Wall clock time and date at job start Tue Mar 31 2020 12:37:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31549 * 1
3 3 Si 1.86802 * 120.00081 * 2 1
4 4 H 1.48499 * 109.47509 * 269.99919 * 3 2 1
5 5 H 1.48504 * 109.47032 * 30.00301 * 3 2 1
6 6 H 1.48504 * 109.47304 * 149.99814 * 3 2 1
7 7 C 1.38656 * 120.00461 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00614 * 180.02562 * 7 2 1
9 9 O 1.34837 * 119.99592 * 0.02562 * 7 2 1
10 10 C 1.35746 * 116.99921 * 185.05999 * 9 7 2
11 11 C 1.38896 * 120.07058 * 354.48569 * 10 9 7
12 12 C 1.38079 * 119.93228 * 179.97438 * 11 10 9
13 13 C 1.38320 * 120.06892 * 359.75100 * 12 11 10
14 14 C 1.38283 * 120.13701 * 0.50913 * 13 12 11
15 15 C 1.50697 * 119.96715 * 179.76993 * 14 13 12
16 16 N 1.46906 * 109.47023 * 269.72083 * 15 14 13
17 17 C 1.46896 * 111.00336 * 179.97438 * 16 15 14
18 18 H 1.09002 * 109.46874 * 34.99672 * 17 16 15
19 19 C 1.53001 * 109.47025 * 275.00017 * 17 16 15
20 20 C 1.53005 * 109.46855 * 179.97438 * 19 17 16
21 21 C 1.53003 * 109.47076 * 60.00183 * 20 19 17
22 22 C 1.53000 * 109.46802 * 299.99841 * 21 20 19
23 23 H 1.08992 * 109.47019 * 299.99598 * 22 21 20
24 24 C 1.53003 * 109.46802 * 180.02562 * 22 21 20
25 25 C 1.52996 * 117.49702 * 128.61890 * 24 22 21
26 26 C 1.52995 * 60.00173 * 252.50914 * 25 24 22
27 27 C 1.52997 * 109.47285 * 60.00424 * 22 21 20
28 28 C 1.38124 * 120.06960 * 359.48879 * 14 13 12
29 29 H 0.96998 * 120.00432 * 0.02562 * 1 2 3
30 30 H 1.07999 * 120.03525 * 0.02562 * 11 10 9
31 31 H 1.07996 * 119.96672 * 180.02562 * 12 11 10
32 32 H 1.08001 * 119.93451 * 180.26919 * 13 12 11
33 33 H 1.08996 * 109.47626 * 149.72419 * 15 14 13
34 34 H 1.09004 * 109.47183 * 29.71725 * 15 14 13
35 35 H 1.00902 * 110.99901 * 56.04636 * 16 15 14
36 36 H 1.09006 * 109.47160 * 60.00048 * 19 17 16
37 37 H 1.09002 * 109.47539 * 299.99563 * 19 17 16
38 38 H 1.08992 * 109.47203 * 299.99743 * 20 19 17
39 39 H 1.09008 * 109.46874 * 179.97438 * 20 19 17
40 40 H 1.08994 * 109.46716 * 179.97438 * 21 20 19
41 41 H 1.09001 * 109.46738 * 59.99937 * 21 20 19
42 42 H 1.08998 * 115.54727 * 274.33269 * 24 22 21
43 43 H 1.08997 * 117.50179 * 0.02562 * 25 24 22
44 44 H 1.09007 * 117.49529 * 145.02020 * 25 24 22
45 45 H 1.09003 * 117.50532 * 252.50972 * 26 25 24
46 46 H 1.09006 * 117.51665 * 107.48237 * 26 25 24
47 47 H 1.09001 * 109.47501 * 59.99142 * 27 22 21
48 48 H 1.08995 * 109.47139 * 179.97438 * 27 22 21
49 49 H 1.07994 * 120.03481 * 180.28146 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2495 1.6177 0.0000
4 1 2.4971 2.0465 -1.4000
5 1 1.4470 2.6527 0.7001
6 1 3.5471 1.4402 0.7001
7 6 2.0089 -1.2007 -0.0005
8 1 3.0888 -1.2008 -0.0001
9 8 1.3347 -2.3685 -0.0016
10 6 2.0699 -3.5046 0.1046
11 6 3.4573 -3.4395 0.0927
12 6 4.2024 -4.5969 0.2015
13 6 3.5685 -5.8199 0.3273
14 6 2.1874 -5.8886 0.3341
15 6 1.5009 -7.2236 0.4662
16 7 1.2718 -7.7907 -0.8695
17 6 0.6032 -9.0956 -0.7799
18 1 -0.0935 -9.0900 0.0584
19 6 1.6495 -10.1912 -0.5661
20 6 0.9530 -11.5502 -0.4721
21 6 0.1878 -11.8219 -1.7688
22 6 -0.8585 -10.7263 -1.9826
23 1 -1.5550 -10.7205 -1.1442
24 6 -1.6242 -10.9983 -3.2790
25 6 -3.1526 -11.0003 -3.2096
26 6 -2.3929 -12.3171 -3.3821
27 6 -0.1620 -9.3673 -2.0766
28 6 1.4365 -4.7344 0.2257
29 1 -0.4851 0.8400 -0.0004
30 1 3.9528 -2.4844 -0.0006
31 1 5.2811 -4.5468 0.1927
32 1 4.1535 -6.7234 0.4166
33 1 0.5453 -7.0921 0.9738
34 1 2.1298 -7.8999 1.0451
35 1 2.1362 -7.8624 -1.3850
36 1 2.1944 -9.9979 0.3580
37 1 2.3463 -10.1969 -1.4043
38 1 0.2566 -11.5444 0.3664
39 1 1.6985 -12.3309 -0.3202
40 1 -0.3080 -12.7903 -1.7020
41 1 0.8843 -11.8278 -2.6073
42 1 -1.1617 -10.6130 -4.1877
43 1 -3.6127 -10.8075 -2.2405
44 1 -3.6961 -10.6161 -4.0729
45 1 -2.4365 -12.7993 -4.3587
46 1 -2.3528 -12.9912 -2.5264
47 1 0.5345 -9.3731 -2.9150
48 1 -0.9074 -8.5868 -2.2294
49 1 0.3580 -4.7883 0.2356
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000089630866.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:37
Heat of formation + Delta-G solvation = -19.212546 kcal
Electronic energy + Delta-G solvation = -25391.210672 eV
Core-core repulsion = 21896.602407 eV
Total energy + Delta-G solvation = -3494.608266 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-40.84090 -40.32323 -38.63054 -37.65799 -35.44163 -34.27279 -32.35937 -31.49815
-30.79731 -29.28143 -27.38577 -25.76239 -24.27644 -23.42893 -23.22859 -22.54725
-22.26277 -21.09131 -20.65062 -19.48462 -18.74500 -17.02039 -16.82383 -16.46984
-16.41449 -16.04608 -15.78149 -15.51769 -15.38557 -15.29205 -14.94594 -14.63730
-14.48450 -14.08104 -14.04386 -13.67306 -13.53204 -13.33459 -12.99853 -12.91333
-12.67090 -12.45479 -12.38377 -12.26689 -12.18852 -12.10168 -12.06634 -11.95207
-11.44761 -11.43781 -11.31668 -11.17117 -10.87390 -10.80000 -10.61201 -9.66764
-9.23218 -8.96100 -8.46142 -6.14806 0.54391 0.75928 1.34635 1.44424
1.52563 2.18183 2.78907 2.93586 3.11115 3.35432 3.50623 3.69225
3.84876 4.00787 4.06590 4.07842 4.12469 4.13965 4.15427 4.30526
4.36832 4.43034 4.47516 4.59999 4.60725 4.65066 4.68003 4.68773
4.76614 4.78111 4.81030 4.83953 5.03692 5.10655 5.11113 5.13773
5.16857 5.22758 5.28421 5.29340 5.32247 5.36133 5.38431 5.52084
5.61375 5.68231 5.74871 5.79138 6.03864 6.13788 6.27371 6.52999
6.98380 7.80708 8.77443
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.018918 B = 0.002310 C = 0.002104
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1479.695771 B =12120.810680 C =13304.004978
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C -0.025 4.025
3 Si 1.020 2.980
4 H -0.263 1.263
5 H -0.271 1.271
6 H -0.252 1.252
7 C -0.413 4.413
8 H 0.102 0.898
9 O -0.235 6.235
10 C 0.111 3.889
11 C -0.245 4.245
12 C -0.071 4.071
13 C -0.183 4.183
14 C -0.037 4.037
15 C 0.114 3.886
16 N -0.692 5.692
17 C 0.091 3.909
18 H 0.070 0.930
19 C -0.142 4.142
20 C -0.113 4.113
21 C -0.106 4.106
22 C -0.049 4.049
23 H 0.065 0.935
24 C -0.154 4.154
25 C -0.190 4.190
26 C -0.171 4.171
27 C -0.094 4.094
28 C -0.184 4.184
29 H 0.272 0.728
30 H 0.117 0.883
31 H 0.146 0.854
32 H 0.147 0.853
33 H 0.069 0.931
34 H 0.061 0.939
35 H 0.346 0.654
36 H 0.062 0.938
37 H 0.066 0.934
38 H 0.061 0.939
39 H 0.071 0.929
40 H 0.070 0.930
41 H 0.062 0.938
42 H 0.099 0.901
43 H 0.091 0.909
44 H 0.093 0.907
45 H 0.099 0.901
46 H 0.100 0.900
47 H 0.060 0.940
48 H 0.049 0.951
49 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.084 -25.872 -2.833 26.209
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.561 5.561
2 C -0.222 4.222
3 Si 0.839 3.161
4 H -0.188 1.188
5 H -0.196 1.196
6 H -0.176 1.176
7 C -0.489 4.489
8 H 0.119 0.881
9 O -0.142 6.142
10 C 0.061 3.939
11 C -0.264 4.264
12 C -0.089 4.089
13 C -0.202 4.202
14 C -0.038 4.038
15 C -0.014 4.014
16 N -0.322 5.322
17 C -0.018 4.018
18 H 0.088 0.912
19 C -0.181 4.181
20 C -0.151 4.151
21 C -0.144 4.144
22 C -0.067 4.067
23 H 0.083 0.917
24 C -0.172 4.172
25 C -0.227 4.227
26 C -0.208 4.208
27 C -0.132 4.132
28 C -0.204 4.204
29 H 0.081 0.919
30 H 0.135 0.865
31 H 0.164 0.836
32 H 0.165 0.835
33 H 0.088 0.912
34 H 0.079 0.921
35 H 0.165 0.835
36 H 0.081 0.919
37 H 0.085 0.915
38 H 0.080 0.920
39 H 0.090 0.910
40 H 0.088 0.912
41 H 0.080 0.920
42 H 0.117 0.883
43 H 0.110 0.890
44 H 0.111 0.889
45 H 0.117 0.883
46 H 0.118 0.882
47 H 0.079 0.921
48 H 0.068 0.932
49 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 2.083 -25.346 -2.944 25.601
hybrid contribution 0.560 0.831 0.189 1.020
sum 2.643 -24.515 -2.754 24.810
Atomic orbital electron populations
1.70191 1.08080 1.28756 1.49083 1.26618 0.96866 1.02806 0.95938
0.84576 0.77797 0.74486 0.79261 1.18787 1.19577 1.17586 1.21828
0.92502 0.81472 1.53113 0.88117 1.83948 1.35982 1.12597 1.81651
1.19924 0.91706 0.87879 0.94406 1.21300 0.93003 1.00294 1.11845
1.21134 1.00212 0.91374 0.96214 1.20979 0.93307 0.98060 1.07807
1.19591 0.93632 0.93531 0.97012 1.20750 0.99191 0.90678 0.90829
1.60499 1.30219 1.25364 1.16115 1.21589 0.95629 0.86378 0.98225
0.91219 1.22218 0.98282 0.95692 1.01952 1.21467 0.99416 0.96334
0.97886 1.21527 0.97250 0.97983 0.97606 1.20661 0.96347 0.94409
0.95333 0.91677 1.22337 0.93418 1.02165 0.99273 1.23065 0.94285
1.02235 1.03154 1.22984 1.03727 0.90555 1.03508 1.21440 0.98632
0.96163 0.96941 1.20202 0.99210 0.90316 1.10692 0.91879 0.86487
0.83636 0.83509 0.91237 0.92100 0.83548 0.91934 0.91531 0.92018
0.90986 0.91157 0.91955 0.88328 0.89014 0.88896 0.88276 0.88203
0.92149 0.93227 0.88072
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -58.03 13.67 21.61 0.30 -57.73 16
2 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16
3 Si 1.02 43.70 29.55 68.60 2.03 45.73 16
4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16
5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16
6 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16
7 C -0.41 -24.68 9.49 67.92 0.64 -24.04 16
8 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16
9 O -0.23 -14.63 9.76 -22.77 -0.22 -14.86 16
10 C 0.11 5.73 6.65 22.58 0.15 5.88 16
11 C -0.24 -10.90 9.17 22.39 0.21 -10.69 16
12 C -0.07 -2.44 10.04 22.25 0.22 -2.22 16
13 C -0.18 -5.58 9.70 22.30 0.22 -5.37 16
14 C -0.04 -1.27 5.39 -19.88 -0.11 -1.37 16
15 C 0.11 2.99 5.61 85.55 0.48 3.47 16
16 N -0.69 -16.92 6.24 -495.57 -3.09 -20.01 16
17 C 0.09 1.77 2.47 44.92 0.11 1.88 16
18 H 0.07 1.44 7.80 -2.39 -0.02 1.42 16
19 C -0.14 -2.13 5.17 30.60 0.16 -1.98 16
20 C -0.11 -1.42 5.92 30.60 0.18 -1.24 16
21 C -0.11 -1.36 5.04 30.60 0.15 -1.20 16
22 C -0.05 -0.76 2.34 -10.79 -0.03 -0.78 16
23 H 0.06 1.07 7.90 -2.39 -0.02 1.06 16
24 C -0.15 -2.37 5.15 -10.79 -0.06 -2.43 16
25 C -0.19 -2.89 10.18 30.59 0.31 -2.58 16
26 C -0.17 -2.18 9.73 30.59 0.30 -1.88 16
27 C -0.09 -1.82 4.79 30.59 0.15 -1.67 16
28 C -0.18 -8.26 9.65 22.39 0.22 -8.04 16
29 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16
30 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16
31 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16
32 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16
33 H 0.07 1.93 8.00 -2.39 -0.02 1.91 16
34 H 0.06 1.29 7.38 -2.39 -0.02 1.28 16
35 H 0.35 7.93 8.46 -89.69 -0.76 7.17 16
36 H 0.06 0.93 7.45 -2.38 -0.02 0.91 16
37 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16
38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
39 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16
40 H 0.07 0.79 7.29 -2.39 -0.02 0.77 16
41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16
42 H 0.10 1.60 8.11 -2.39 -0.02 1.58 16
43 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16
44 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16
45 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16
46 H 0.10 1.13 7.61 -2.38 -0.02 1.11 16
47 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
48 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16
49 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16
Total: -1.00 -70.76 389.01 2.95 -67.81
By element:
Atomic # 1 Polarization: 34.15 SS G_CDS: 0.17 Total: 34.32 kcal
Atomic # 6 Polarization: -59.04 SS G_CDS: 3.77 Total: -55.27 kcal
Atomic # 7 Polarization: -74.94 SS G_CDS: -2.80 Total: -77.74 kcal
Atomic # 8 Polarization: -14.63 SS G_CDS: -0.22 Total: -14.86 kcal
Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal
Total: -70.76 2.95 -67.81 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000089630866.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.601 kcal
(2) G-P(sol) polarization free energy of solvation -70.764 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.162 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.814 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.213 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds