Wall clock time and date at job start Tue Mar 31 2020 11:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99804 * 2 1 4 4 C 1.50708 * 109.46882 * 270.00194 * 3 2 1 5 5 H 1.07994 * 120.00129 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99702 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00238 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00040 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47022 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47261 * 119.99949 * 8 6 4 11 11 H 1.48498 * 109.47562 * 240.00125 * 8 6 4 12 12 C 1.39672 * 120.00235 * 180.02562 * 2 1 3 13 13 C 1.38921 * 120.07315 * 359.97438 * 12 2 1 14 14 C 1.38109 * 119.92317 * 179.97438 * 13 12 2 15 15 C 1.38284 * 120.07218 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.91998 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46921 * 89.99972 * 16 15 14 18 18 C 1.46906 * 110.99793 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.46978 * 180.02562 * 18 17 16 20 20 C 1.50705 * 109.47244 * 180.02562 * 19 18 17 21 21 N 1.30520 * 126.33877 * 305.02158 * 20 19 18 22 22 N 1.28597 * 109.67099 * 179.97438 * 21 20 19 23 23 C 1.30525 * 109.67154 * 359.97438 * 22 21 20 24 24 N 1.35486 * 126.34924 * 124.70828 * 20 19 18 25 25 H 0.97003 * 126.97989 * 0.04222 * 24 20 19 26 26 C 1.38278 * 120.15335 * 0.27098 * 15 14 13 27 27 C 1.38105 * 120.07448 * 359.45469 * 26 15 14 28 28 H 1.08999 * 109.46935 * 269.99692 * 1 2 3 29 29 H 1.08993 * 109.47432 * 30.00006 * 1 2 3 30 30 H 1.09008 * 109.46940 * 150.00354 * 1 2 3 31 31 H 1.08992 * 109.47368 * 29.99847 * 3 2 1 32 32 H 1.08995 * 109.47116 * 150.00763 * 3 2 1 33 33 H 0.97003 * 119.99951 * 180.02562 * 7 6 4 34 34 H 1.07996 * 120.03799 * 359.96012 * 13 12 2 35 35 H 1.07998 * 119.95621 * 179.97438 * 14 13 12 36 36 H 1.09002 * 109.47060 * 210.00153 * 16 15 14 37 37 H 1.09001 * 109.47380 * 330.00241 * 16 15 14 38 38 H 1.00899 * 111.00283 * 303.95218 * 17 16 15 39 39 H 1.08995 * 109.47087 * 299.99901 * 18 17 16 40 40 H 1.09002 * 109.46903 * 59.99922 * 18 17 16 41 41 H 1.09005 * 109.46860 * 299.99699 * 19 18 17 42 42 H 1.09002 * 109.47639 * 60.00040 * 19 18 17 43 43 H 1.08000 * 126.34703 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.96559 * 179.70085 * 26 15 14 45 45 H 1.08000 * 120.03659 * 180.26635 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1268 2.8774 -1.6728 7 7 3.5550 3.6171 -0.6732 8 14 3.4387 3.4164 -3.4340 9 1 2.8605 2.4165 -4.3674 10 1 2.8016 4.7372 -3.6676 11 1 4.9012 3.5241 -3.6671 12 6 2.1634 -1.2096 -0.0005 13 6 1.4704 -2.4136 -0.0005 14 6 2.1642 -3.6078 -0.0016 15 6 3.5470 -3.6059 -0.0021 16 6 4.3005 -4.9110 -0.0027 17 7 4.5448 -5.3347 -1.3879 18 6 5.2796 -6.6062 -1.4277 19 6 5.5152 -7.0137 -2.8834 20 6 6.2684 -8.3183 -2.9243 21 7 7.4087 -8.5716 -2.3419 22 7 7.7597 -9.7843 -2.5866 23 6 6.8590 -10.3599 -3.3356 24 7 5.8846 -9.4474 -3.5674 25 1 5.0771 -9.5758 -4.0894 26 6 4.2399 -2.4092 0.0040 27 6 3.5525 -1.2114 -0.0006 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6084 2.0283 0.5138 32 1 3.1499 1.1384 0.5137 33 1 4.0318 4.4430 -0.8505 34 1 0.3905 -2.4157 0.0005 35 1 1.6259 -4.5441 -0.0012 36 1 5.2531 -4.7807 0.5108 37 1 3.7116 -5.6708 0.5111 38 1 3.6802 -5.4001 -1.9039 39 1 6.2389 -6.4872 -0.9243 40 1 4.6978 -7.3779 -0.9235 41 1 4.5559 -7.1325 -3.3873 42 1 6.0971 -6.2419 -3.3873 43 1 6.8843 -11.3760 -3.7006 44 1 5.3199 -2.4113 0.0085 45 1 4.0944 -0.2772 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119041509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:54 Heat of formation + Delta-G solvation = 86.093278 kcal Electronic energy + Delta-G solvation = -24465.582214 eV Core-core repulsion = 20904.292759 eV Total energy + Delta-G solvation = -3561.289455 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.05869 -40.43485 -38.09611 -36.77355 -34.88742 -34.68865 -33.59598 -31.85729 -31.29280 -29.66552 -29.21187 -27.03068 -25.66557 -24.06431 -23.73937 -23.30836 -22.97130 -21.92369 -20.98463 -19.19929 -18.62830 -18.11644 -17.29702 -16.89558 -16.59962 -16.26709 -16.00570 -15.99704 -15.68781 -15.32731 -15.12112 -14.65226 -14.44417 -14.26758 -14.05572 -13.94248 -13.54819 -13.17252 -13.13645 -13.01010 -12.68943 -12.62790 -12.58202 -12.53736 -12.26010 -12.18566 -11.86838 -11.78863 -11.69910 -11.38582 -11.33361 -10.63972 -10.40888 -10.22639 -9.63725 -9.29224 -8.35229 -7.78301 -6.36499 0.74401 0.83957 0.90782 1.36645 1.38627 1.50627 1.87999 1.92653 2.35202 2.65471 3.01961 3.07088 3.33400 3.65123 3.93774 4.08303 4.10852 4.16326 4.22161 4.27047 4.42810 4.46741 4.48731 4.51836 4.64458 4.68625 4.75077 4.78810 4.89694 4.92640 4.98892 5.04345 5.09487 5.15150 5.19346 5.22956 5.35882 5.61489 5.68531 5.72062 5.95443 6.08148 6.08933 6.25196 6.31448 6.51900 6.57452 6.84283 6.96349 7.35379 7.74778 8.84194 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.002205 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.261419 B =12697.477244 C =13748.835571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.632 5.632 3 C 0.265 3.735 4 C -0.538 4.538 5 H 0.050 0.950 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.962 3.038 9 H -0.269 1.269 10 H -0.274 1.274 11 H -0.278 1.278 12 C 0.212 3.788 13 C -0.216 4.216 14 C -0.058 4.058 15 C -0.159 4.159 16 C 0.122 3.878 17 N -0.692 5.692 18 C 0.076 3.924 19 C -0.025 4.025 20 C 0.186 3.814 21 N -0.341 5.341 22 N -0.357 5.357 23 C 0.170 3.830 24 N -0.567 5.567 25 H 0.449 0.551 26 C -0.057 4.057 27 C -0.218 4.218 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.009 0.991 32 H 0.010 0.990 33 H 0.267 0.733 34 H 0.134 0.866 35 H 0.146 0.854 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.349 0.651 39 H 0.064 0.936 40 H 0.036 0.964 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.266 0.734 44 H 0.118 0.882 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.470 -27.752 -5.490 28.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.340 5.340 3 C 0.143 3.857 4 C -0.577 4.577 5 H 0.068 0.932 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.200 1.200 11 H -0.204 1.204 12 C 0.107 3.893 13 C -0.239 4.239 14 C -0.077 4.077 15 C -0.161 4.161 16 C -0.006 4.006 17 N -0.324 5.324 18 C -0.054 4.054 19 C -0.065 4.065 20 C -0.086 4.086 21 N -0.182 5.182 22 N -0.195 5.195 23 C -0.120 4.120 24 N -0.182 5.182 25 H 0.293 0.707 26 C -0.076 4.076 27 C -0.241 4.241 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.152 0.848 35 H 0.164 0.836 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.168 0.832 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.132 0.868 42 H 0.116 0.884 43 H 0.282 0.718 44 H 0.136 0.864 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.540 -26.807 -4.597 27.242 hybrid contribution -1.586 0.265 -1.375 2.116 sum -3.126 -26.543 -5.972 27.385 Atomic orbital electron populations 1.21605 0.79364 1.02581 1.00937 1.46954 1.05630 1.03690 1.77685 1.18777 0.91071 0.80365 0.95459 1.21799 1.36202 1.06379 0.93318 0.93193 1.25807 0.95154 0.96420 1.01543 1.70049 1.39061 1.14841 1.32766 0.85437 0.77983 0.78184 0.79656 1.19344 1.19975 1.20418 1.18252 0.91564 0.86624 0.92872 1.20796 1.00067 0.90626 1.12407 1.20925 0.93193 0.97328 0.96287 1.19482 0.93609 0.94157 1.08884 1.20573 0.98666 0.92199 0.89186 1.60384 1.27492 1.30514 1.14010 1.21705 0.98809 0.89669 0.95261 1.19997 1.00041 0.88082 0.98419 1.25080 0.94936 0.92185 0.96394 1.74194 1.12018 1.09337 1.22652 1.74183 1.26273 1.01884 1.17203 1.27348 0.86011 0.99567 0.99076 1.44101 1.22489 1.10166 1.41458 0.70701 1.20793 0.99293 0.91320 0.96183 1.20776 0.93307 0.98476 1.11520 0.92988 0.92594 0.90151 0.97298 0.97216 0.92441 0.84800 0.83613 0.91188 0.93186 0.83195 0.91742 0.94597 0.86794 0.88369 0.71803 0.86413 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.35 10.19 127.77 1.30 4.65 16 2 N -0.63 -27.57 2.99 -726.55 -2.17 -29.74 16 3 C 0.27 14.04 4.91 85.64 0.42 14.46 16 4 C -0.54 -30.44 9.39 25.60 0.24 -30.20 16 5 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 6 C 0.01 0.55 5.46 84.65 0.46 1.02 16 7 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16 8 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 C 0.21 8.56 6.55 38.22 0.25 8.81 16 13 C -0.22 -6.79 9.21 22.40 0.21 -6.59 16 14 C -0.06 -1.51 9.69 22.25 0.22 -1.30 16 15 C -0.16 -4.37 5.39 -19.84 -0.11 -4.48 16 16 C 0.12 2.58 5.81 85.56 0.50 3.08 16 17 N -0.69 -13.01 6.49 -517.92 -3.36 -16.37 16 18 C 0.08 1.23 5.65 86.30 0.49 1.71 16 19 C -0.03 -0.32 6.10 29.85 0.18 -0.13 16 20 C 0.19 2.94 7.56 137.98 1.04 3.99 16 21 N -0.34 -8.46 12.19 -50.15 -0.61 -9.07 16 22 N -0.36 -8.08 12.21 -59.99 -0.73 -8.82 16 23 C 0.17 1.82 13.19 180.11 2.37 4.20 16 24 N -0.57 -4.50 6.20 -189.86 -1.18 -5.68 16 25 H 0.45 -0.43 8.96 -92.71 -0.83 -1.26 16 26 C -0.06 -1.95 9.69 22.25 0.22 -1.74 16 27 C -0.22 -9.21 9.21 22.40 0.21 -9.00 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 29 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 30 H 0.08 2.28 6.20 -2.38 -0.01 2.26 16 31 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16 32 H 0.01 0.57 6.20 -2.39 -0.01 0.55 16 33 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.13 3.58 6.14 -2.91 -0.02 3.56 16 35 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.07 1.58 8.08 -2.39 -0.02 1.56 16 37 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16 38 H 0.35 5.54 8.72 -89.69 -0.78 4.76 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.11 0.64 8.14 -2.38 -0.02 0.63 16 42 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.27 -0.10 8.06 -2.91 -0.02 -0.13 16 44 H 0.12 3.82 8.06 -2.91 -0.02 3.79 16 45 H 0.09 4.54 6.14 -2.91 -0.02 4.52 16 Total: -1.00 -77.99 377.91 1.66 -76.33 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -0.60 Total: 13.07 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 8.00 Total: -11.53 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -7.77 Total: -124.36 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -77.99 1.66 -76.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119041509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.424 kcal (2) G-P(sol) polarization free energy of solvation -77.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds