Wall clock time and date at job start Tue Mar 31 2020 11:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99804 * 2 1 4 4 C 1.50708 * 109.46882 * 270.00194 * 3 2 1 5 5 H 1.07994 * 120.00129 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99702 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00238 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00040 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47022 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47261 * 119.99949 * 8 6 4 11 11 H 1.48498 * 109.47562 * 240.00125 * 8 6 4 12 12 C 1.39672 * 120.00235 * 180.02562 * 2 1 3 13 13 C 1.38921 * 120.07315 * 359.97438 * 12 2 1 14 14 C 1.38109 * 119.92317 * 179.97438 * 13 12 2 15 15 C 1.38284 * 120.07218 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.91998 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46921 * 89.99972 * 16 15 14 18 18 C 1.46906 * 110.99793 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.46978 * 180.02562 * 18 17 16 20 20 C 1.50705 * 109.47244 * 180.02562 * 19 18 17 21 21 N 1.30520 * 126.33877 * 305.02158 * 20 19 18 22 22 N 1.28597 * 109.67099 * 179.97438 * 21 20 19 23 23 C 1.30525 * 109.67154 * 359.97438 * 22 21 20 24 24 N 1.35486 * 126.34924 * 124.70828 * 20 19 18 25 25 H 0.97003 * 126.97989 * 0.04222 * 24 20 19 26 26 C 1.38278 * 120.15335 * 0.27098 * 15 14 13 27 27 C 1.38105 * 120.07448 * 359.45469 * 26 15 14 28 28 H 1.08999 * 109.46935 * 269.99692 * 1 2 3 29 29 H 1.08993 * 109.47432 * 30.00006 * 1 2 3 30 30 H 1.09008 * 109.46940 * 150.00354 * 1 2 3 31 31 H 1.08992 * 109.47368 * 29.99847 * 3 2 1 32 32 H 1.08995 * 109.47116 * 150.00763 * 3 2 1 33 33 H 0.97003 * 119.99951 * 180.02562 * 7 6 4 34 34 H 1.07996 * 120.03799 * 359.96012 * 13 12 2 35 35 H 1.07998 * 119.95621 * 179.97438 * 14 13 12 36 36 H 1.09002 * 109.47060 * 210.00153 * 16 15 14 37 37 H 1.09001 * 109.47380 * 330.00241 * 16 15 14 38 38 H 1.00899 * 111.00283 * 303.95218 * 17 16 15 39 39 H 1.08995 * 109.47087 * 299.99901 * 18 17 16 40 40 H 1.09002 * 109.46903 * 59.99922 * 18 17 16 41 41 H 1.09005 * 109.46860 * 299.99699 * 19 18 17 42 42 H 1.09002 * 109.47639 * 60.00040 * 19 18 17 43 43 H 1.08000 * 126.34703 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.96559 * 179.70085 * 26 15 14 45 45 H 1.08000 * 120.03659 * 180.26635 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1268 2.8774 -1.6728 7 7 3.5550 3.6171 -0.6732 8 14 3.4387 3.4164 -3.4340 9 1 2.8605 2.4165 -4.3674 10 1 2.8016 4.7372 -3.6676 11 1 4.9012 3.5241 -3.6671 12 6 2.1634 -1.2096 -0.0005 13 6 1.4704 -2.4136 -0.0005 14 6 2.1642 -3.6078 -0.0016 15 6 3.5470 -3.6059 -0.0021 16 6 4.3005 -4.9110 -0.0027 17 7 4.5448 -5.3347 -1.3879 18 6 5.2796 -6.6062 -1.4277 19 6 5.5152 -7.0137 -2.8834 20 6 6.2684 -8.3183 -2.9243 21 7 7.4087 -8.5716 -2.3419 22 7 7.7597 -9.7843 -2.5866 23 6 6.8590 -10.3599 -3.3356 24 7 5.8846 -9.4474 -3.5674 25 1 5.0771 -9.5758 -4.0894 26 6 4.2399 -2.4092 0.0040 27 6 3.5525 -1.2114 -0.0006 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6084 2.0283 0.5138 32 1 3.1499 1.1384 0.5137 33 1 4.0318 4.4430 -0.8505 34 1 0.3905 -2.4157 0.0005 35 1 1.6259 -4.5441 -0.0012 36 1 5.2531 -4.7807 0.5108 37 1 3.7116 -5.6708 0.5111 38 1 3.6802 -5.4001 -1.9039 39 1 6.2389 -6.4872 -0.9243 40 1 4.6978 -7.3779 -0.9235 41 1 4.5559 -7.1325 -3.3873 42 1 6.0971 -6.2419 -3.3873 43 1 6.8843 -11.3760 -3.7006 44 1 5.3199 -2.4113 0.0085 45 1 4.0944 -0.2772 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119041509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:55 Heat of formation + Delta-G solvation = 107.180963 kcal Electronic energy + Delta-G solvation = -24464.667783 eV Core-core repulsion = 20904.292759 eV Total energy + Delta-G solvation = -3560.375024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.46178 -39.06546 -37.01800 -35.50570 -34.17595 -33.01696 -32.53171 -30.44529 -30.20594 -28.37620 -27.79494 -25.69785 -24.15825 -23.17406 -23.03529 -22.02153 -21.55364 -21.29555 -19.58430 -18.66469 -16.80340 -16.52282 -16.41190 -15.83289 -15.63028 -15.24040 -15.13745 -14.66112 -14.34251 -14.02453 -13.74504 -13.64358 -13.26977 -12.93817 -12.88712 -12.58687 -12.16341 -11.96081 -11.89269 -11.71490 -11.49300 -11.40290 -11.25445 -11.21654 -10.94153 -10.72181 -10.70368 -10.69356 -10.26150 -9.89127 -9.75580 -9.55871 -8.86481 -8.50972 -8.46150 -8.26733 -6.47433 -6.01958 -4.17310 1.41662 2.10979 2.18725 2.37363 2.53738 3.25832 3.34095 3.38697 3.82783 4.13529 4.19736 4.41288 4.44285 4.48440 4.69548 4.85019 4.99471 5.08060 5.20791 5.21723 5.29026 5.30410 5.54524 5.56533 5.64063 5.72837 5.79319 5.80760 5.85204 6.02263 6.07711 6.26679 6.39108 6.43834 6.63471 6.63701 6.86472 6.96389 7.03362 7.17315 7.26785 7.34253 7.39020 7.60336 7.81258 8.15280 8.26082 8.36593 8.48106 8.91908 9.49630 10.95698 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.002205 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.261419 B =12697.477244 C =13748.835571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.615 5.615 3 C 0.248 3.752 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.242 3.758 13 C -0.223 4.223 14 C -0.068 4.068 15 C -0.174 4.174 16 C 0.118 3.882 17 N -0.683 5.683 18 C 0.067 3.933 19 C -0.033 4.033 20 C 0.187 3.813 21 N -0.288 5.288 22 N -0.297 5.297 23 C 0.148 3.852 24 N -0.584 5.584 25 H 0.429 0.571 26 C -0.049 4.049 27 C -0.188 4.188 28 H 0.035 0.965 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.037 0.963 33 H 0.263 0.737 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.028 0.972 38 H 0.340 0.660 39 H 0.087 0.913 40 H 0.026 0.974 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.221 0.779 44 H 0.113 0.887 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 -24.388 -3.738 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.321 5.321 3 C 0.128 3.872 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.135 3.865 13 C -0.246 4.246 14 C -0.088 4.088 15 C -0.177 4.177 16 C -0.010 4.010 17 N -0.314 5.314 18 C -0.063 4.063 19 C -0.073 4.073 20 C -0.083 4.083 21 N -0.129 5.129 22 N -0.136 5.136 23 C -0.141 4.141 24 N -0.197 5.197 25 H 0.268 0.732 26 C -0.069 4.069 27 C -0.211 4.211 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.046 0.954 38 H 0.158 0.842 39 H 0.105 0.895 40 H 0.045 0.955 41 H 0.099 0.901 42 H 0.126 0.874 43 H 0.237 0.763 44 H 0.131 0.869 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.257 -23.400 -2.834 23.573 hybrid contribution -2.158 -0.594 -1.932 2.957 sum -1.900 -23.994 -4.767 24.537 Atomic orbital electron populations 1.21471 0.81551 1.01895 0.99662 1.47106 1.04357 1.04649 1.75945 1.19301 0.92115 0.78734 0.97038 1.21606 1.36298 1.06361 0.92639 0.92205 1.24970 0.95424 0.96328 0.97426 1.69940 1.38359 1.14373 1.30696 0.86464 0.78090 0.78398 0.84655 1.19735 1.21003 1.20796 1.17972 0.91555 0.85964 0.91038 1.20511 0.98910 0.91399 1.13776 1.20491 0.93303 0.96446 0.98527 1.19152 0.93050 0.93845 1.11665 1.20637 0.98925 0.93368 0.88099 1.60501 1.26825 1.29349 1.14769 1.21836 1.00087 0.90281 0.94086 1.20040 0.98799 0.88963 0.99490 1.24983 0.95592 0.91097 0.96596 1.74306 1.09885 1.08279 1.20446 1.74291 1.23641 1.01454 1.14258 1.26520 0.87502 0.98381 1.01724 1.44189 1.21976 1.11475 1.42059 0.73152 1.20663 0.98850 0.91281 0.96098 1.20911 0.92636 0.98877 1.08627 0.94636 0.91455 0.92730 0.95207 0.94556 0.92696 0.86993 0.87826 0.90701 0.95368 0.84209 0.89462 0.95538 0.90091 0.87356 0.76252 0.86889 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.19 59.85 0.61 2.31 16 2 N -0.62 -13.04 2.99 -181.00 -0.54 -13.58 16 3 C 0.25 6.18 4.91 -5.19 -0.03 6.16 16 4 C -0.53 -14.41 9.39 -34.44 -0.32 -14.73 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 7 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.24 4.83 6.55 -83.79 -0.55 4.29 16 13 C -0.22 -3.77 9.21 -39.38 -0.36 -4.13 16 14 C -0.07 -1.01 9.69 -39.61 -0.38 -1.40 16 15 C -0.17 -2.60 5.39 -104.59 -0.56 -3.16 16 16 C 0.12 1.41 5.81 -4.97 -0.03 1.38 16 17 N -0.68 -7.35 6.49 -115.05 -0.75 -8.10 16 18 C 0.07 0.62 5.65 -3.82 -0.02 0.59 16 19 C -0.03 -0.24 6.10 -27.88 -0.17 -0.41 16 20 C 0.19 1.65 7.56 -154.99 -1.17 0.47 16 21 N -0.29 -3.60 12.19 32.80 0.40 -3.20 16 22 N -0.30 -3.46 12.21 29.69 0.36 -3.10 16 23 C 0.15 0.98 13.19 -89.94 -1.19 -0.20 16 24 N -0.58 -3.20 6.20 -11.36 -0.07 -3.27 16 25 H 0.43 0.65 8.96 -40.82 -0.37 0.29 16 26 C -0.05 -0.85 9.69 -39.62 -0.38 -1.23 16 27 C -0.19 -3.78 9.21 -39.38 -0.36 -4.14 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.05 0.83 6.20 -51.92 -0.32 0.51 16 31 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.04 0.96 6.20 -51.93 -0.32 0.64 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.11 1.70 6.14 -52.49 -0.32 1.38 16 35 H 0.10 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 38 H 0.34 3.36 8.72 -39.29 -0.34 3.02 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.22 0.41 8.06 -52.49 -0.42 -0.02 16 44 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 45 H 0.13 2.93 6.14 -52.49 -0.32 2.61 16 LS Contribution 377.91 15.07 5.70 5.70 Total: -1.00 -33.49 377.91 -10.81 -44.29 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.60 Total: 2.48 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -5.02 Total: -12.62 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.14 Total: -56.12 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.49 -10.81 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119041509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.475 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds