.051 0.949
35 H 0.160 0.840
36 H 0.078 0.922
37 H 0.082 0.918
38 H 0.079 0.921
39 H 0.078 0.922
40 H 0.078 0.922
41 H 0.081 0.919
42 H 0.121 0.879
43 H 0.112 0.888
44 H 0.110 0.890
45 H 0.109 0.891
46 H 0.110 0.890
47 H 0.080 0.920
48 H 0.091 0.909
49 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -0.628 -22.504 -3.173 22.735
hybrid contribution 1.326 0.309 0.266 1.387
sum 0.698 -22.194 -2.906 22.395
Atomic orbital electron populations
1.70037 1.05933 1.27584 1.46287 1.25275 0.95828 0.98782 0.96658
0.85728 0.78903 0.80191 0.78684 1.19905 1.20283 1.19249 1.21313
0.91754 0.80881 1.52801 0.89151 1.83985 1.34233 1.11373 1.78624
1.19365 0.90241 0.88092 0.92469 1.21175 0.93879 0.98926 1.11211
1.20683 0.98308 0.92391 0.98088 1.20413 0.93549 0.96824 1.11911
1.19166 0.92964 0.93199 0.99476 1.20817 0.99253 0.92262 0.89786
1.60572 1.29802 1.23540 1.16725 1.21589 0.95362 0.86908 0.98331
0.90687 1.22304 0.98914 0.95870 1.01793 1.21474 0.99191 0.96772
0.97905 1.21559 0.97601 0.98049 0.97610 1.20741 0.96244 0.95087
0.95336 0.91287 1.22345 0.93336 1.00993 0.99569 1.23007 0.94359
1.01229 1.03131 1.22924 1.05311 0.91025 1.02734 1.21500 0.99214
0.95743 0.97128 1.20024 0.99396 0.89667 1.09529 0.92072 0.85699
0.87632 0.88145 0.90623 0.94931 0.83961 0.92185 0.91804 0.92091
0.92218 0.92172 0.91945 0.87877 0.88828 0.88983 0.89122 0.88960
0.91967 0.90946 0.86535
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16
2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16
3 Si 0.94 20.76 29.55 -169.99 -5.02 15.73 16
4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16
5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16
6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16
7 C -0.39 -11.09 9.49 30.89 0.29 -10.80 16
8 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16
9 O -0.18 -5.19 9.76 0.04 0.00 -5.19 16
10 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16
11 C -0.23 -5.15 9.17 -39.40 -0.36 -5.51 16
12 C -0.08 -1.43 10.04 -39.61 -0.40 -1.82 16
13 C -0.21 -3.60 9.70 -39.53 -0.38 -3.98 16
14 C -0.05 -0.85 5.39 -104.65 -0.56 -1.42 16
15 C 0.11 1.53 5.61 -4.97 -0.03 1.50 16
16 N -0.68 -8.85 6.24 -107.99 -0.67 -9.53 16
17 C 0.09 0.93 2.47 -67.71 -0.17 0.76 16
18 H 0.07 0.83 7.80 -51.93 -0.41 0.42 16
19 C -0.15 -1.35 5.17 -26.73 -0.14 -1.49 16
20 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16
21 C -0.11 -0.84 5.04 -26.73 -0.13 -0.98 16
22 C -0.06 -0.46 2.34 -90.62 -0.21 -0.68 16
23 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16
24 C -0.14 -1.18 5.15 -90.62 -0.47 -1.65 16
25 C -0.18 -1.43 10.18 -26.74 -0.27 -1.70 16
26 C -0.18 -1.32 9.73 -26.73 -0.26 -1.58 16
27 C -0.10 -0.98 4.79 -26.73 -0.13 -1.11 16
28 C -0.17 -3.61 9.65 -39.39 -0.38 -3.99 16
29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16
30 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16
31 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16
32 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16
33 H 0.08 1.09 8.00 -51.93 -0.42 0.67 16
34 H 0.03 0.42 7.38 -51.93 -0.38 0.03 16
35 H 0.34 4.37 8.46 -39.29 -0.33 4.03 16
36 H 0.06 0.56 7.45 -51.93 -0.39 0.18 16
37 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16
38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
39 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16
40 H 0.06 0.42 7.29 -51.93 -0.38 0.05 16
41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
42 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16
43 H 0.09 0.73 8.05 -51.93 -0.42 0.32 16
44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
45 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16
46 H 0.09 0.63 7.61 -51.93 -0.39 0.23 16
47 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
49 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16
LS Contribution 389.01 15.07 5.86 5.86
Total: -1.00 -30.02 389.01 -11.49 -41.51
By element:
Atomic # 1 Polarization: 15.81 SS G_CDS: -8.30 Total: 7.51 kcal
Atomic # 6 Polarization: -26.90 SS G_CDS: -4.11 Total: -31.02 kcal
Atomic # 7 Polarization: -34.50 SS G_CDS: 0.08 Total: -34.42 kcal
Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal
Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -30.02 -11.49 -41.51 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000089630866.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.091 kcal
(2) G-P(sol) polarization free energy of solvation -30.024 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.067 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.490 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.424 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds