Wall clock time and date at job start Tue Mar 31 2020 12:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99708 * 2 1 4 4 H 1.48496 * 109.47081 * 270.00098 * 3 2 1 5 5 H 1.48497 * 109.46924 * 30.00361 * 3 2 1 6 6 H 1.48504 * 109.46734 * 150.00083 * 3 2 1 7 7 C 1.37876 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99959 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47143 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47240 * 304.99938 * 10 9 7 12 12 N 1.46496 * 109.47387 * 65.00086 * 10 9 7 13 13 C 1.34779 * 120.00054 * 204.99924 * 12 10 9 14 14 O 1.21273 * 120.00093 * 0.02562 * 13 12 10 15 15 C 1.50706 * 119.99767 * 179.97438 * 13 12 10 16 16 C 1.53000 * 109.46735 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 15 13 18 18 C 1.54267 * 110.03373 * 292.91297 * 17 16 15 19 19 C 1.54968 * 104.16137 * 217.13581 * 18 17 16 20 20 C 1.54884 * 102.77441 * 37.88396 * 19 18 17 21 21 C 1.53874 * 110.03593 * 175.69217 * 17 16 15 22 22 C 1.50700 * 109.47082 * 184.99842 * 10 9 7 23 23 C 1.38229 * 120.00293 * 279.72490 * 22 10 9 24 24 C 1.38239 * 120.00348 * 179.80974 * 23 22 10 25 25 C 1.38240 * 119.99404 * 0.39786 * 24 23 22 26 26 C 1.38230 * 120.00412 * 359.85706 * 25 24 23 27 27 C 1.38233 * 120.00004 * 359.95522 * 26 25 24 28 28 H 0.96996 * 120.00342 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47053 * 60.00025 * 9 7 2 30 30 H 1.09004 * 109.47062 * 300.00335 * 9 7 2 31 31 H 0.97005 * 120.00266 * 24.99746 * 12 10 9 32 32 H 1.09001 * 109.46797 * 60.00350 * 15 13 12 33 33 H 1.08992 * 109.47518 * 300.00347 * 15 13 12 34 34 H 1.09002 * 109.47398 * 300.00410 * 16 15 13 35 35 H 1.09001 * 109.47194 * 60.00591 * 16 15 13 36 36 H 1.09004 * 110.01939 * 54.29686 * 17 16 15 37 37 H 1.09001 * 110.48609 * 335.77840 * 18 17 16 38 38 H 1.08999 * 110.49311 * 98.42344 * 18 17 16 39 39 H 1.08997 * 110.72048 * 279.57487 * 19 18 17 40 40 H 1.08993 * 110.92252 * 156.29196 * 19 18 17 41 41 H 1.09009 * 110.48779 * 203.40596 * 20 19 18 42 42 H 1.09001 * 110.59973 * 80.82109 * 20 19 18 43 43 H 1.09003 * 110.03243 * 238.56963 * 21 17 16 44 44 H 1.08996 * 110.02723 * 359.95243 * 21 17 16 45 45 H 1.07999 * 120.00267 * 0.02562 * 23 22 10 46 46 H 1.08002 * 120.00503 * 180.23414 * 24 23 22 47 47 H 1.08001 * 119.99592 * 179.83302 * 25 24 23 48 48 H 1.08000 * 120.00369 * 179.97438 * 26 25 24 49 49 H 1.07997 * 120.00357 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 1 2.9295 -3.5551 -0.8423 12 7 3.0064 -3.6538 1.2512 13 6 4.2311 -4.2144 1.2990 14 8 4.7034 -4.7252 0.3056 15 6 5.0142 -4.2055 2.5866 16 6 6.3603 -4.8997 2.3696 17 6 7.1551 -4.8913 3.6769 18 6 7.5545 -3.4470 4.0432 19 6 8.9731 -3.5884 4.6508 20 6 9.6155 -4.6875 3.7685 21 6 8.4648 -5.6800 3.5027 22 6 1.4961 -4.9636 -0.1243 23 6 0.8993 -5.5261 0.9884 24 6 0.2086 -6.7181 0.8741 25 6 0.1217 -7.3517 -0.3515 26 6 0.7229 -6.7918 -1.4632 27 6 1.4103 -5.5979 -1.3496 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5570 0.8897 31 1 2.6289 -3.2449 2.0458 32 1 4.4525 -4.7339 3.3570 33 1 5.1834 -3.1760 2.9019 34 1 6.1915 -5.9293 2.0540 35 1 6.9218 -4.3710 1.5993 36 1 6.5596 -5.3286 4.4784 37 1 7.5825 -2.8210 3.1513 38 1 6.8633 -3.0346 4.7782 39 1 8.9169 -3.9114 5.6903 40 1 9.5271 -2.6535 4.5677 41 1 10.4278 -5.1797 4.3034 42 1 9.9781 -4.2641 2.8319 43 1 8.5053 -6.4996 4.2202 44 1 8.5337 -6.0694 2.4871 45 1 0.9697 -5.0327 1.9465 46 1 -0.2609 -7.1557 1.7427 47 1 -0.4157 -8.2843 -0.4403 48 1 0.6554 -7.2870 -2.4206 49 1 1.8797 -5.1603 -2.2182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153500851.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:27 Heat of formation + Delta-G solvation = -69.790539 kcal Electronic energy + Delta-G solvation = -26070.395172 eV Core-core repulsion = 22573.593680 eV Total energy + Delta-G solvation = -3496.801492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.09656 -39.88397 -39.08172 -36.80282 -34.71940 -34.08040 -32.46525 -31.69829 -30.57609 -29.60417 -28.88634 -26.69799 -24.38193 -23.78001 -23.32228 -21.75064 -21.35923 -20.99816 -20.41384 -18.70388 -17.88826 -17.67061 -17.09823 -16.62153 -16.44254 -16.38631 -15.97132 -15.75326 -15.33668 -14.83822 -14.53685 -14.40755 -14.20352 -14.16219 -14.05597 -13.72653 -13.57470 -13.37996 -13.07592 -12.90828 -12.65754 -12.46772 -12.25694 -12.13702 -11.93674 -11.88208 -11.82810 -11.67333 -11.58634 -11.46275 -11.41444 -11.32957 -11.18088 -10.77470 -10.56102 -9.94136 -9.76025 -9.52044 -8.21147 -6.31621 0.50913 0.55239 1.38868 1.40543 1.50586 1.80128 2.39188 2.41669 2.97509 3.13162 3.71058 3.75113 3.82356 3.96068 4.02667 4.05273 4.20367 4.22154 4.27197 4.31918 4.44755 4.61243 4.63600 4.65386 4.70642 4.74728 4.75881 4.78698 4.81564 4.84388 4.95040 5.02955 5.12286 5.12501 5.19596 5.23510 5.25572 5.30061 5.33138 5.42359 5.44685 5.52038 5.60576 5.60918 5.62883 5.64033 5.77109 5.92136 6.15437 6.19985 6.76345 6.81044 7.37239 7.43037 8.89659 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.007986 B = 0.004220 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3505.409705 B = 6633.649544 C = 9568.065362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.039 3.961 10 C 0.199 3.801 11 H 0.053 0.947 12 N -0.699 5.699 13 C 0.504 3.496 14 O -0.593 6.593 15 C -0.131 4.131 16 C -0.087 4.087 17 C -0.087 4.087 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.097 4.097 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.136 4.136 28 H 0.264 0.736 29 H 0.000 1.000 30 H 0.013 0.987 31 H 0.409 0.591 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.123 0.877 46 H 0.148 0.852 47 H 0.152 0.848 48 H 0.143 0.857 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.289 -12.784 10.443 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.002 3.998 10 C 0.093 3.907 11 H 0.071 0.929 12 N -0.348 5.348 13 C 0.292 3.708 14 O -0.475 6.475 15 C -0.170 4.170 16 C -0.125 4.125 17 C -0.105 4.105 18 C -0.164 4.164 19 C -0.161 4.161 20 C -0.164 4.164 21 C -0.161 4.161 22 C -0.098 4.098 23 C -0.139 4.139 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.142 4.142 27 C -0.155 4.155 28 H 0.073 0.927 29 H 0.019 0.981 30 H 0.031 0.969 31 H 0.244 0.756 32 H 0.135 0.865 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.141 0.859 46 H 0.166 0.834 47 H 0.169 0.831 48 H 0.161 0.839 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.467 -13.014 9.747 19.337 hybrid contribution -0.087 1.476 -0.348 1.519 sum 10.381 -11.537 9.400 18.144 Atomic orbital electron populations 1.70066 1.07497 1.27769 1.51271 1.25779 0.95564 1.02662 0.94711 0.85581 0.78835 0.79219 0.78214 1.20546 1.20491 1.18926 1.21393 0.92966 0.91609 1.50827 0.92893 1.19116 0.93266 0.91199 0.96268 1.19683 0.92148 0.91935 0.86905 0.92881 1.45941 1.17388 1.58111 1.13405 1.21469 0.81245 0.76592 0.91494 1.90623 1.70264 1.47621 1.38955 1.21734 0.96619 1.04630 0.94051 1.21365 0.93753 0.99986 0.97426 1.21788 0.96162 0.96192 0.96362 1.22531 0.97310 0.96029 1.00483 1.22505 0.95410 0.98708 0.99439 1.22370 0.97696 0.96642 0.99651 1.22225 0.94024 0.98311 1.01504 1.20460 0.98349 0.96264 0.94738 1.21079 0.98099 0.96697 0.98055 1.21458 0.98774 0.94983 0.98949 1.21474 0.99946 1.00950 0.92397 1.21382 0.97538 0.95110 1.00180 1.21178 1.00587 0.96711 0.96990 0.92690 0.98131 0.96912 0.75576 0.86540 0.87663 0.92703 0.93452 0.89687 0.92732 0.90703 0.90622 0.91546 0.90813 0.92544 0.90833 0.92691 0.85939 0.83431 0.83058 0.83930 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.21 13.29 21.45 0.28 -53.92 16 2 C 0.01 0.64 5.46 84.66 0.46 1.10 16 3 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.53 -28.96 8.84 25.60 0.23 -28.73 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 9 C 0.04 1.98 4.50 29.85 0.13 2.11 16 10 C 0.20 8.62 2.12 44.25 0.09 8.72 16 11 H 0.05 2.61 7.44 -2.39 -0.02 2.59 16 12 N -0.70 -25.80 4.02 -446.11 -1.79 -27.59 16 13 C 0.50 17.92 7.79 87.66 0.68 18.60 16 14 O -0.59 -25.99 15.64 -3.01 -0.05 -26.03 16 15 C -0.13 -3.22 5.55 29.85 0.17 -3.06 16 16 C -0.09 -2.12 3.63 30.59 0.11 -2.01 16 17 C -0.09 -1.57 2.93 -10.07 -0.03 -1.60 16 18 C -0.13 -2.22 5.50 31.70 0.17 -2.04 16 19 C -0.12 -1.87 6.91 31.91 0.22 -1.64 16 20 C -0.13 -1.99 6.83 31.67 0.22 -1.77 16 21 C -0.12 -2.11 6.46 31.32 0.20 -1.91 16 22 C -0.10 -3.77 4.91 -19.86 -0.10 -3.87 16 23 C -0.12 -4.05 9.32 22.27 0.21 -3.85 16 24 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 25 C -0.13 -3.37 10.05 22.27 0.22 -3.14 16 26 C -0.12 -3.66 10.05 22.27 0.22 -3.43 16 27 C -0.14 -5.00 9.67 22.27 0.22 -4.78 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.41 13.51 8.60 -92.70 -0.80 12.71 16 32 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.11 2.36 7.48 -2.39 -0.02 2.34 16 34 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 35 H 0.05 1.35 7.98 -2.39 -0.02 1.33 16 36 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.05 1.12 7.77 -2.39 -0.02 1.10 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.05 1.06 7.67 -2.39 -0.02 1.04 16 45 H 0.12 3.80 7.71 -2.91 -0.02 3.78 16 46 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 47 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 48 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 49 H 0.11 4.06 8.04 -2.91 -0.02 4.04 16 Total: -1.00 -68.87 396.80 4.24 -64.64 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.11 Total: 31.98 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 3.66 Total: -34.49 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -1.51 Total: -81.51 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.05 Total: -26.03 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -68.87 4.24 -64.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153500851.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.153 kcal (2) G-P(sol) polarization free energy of solvation -68.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds