Wall clock time and date at job start Tue Mar 31 2020 12:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99708 * 2 1 4 4 H 1.48496 * 109.47081 * 270.00098 * 3 2 1 5 5 H 1.48497 * 109.46924 * 30.00361 * 3 2 1 6 6 H 1.48504 * 109.46734 * 150.00083 * 3 2 1 7 7 C 1.37876 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99959 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47143 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47240 * 304.99938 * 10 9 7 12 12 N 1.46496 * 109.47387 * 65.00086 * 10 9 7 13 13 C 1.34779 * 120.00054 * 204.99924 * 12 10 9 14 14 O 1.21273 * 120.00093 * 0.02562 * 13 12 10 15 15 C 1.50706 * 119.99767 * 179.97438 * 13 12 10 16 16 C 1.53000 * 109.46735 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 15 13 18 18 C 1.54267 * 110.03373 * 292.91297 * 17 16 15 19 19 C 1.54968 * 104.16137 * 217.13581 * 18 17 16 20 20 C 1.54884 * 102.77441 * 37.88396 * 19 18 17 21 21 C 1.53874 * 110.03593 * 175.69217 * 17 16 15 22 22 C 1.50700 * 109.47082 * 184.99842 * 10 9 7 23 23 C 1.38229 * 120.00293 * 279.72490 * 22 10 9 24 24 C 1.38239 * 120.00348 * 179.80974 * 23 22 10 25 25 C 1.38240 * 119.99404 * 0.39786 * 24 23 22 26 26 C 1.38230 * 120.00412 * 359.85706 * 25 24 23 27 27 C 1.38233 * 120.00004 * 359.95522 * 26 25 24 28 28 H 0.96996 * 120.00342 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47053 * 60.00025 * 9 7 2 30 30 H 1.09004 * 109.47062 * 300.00335 * 9 7 2 31 31 H 0.97005 * 120.00266 * 24.99746 * 12 10 9 32 32 H 1.09001 * 109.46797 * 60.00350 * 15 13 12 33 33 H 1.08992 * 109.47518 * 300.00347 * 15 13 12 34 34 H 1.09002 * 109.47398 * 300.00410 * 16 15 13 35 35 H 1.09001 * 109.47194 * 60.00591 * 16 15 13 36 36 H 1.09004 * 110.01939 * 54.29686 * 17 16 15 37 37 H 1.09001 * 110.48609 * 335.77840 * 18 17 16 38 38 H 1.08999 * 110.49311 * 98.42344 * 18 17 16 39 39 H 1.08997 * 110.72048 * 279.57487 * 19 18 17 40 40 H 1.08993 * 110.92252 * 156.29196 * 19 18 17 41 41 H 1.09009 * 110.48779 * 203.40596 * 20 19 18 42 42 H 1.09001 * 110.59973 * 80.82109 * 20 19 18 43 43 H 1.09003 * 110.03243 * 238.56963 * 21 17 16 44 44 H 1.08996 * 110.02723 * 359.95243 * 21 17 16 45 45 H 1.07999 * 120.00267 * 0.02562 * 23 22 10 46 46 H 1.08002 * 120.00503 * 180.23414 * 24 23 22 47 47 H 1.08001 * 119.99592 * 179.83302 * 25 24 23 48 48 H 1.08000 * 120.00369 * 179.97438 * 26 25 24 49 49 H 1.07997 * 120.00357 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 1 2.9295 -3.5551 -0.8423 12 7 3.0064 -3.6538 1.2512 13 6 4.2311 -4.2144 1.2990 14 8 4.7034 -4.7252 0.3056 15 6 5.0142 -4.2055 2.5866 16 6 6.3603 -4.8997 2.3696 17 6 7.1551 -4.8913 3.6769 18 6 7.5545 -3.4470 4.0432 19 6 8.9731 -3.5884 4.6508 20 6 9.6155 -4.6875 3.7685 21 6 8.4648 -5.6800 3.5027 22 6 1.4961 -4.9636 -0.1243 23 6 0.8993 -5.5261 0.9884 24 6 0.2086 -6.7181 0.8741 25 6 0.1217 -7.3517 -0.3515 26 6 0.7229 -6.7918 -1.4632 27 6 1.4103 -5.5979 -1.3496 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5570 0.8897 31 1 2.6289 -3.2449 2.0458 32 1 4.4525 -4.7339 3.3570 33 1 5.1834 -3.1760 2.9019 34 1 6.1915 -5.9293 2.0540 35 1 6.9218 -4.3710 1.5993 36 1 6.5596 -5.3286 4.4784 37 1 7.5825 -2.8210 3.1513 38 1 6.8633 -3.0346 4.7782 39 1 8.9169 -3.9114 5.6903 40 1 9.5271 -2.6535 4.5677 41 1 10.4278 -5.1797 4.3034 42 1 9.9781 -4.2641 2.8319 43 1 8.5053 -6.4996 4.2202 44 1 8.5337 -6.0694 2.4871 45 1 0.9697 -5.0327 1.9465 46 1 -0.2609 -7.1557 1.7427 47 1 -0.4157 -8.2843 -0.4403 48 1 0.6554 -7.2870 -2.4206 49 1 1.8797 -5.1603 -2.2182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153500851.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:28 Heat of formation + Delta-G solvation = -55.231319 kcal Electronic energy + Delta-G solvation = -26069.763837 eV Core-core repulsion = 22573.593680 eV Total energy + Delta-G solvation = -3496.170157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.69156 -38.75642 -38.06670 -35.19713 -33.04063 -32.71010 -31.07402 -30.44462 -28.97247 -28.78970 -27.85270 -24.97937 -23.23057 -22.27301 -21.93101 -20.86766 -20.07593 -19.59780 -19.58245 -16.96477 -16.41960 -16.16279 -16.00109 -15.35161 -15.27000 -14.93907 -14.70758 -14.51467 -14.00451 -13.65061 -13.44982 -13.09902 -13.00998 -12.90159 -12.56956 -12.42195 -12.10698 -12.02303 -11.56369 -11.31852 -11.23730 -11.12601 -11.11631 -10.95890 -10.80996 -10.73045 -10.71106 -10.60107 -10.55842 -10.44742 -10.35932 -9.77259 -9.34768 -9.21986 -8.53492 -8.45801 -8.36862 -8.16504 -6.09468 -4.12919 1.79512 1.81408 3.20501 3.26952 3.33949 3.36728 3.79973 4.25442 4.39399 4.47850 4.52606 4.64597 5.10537 5.12940 5.20815 5.27180 5.28219 5.28547 5.33294 5.39000 5.47747 5.50515 5.54409 5.55285 5.64042 5.65271 5.77268 5.80018 5.87784 5.92198 5.95450 5.98389 6.08219 6.16592 6.20585 6.23228 6.32515 6.37616 6.45690 6.46534 6.60169 6.85761 6.86538 6.96703 7.13494 7.41841 7.49760 7.63995 7.87338 8.19105 8.26698 8.84547 8.93056 9.52141 11.01109 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.007986 B = 0.004220 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3505.409705 B = 6633.649544 C = 9568.065362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.183 3.817 11 H 0.085 0.915 12 N -0.702 5.702 13 C 0.508 3.492 14 O -0.553 6.553 15 C -0.142 4.142 16 C -0.093 4.093 17 C -0.093 4.093 18 C -0.123 4.123 19 C -0.126 4.126 20 C -0.125 4.125 21 C -0.121 4.121 22 C -0.069 4.069 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.109 4.109 28 H 0.262 0.738 29 H 0.033 0.967 30 H 0.024 0.976 31 H 0.400 0.600 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.116 0.884 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.972 -11.673 8.335 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.079 3.921 11 H 0.103 0.897 12 N -0.351 5.351 13 C 0.295 3.705 14 O -0.432 6.432 15 C -0.182 4.182 16 C -0.131 4.131 17 C -0.111 4.111 18 C -0.161 4.161 19 C -0.163 4.163 20 C -0.163 4.163 21 C -0.159 4.159 22 C -0.071 4.071 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.235 0.765 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.134 0.866 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.144 -11.904 7.619 17.397 hybrid contribution 0.052 1.205 0.366 1.260 sum 10.196 -10.699 7.985 16.798 Atomic orbital electron populations 1.69955 1.06024 1.26798 1.50323 1.24986 0.94787 0.99208 0.95137 0.86601 0.79802 0.83421 0.78237 1.20622 1.21245 1.19882 1.21136 0.93076 0.90397 1.51195 0.92406 1.19381 0.93233 0.90191 0.98514 1.20218 0.93383 0.91818 0.86694 0.89661 1.46012 1.17084 1.57907 1.14132 1.20623 0.81727 0.77875 0.90317 1.90644 1.69562 1.45949 1.37018 1.21701 0.96959 1.03267 0.96248 1.21433 0.93937 1.01257 0.96514 1.21822 0.96061 0.95614 0.97639 1.22516 0.96203 0.96581 1.00773 1.22503 0.96260 0.98582 0.98987 1.22355 0.97517 0.96651 0.99756 1.22207 0.94100 0.97838 1.01751 1.20567 0.96699 0.96514 0.93287 1.20904 0.97671 0.95597 0.98488 1.21043 0.99897 0.96056 0.97346 1.20990 1.01125 1.00038 0.93240 1.21040 0.98568 0.96207 0.98280 1.21026 0.99146 0.95098 0.97475 0.92869 0.94868 0.95782 0.76544 0.89514 0.89026 0.91467 0.91190 0.91174 0.91214 0.91659 0.91794 0.91836 0.92114 0.91702 0.92124 0.91547 0.86587 0.86759 0.86862 0.86629 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.76 8.84 -34.44 -0.30 -14.06 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.58 4.50 -27.89 -0.13 0.45 16 10 C 0.18 3.76 2.12 -69.09 -0.15 3.61 16 11 H 0.09 1.93 7.44 -51.93 -0.39 1.54 16 12 N -0.70 -12.61 4.02 -54.94 -0.22 -12.83 16 13 C 0.51 8.87 7.79 -10.98 -0.09 8.78 16 14 O -0.55 -11.60 15.64 5.56 0.09 -11.51 16 15 C -0.14 -1.82 5.55 -27.88 -0.15 -1.97 16 16 C -0.09 -1.15 3.63 -26.73 -0.10 -1.25 16 17 C -0.09 -0.92 2.93 -89.50 -0.26 -1.18 16 18 C -0.12 -1.19 5.50 -25.03 -0.14 -1.32 16 19 C -0.13 -1.08 6.91 -24.70 -0.17 -1.25 16 20 C -0.13 -1.08 6.83 -25.08 -0.17 -1.25 16 21 C -0.12 -1.12 6.46 -25.61 -0.17 -1.29 16 22 C -0.07 -1.31 4.91 -104.62 -0.51 -1.82 16 23 C -0.11 -1.84 9.32 -39.58 -0.37 -2.20 16 24 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 25 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 26 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 27 C -0.11 -1.93 9.67 -39.58 -0.38 -2.31 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.40 6.55 8.60 -40.82 -0.35 6.20 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.09 7.48 -51.93 -0.39 0.71 16 34 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 35 H 0.07 0.97 7.98 -51.93 -0.41 0.55 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.74 7.77 -51.93 -0.40 0.34 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 45 H 0.12 1.83 7.71 -52.49 -0.40 1.42 16 46 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 47 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 48 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 49 H 0.12 2.04 8.04 -52.49 -0.42 1.62 16 LS Contribution 396.80 15.07 5.98 5.98 Total: -1.00 -30.71 396.80 -11.44 -42.16 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -8.63 Total: 7.51 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -4.38 Total: -22.42 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.52 Total: -37.68 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.71 -11.44 -42.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153500851.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.075 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds