Wall clock time and date at job start Tue Mar 31 2020 11:04:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46497 * 119.99804 * 2 1
4 4 C 1.50708 * 109.46882 * 270.00194 * 3 2 1
5 5 H 1.07994 * 120.00129 * 359.97438 * 4 3 2
6 6 C 1.37873 * 119.99702 * 180.02562 * 4 3 2
7 7 N 1.31517 * 120.00238 * 0.02562 * 6 4 3
8 8 Si 1.86797 * 120.00040 * 179.97438 * 6 4 3
9 9 H 1.48506 * 109.47022 * 0.02562 * 8 6 4
10 10 H 1.48497 * 109.47261 * 119.99949 * 8 6 4
11 11 H 1.48498 * 109.47562 * 240.00125 * 8 6 4
12 12 C 1.39672 * 120.00235 * 180.02562 * 2 1 3
13 13 C 1.38921 * 120.07315 * 359.97438 * 12 2 1
14 14 C 1.38109 * 119.92317 * 179.97438 * 13 12 2
15 15 C 1.38284 * 120.07218 * 0.02562 * 14 13 12
16 16 C 1.50701 * 119.91998 * 179.97438 * 15 14 13
17 17 N 1.46901 * 109.46921 * 89.99972 * 16 15 14
18 18 C 1.46906 * 110.99793 * 179.97438 * 17 16 15
19 19 C 1.52995 * 109.46978 * 180.02562 * 18 17 16
20 20 C 1.50705 * 109.47244 * 180.02562 * 19 18 17
21 21 N 1.30520 * 126.33877 * 305.02158 * 20 19 18
22 22 N 1.28597 * 109.67099 * 179.97438 * 21 20 19
23 23 C 1.30525 * 109.67154 * 359.97438 * 22 21 20
24 24 N 1.35486 * 126.34924 * 124.70828 * 20 19 18
25 25 H 0.97003 * 126.97989 * 0.04222 * 24 20 19
26 26 C 1.38278 * 120.15335 * 0.27098 * 15 14 13
27 27 C 1.38105 * 120.07448 * 359.45469 * 26 15 14
28 28 H 1.08999 * 109.46935 * 269.99692 * 1 2 3
29 29 H 1.08993 * 109.47432 * 30.00006 * 1 2 3
30 30 H 1.09008 * 109.46940 * 150.00354 * 1 2 3
31 31 H 1.08992 * 109.47368 * 29.99847 * 3 2 1
32 32 H 1.08995 * 109.47116 * 150.00763 * 3 2 1
33 33 H 0.97003 * 119.99951 * 180.02562 * 7 6 4
34 34 H 1.07996 * 120.03799 * 359.96012 * 13 12 2
35 35 H 1.07998 * 119.95621 * 179.97438 * 14 13 12
36 36 H 1.09002 * 109.47060 * 210.00153 * 16 15 14
37 37 H 1.09001 * 109.47380 * 330.00241 * 16 15 14
38 38 H 1.00899 * 111.00283 * 303.95218 * 17 16 15
39 39 H 1.08995 * 109.47087 * 299.99901 * 18 17 16
40 40 H 1.09002 * 109.46903 * 59.99922 * 18 17 16
41 41 H 1.09005 * 109.46860 * 299.99699 * 19 18 17
42 42 H 1.09002 * 109.47639 * 60.00040 * 19 18 17
43 43 H 1.08000 * 126.34703 * 179.97438 * 23 22 21
44 44 H 1.08001 * 119.96559 * 179.70085 * 26 15 14
45 45 H 1.08000 * 120.03659 * 180.26635 * 27 26 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4486 1.7038 -1.4209
5 1 2.0980 1.0958 -2.2417
6 6 3.1268 2.8774 -1.6728
7 7 3.5550 3.6171 -0.6732
8 14 3.4387 3.4164 -3.4340
9 1 2.8605 2.4165 -4.3674
10 1 2.8016 4.7372 -3.6676
11 1 4.9012 3.5241 -3.6671
12 6 2.1634 -1.2096 -0.0005
13 6 1.4704 -2.4136 -0.0005
14 6 2.1642 -3.6078 -0.0016
15 6 3.5470 -3.6059 -0.0021
16 6 4.3005 -4.9110 -0.0027
17 7 4.5448 -5.3347 -1.3879
18 6 5.2796 -6.6062 -1.4277
19 6 5.5152 -7.0137 -2.8834
20 6 6.2684 -8.3183 -2.9243
21 7 7.4087 -8.5716 -2.3419
22 7 7.7597 -9.7843 -2.5866
23 6 6.8590 -10.3599 -3.3356
24 7 5.8846 -9.4474 -3.5674
25 1 5.0771 -9.5758 -4.0894
26 6 4.2399 -2.4092 0.0040
27 6 3.5525 -1.2114 -0.0006
28 1 -0.3633 -0.0001 1.0277
29 1 -0.3634 0.8899 -0.5138
30 1 -0.3633 -0.8901 -0.5138
31 1 1.6084 2.0283 0.5138
32 1 3.1499 1.1384 0.5137
33 1 4.0318 4.4430 -0.8505
34 1 0.3905 -2.4157 0.0005
35 1 1.6259 -4.5441 -0.0012
36 1 5.2531 -4.7807 0.5108
37 1 3.7116 -5.6708 0.5111
38 1 3.6802 -5.4001 -1.9039
39 1 6.2389 -6.4872 -0.9243
40 1 4.6978 -7.3779 -0.9235
41 1 4.5559 -7.1325 -3.3873
42 1 6.0971 -6.2419 -3.3873
43 1 6.8843 -11.3760 -3.7006
44 1 5.3199 -2.4113 0.0085
45 1 4.0944 -0.2772 -0.0001
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000119041509.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:04:54
Heat of formation + Delta-G solvation = 86.093278 kcal
Electronic energy + Delta-G solvation = -24465.582214 eV
Core-core repulsion = 20904.292759 eV
Total energy + Delta-G solvation = -3561.289455 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.175 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-44.05869 -40.43485 -38.09611 -36.77355 -34.88742 -34.68865 -33.59598 -31.85729
-31.29280 -29.66552 -29.21187 -27.03068 -25.66557 -24.06431 -23.73937 -23.30836
-22.97130 -21.92369 -20.98463 -19.19929 -18.62830 -18.11644 -17.29702 -16.89558
-16.59962 -16.26709 -16.00570 -15.99704 -15.68781 -15.32731 -15.12112 -14.65226
-14.44417 -14.26758 -14.05572 -13.94248 -13.54819 -13.17252 -13.13645 -13.01010
-12.68943 -12.62790 -12.58202 -12.53736 -12.26010 -12.18566 -11.86838 -11.78863
-11.69910 -11.38582 -11.33361 -10.63972 -10.40888 -10.22639 -9.63725 -9.29224
-8.35229 -7.78301 -6.36499 0.74401 0.83957 0.90782 1.36645 1.38627
1.50627 1.87999 1.92653 2.35202 2.65471 3.01961 3.07088 3.33400
3.65123 3.93774 4.08303 4.10852 4.16326 4.22161 4.27047 4.42810
4.46741 4.48731 4.51836 4.64458 4.68625 4.75077 4.78810 4.89694
4.92640 4.98892 5.04345 5.09487 5.15150 5.19346 5.22956 5.35882
5.61489 5.68531 5.72062 5.95443 6.08148 6.08933 6.25196 6.31448
6.51900 6.57452 6.84283 6.96349 7.35379 7.74778 8.84194
Molecular weight = 315.18amu
Principal moments of inertia in cm(-1)
A = 0.016049 B = 0.002205 C = 0.002036
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1744.261419 B =12697.477244 C =13748.835571
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.098 3.902
2 N -0.632 5.632
3 C 0.265 3.735
4 C -0.538 4.538
5 H 0.050 0.950
6 C 0.010 3.990
7 N -0.927 5.927
8 Si 0.962 3.038
9 H -0.269 1.269
10 H -0.274 1.274
11 H -0.278 1.278
12 C 0.212 3.788
13 C -0.216 4.216
14 C -0.058 4.058
15 C -0.159 4.159
16 C 0.122 3.878
17 N -0.692 5.692
18 C 0.076 3.924
19 C -0.025 4.025
20 C 0.186 3.814
21 N -0.341 5.341
22 N -0.357 5.357
23 C 0.170 3.830
24 N -0.567 5.567
25 H 0.449 0.551
26 C -0.057 4.057
27 C -0.218 4.218
28 H 0.052 0.948
29 H 0.055 0.945
30 H 0.080 0.920
31 H 0.009 0.991
32 H 0.010 0.990
33 H 0.267 0.733
34 H 0.134 0.866
35 H 0.146 0.854
36 H 0.070 0.930
37 H 0.050 0.950
38 H 0.349 0.651
39 H 0.064 0.936
40 H 0.036 0.964
41 H 0.114 0.886
42 H 0.098 0.902
43 H 0.266 0.734
44 H 0.118 0.882
45 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.470 -27.752 -5.490 28.502
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.045 4.045
2 N -0.340 5.340
3 C 0.143 3.857
4 C -0.577 4.577
5 H 0.068 0.932
6 C -0.189 4.189
7 N -0.567 5.567
8 Si 0.787 3.213
9 H -0.193 1.193
10 H -0.200 1.200
11 H -0.204 1.204
12 C 0.107 3.893
13 C -0.239 4.239
14 C -0.077 4.077
15 C -0.161 4.161
16 C -0.006 4.006
17 N -0.324 5.324
18 C -0.054 4.054
19 C -0.065 4.065
20 C -0.086 4.086
21 N -0.182 5.182
22 N -0.195 5.195
23 C -0.120 4.120
24 N -0.182 5.182
25 H 0.293 0.707
26 C -0.076 4.076
27 C -0.241 4.241
28 H 0.070 0.930
29 H 0.074 0.926
30 H 0.098 0.902
31 H 0.027 0.973
32 H 0.028 0.972
33 H 0.076 0.924
34 H 0.152 0.848
35 H 0.164 0.836
36 H 0.088 0.912
37 H 0.068 0.932
38 H 0.168 0.832
39 H 0.083 0.917
40 H 0.054 0.946
41 H 0.132 0.868
42 H 0.116 0.884
43 H 0.282 0.718
44 H 0.136 0.864
45 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -1.540 -26.807 -4.597 27.242
hybrid contribution -1.586 0.265 -1.375 2.116
sum -3.126 -26.543 -5.972 27.385
Atomic orbital electron populations
1.21605 0.79364 1.02581 1.00937 1.46954 1.05630 1.03690 1.77685
1.18777 0.91071 0.80365 0.95459 1.21799 1.36202 1.06379 0.93318
0.93193 1.25807 0.95154 0.96420 1.01543 1.70049 1.39061 1.14841
1.32766 0.85437 0.77983 0.78184 0.79656 1.19344 1.19975 1.20418
1.18252 0.91564 0.86624 0.92872 1.20796 1.00067 0.90626 1.12407
1.20925 0.93193 0.97328 0.96287 1.19482 0.93609 0.94157 1.08884
1.20573 0.98666 0.92199 0.89186 1.60384 1.27492 1.30514 1.14010
1.21705 0.98809 0.89669 0.95261 1.19997 1.00041 0.88082 0.98419
1.25080 0.94936 0.92185 0.96394 1.74194 1.12018 1.09337 1.22652
1.74183 1.26273 1.01884 1.17203 1.27348 0.86011 0.99567 0.99076
1.44101 1.22489 1.10166 1.41458 0.70701 1.20793 0.99293 0.91320
0.96183 1.20776 0.93307 0.98476 1.11520 0.92988 0.92594 0.90151
0.97298 0.97216 0.92441 0.84800 0.83613 0.91188 0.93186 0.83195
0.91742 0.94597 0.86794 0.88369 0.71803 0.86413 0.88966
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 3.35 10.19 127.77 1.30 4.65 16
2 N -0.63 -27.57 2.99 -726.55 -2.17 -29.74 16
3 C 0.27 14.04 4.91 85.64 0.42 14.46 16
4 C -0.54 -30.44 9.39 25.60 0.24 -30.20 16
5 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16
6 C 0.01 0.55 5.46 84.65 0.46 1.02 16
7 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16
8 Si 0.96 44.46 29.54 68.60 2.03 46.49 16
9 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16
10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16
11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16
12 C 0.21 8.56 6.55 38.22 0.25 8.81 16
13 C -0.22 -6.79 9.21 22.40 0.21 -6.59 16
14 C -0.06 -1.51 9.69 22.25 0.22 -1.30 16
15 C -0.16 -4.37 5.39 -19.84 -0.11 -4.48 16
16 C 0.12 2.58 5.81 85.56 0.50 3.08 16
17 N -0.69 -13.01 6.49 -517.92 -3.36 -16.37 16
18 C 0.08 1.23 5.65 86.30 0.49 1.71 16
19 C -0.03 -0.32 6.10 29.85 0.18 -0.13 16
20 C 0.19 2.94 7.56 137.98 1.04 3.99 16
21 N -0.34 -8.46 12.19 -50.15 -0.61 -9.07 16
22 N -0.36 -8.08 12.21 -59.99 -0.73 -8.82 16
23 C 0.17 1.82 13.19 180.11 2.37 4.20 16
24 N -0.57 -4.50 6.20 -189.86 -1.18 -5.68 16
25 H 0.45 -0.43 8.96 -92.71 -0.83 -1.26 16
26 C -0.06 -1.95 9.69 22.25 0.22 -1.74 16
27 C -0.22 -9.21 9.21 22.40 0.21 -9.00 16
28 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16
29 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16
30 H 0.08 2.28 6.20 -2.38 -0.01 2.26 16
31 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16
32 H 0.01 0.57 6.20 -2.39 -0.01 0.55 16
33 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16
34 H 0.13 3.58 6.14 -2.91 -0.02 3.56 16
35 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16
36 H 0.07 1.58 8.08 -2.39 -0.02 1.56 16
37 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16
38 H 0.35 5.54 8.72 -89.69 -0.78 4.76 16
39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
40 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16
41 H 0.11 0.64 8.14 -2.38 -0.02 0.63 16
42 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16
43 H 0.27 -0.10 8.06 -2.91 -0.02 -0.13 16
44 H 0.12 3.82 8.06 -2.91 -0.02 3.79 16
45 H 0.09 4.54 6.14 -2.91 -0.02 4.52 16
Total: -1.00 -77.99 377.91 1.66 -76.33
By element:
Atomic # 1 Polarization: 13.67 SS G_CDS: -0.60 Total: 13.07 kcal
Atomic # 6 Polarization: -19.52 SS G_CDS: 8.00 Total: -11.53 kcal
Atomic # 7 Polarization: -116.59 SS G_CDS: -7.77 Total: -124.36 kcal
Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal
Total: -77.99 1.66 -76.33 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000119041509.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 162.424 kcal
(2) G-P(sol) polarization free energy of solvation -77.989 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.435 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.331 kcal
(6) G-S(sol) free energy of system = (1) + (5) 86.093 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds