Wall clock time and date at job start Tue Mar 31 2020 12:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00257 * 2 1 4 4 H 1.48493 * 109.47206 * 269.99574 * 3 2 1 5 5 H 1.48503 * 109.47464 * 29.99706 * 3 2 1 6 6 H 1.48507 * 109.47274 * 149.99356 * 3 2 1 7 7 C 1.37881 * 119.99597 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99650 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00042 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46638 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47009 * 304.99014 * 10 9 7 12 12 N 1.46497 * 109.47201 * 64.99927 * 10 9 7 13 13 C 1.34777 * 119.99525 * 204.99403 * 12 10 9 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 10 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 10 16 16 C 1.54242 * 108.89772 * 303.16043 * 15 13 12 17 17 C 1.50470 * 108.52596 * 159.26646 * 16 15 13 18 18 C 1.54061 * 112.50202 * 94.15584 * 17 16 15 19 19 C 1.54075 * 112.81344 * 318.28115 * 18 17 16 20 20 C 1.50476 * 112.49228 * 318.28552 * 19 18 17 21 21 C 1.45541 * 108.89530 * 180.27986 * 15 13 12 22 22 C 1.50707 * 109.46378 * 184.99777 * 10 9 7 23 23 C 1.38229 * 119.99911 * 279.72032 * 22 10 9 24 24 C 1.38238 * 119.99869 * 179.79104 * 23 22 10 25 25 C 1.38232 * 119.99878 * 0.44627 * 24 23 22 26 26 C 1.38236 * 120.00189 * 359.80920 * 25 24 23 27 27 C 1.38236 * 119.99750 * 100.00494 * 22 10 9 28 28 H 0.97004 * 119.99455 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47319 * 59.99552 * 9 7 2 30 30 H 1.09001 * 109.46713 * 299.99596 * 9 7 2 31 31 H 0.97000 * 120.00580 * 25.00149 * 12 10 9 32 32 H 1.08998 * 108.87448 * 61.67243 * 15 13 12 33 33 H 1.09004 * 109.62849 * 278.97974 * 16 15 13 34 34 H 1.09004 * 109.62776 * 39.55325 * 16 15 13 35 35 H 1.09001 * 108.87935 * 333.36746 * 17 16 15 36 36 H 1.09007 * 108.79206 * 214.87590 * 17 16 15 37 37 H 1.09001 * 108.81447 * 197.42555 * 18 17 16 38 38 H 1.08998 * 108.73329 * 79.07680 * 18 17 16 39 39 H 1.08997 * 108.87737 * 197.51137 * 19 18 17 40 40 H 1.08994 * 108.87483 * 79.06334 * 19 18 17 41 41 H 1.08995 * 109.63026 * 334.44315 * 20 19 18 42 42 H 1.09006 * 109.62490 * 213.86402 * 20 19 18 43 43 H 1.09001 * 108.89568 * 303.43656 * 21 15 13 44 44 H 1.08998 * 108.89828 * 62.02612 * 21 15 13 45 45 H 1.07999 * 120.00241 * 0.02562 * 23 22 10 46 46 H 1.08000 * 119.99930 * 180.27688 * 24 23 22 47 47 H 1.08004 * 120.00001 * 179.83467 * 25 24 23 48 48 H 1.07999 * 120.00458 * 179.97438 * 26 25 24 49 49 H 1.08005 * 120.00239 * 359.97225 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9292 -3.5553 -0.8414 12 7 3.0062 -3.6540 1.2523 13 6 4.2308 -4.2147 1.3000 14 8 4.7030 -4.7256 0.3065 15 6 5.0163 -4.2009 2.5860 16 6 5.1806 -2.7408 3.0553 17 6 5.4882 -2.7438 4.5282 18 6 7.0014 -2.7050 4.8147 19 6 7.8106 -3.6213 3.8769 20 6 7.1408 -4.9497 3.6511 21 6 6.2951 -4.8595 2.3644 22 6 1.4956 -4.9637 -0.1233 23 6 0.8989 -5.5261 0.9895 24 6 0.2076 -6.7178 0.8751 25 6 0.1210 -7.3517 -0.3502 26 6 0.7222 -6.7919 -1.4620 27 6 1.4098 -5.5980 -1.3485 28 1 -0.4849 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8904 31 1 2.6287 -3.2451 2.0468 32 1 4.4613 -4.7535 3.3441 33 1 6.0001 -2.2713 2.5111 34 1 4.2561 -2.1921 2.8754 35 1 5.0677 -3.6450 4.9745 36 1 5.0201 -1.8725 4.9865 37 1 7.1723 -3.0174 5.8449 38 1 7.3541 -1.6805 4.6954 39 1 8.7946 -3.7922 4.3136 40 1 7.9352 -3.1213 2.9165 41 1 6.4953 -5.1829 4.4979 42 1 7.8970 -5.7266 3.5386 43 1 6.1131 -5.8670 1.9903 44 1 6.8547 -4.3006 1.6143 45 1 0.9694 -5.0327 1.9476 46 1 -0.2624 -7.1550 1.7437 47 1 -0.4168 -8.2841 -0.4391 48 1 0.6549 -7.2873 -2.4194 49 1 1.8796 -5.1606 -2.2171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153689371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:11 Heat of formation + Delta-G solvation = -47.530500 kcal Electronic energy + Delta-G solvation = -27054.866764 eV Core-core repulsion = 23559.030540 eV Total energy + Delta-G solvation = -3495.836224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.20025 -38.91256 -37.57695 -35.18182 -32.85530 -32.48900 -32.11759 -30.79573 -30.40348 -28.76440 -25.58629 -24.87297 -24.33902 -22.29126 -21.96412 -21.46494 -19.89095 -19.49750 -19.25917 -17.12651 -16.60246 -16.16531 -15.75585 -15.43015 -14.92552 -14.71375 -14.55012 -14.47027 -13.89037 -13.59749 -13.54779 -13.11235 -12.99580 -12.93562 -12.65130 -12.51173 -12.13773 -12.10589 -12.05013 -11.55046 -11.12955 -11.10894 -10.94540 -10.73485 -10.72755 -10.62263 -10.59698 -10.56690 -10.43940 -10.34798 -10.15588 -9.77059 -9.31872 -9.12702 -8.53347 -8.45586 -8.35773 -8.16411 -6.09378 -4.12600 1.79560 1.81462 3.17353 3.26729 3.33902 3.36563 3.77697 4.25231 4.39406 4.63626 4.75047 4.82351 5.11396 5.15308 5.20160 5.26374 5.27468 5.27899 5.28526 5.34790 5.39999 5.42419 5.55746 5.70189 5.74361 5.87893 5.92214 5.95482 5.97652 6.07255 6.13955 6.16715 6.17360 6.22408 6.28839 6.35082 6.37893 6.45909 6.47810 6.51548 6.60168 6.85835 6.86583 6.96838 7.13582 7.41877 7.49992 7.64108 7.87521 8.19050 8.26796 8.84182 8.93360 9.52339 11.01190 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.007644 B = 0.005785 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3662.075044 B = 4838.941799 C = 7769.847649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.183 3.817 11 H 0.085 0.915 12 N -0.700 5.700 13 C 0.511 3.489 14 O -0.552 6.552 15 C -0.098 4.098 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.114 4.114 21 C -0.103 4.103 22 C -0.070 4.070 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.109 4.109 28 H 0.261 0.739 29 H 0.033 0.967 30 H 0.024 0.976 31 H 0.400 0.600 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.116 0.884 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.942 -10.404 8.471 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.079 3.921 11 H 0.103 0.897 12 N -0.348 5.348 13 C 0.297 3.703 14 O -0.431 6.431 15 C -0.120 4.120 16 C -0.151 4.151 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.071 4.071 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.235 0.765 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.134 0.866 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.114 -10.626 7.756 15.457 hybrid contribution 0.092 1.194 0.325 1.241 sum 8.206 -9.432 8.082 14.887 Atomic orbital electron populations 1.69961 1.06013 1.26762 1.50332 1.24981 0.94777 0.99174 0.95171 0.86618 0.79843 0.83481 0.78234 1.20661 1.21269 1.19826 1.21128 0.93067 0.90340 1.51145 0.92378 1.19385 0.93229 0.90199 0.98511 1.20230 0.93381 0.91824 0.86684 0.89655 1.45992 1.17011 1.57774 1.14064 1.20663 0.81752 0.77781 0.90155 1.90644 1.69651 1.45964 1.36822 1.20261 0.97359 0.98321 0.96039 1.21418 1.03280 0.94300 0.96075 1.21334 0.95803 1.02061 0.96275 1.21915 0.95065 0.99483 0.98928 1.21368 0.98346 0.95927 1.00166 1.21312 0.98976 0.97041 0.97835 1.20294 0.95049 1.01390 0.97388 1.20568 0.96706 0.96525 0.93283 1.20903 0.97676 0.95605 0.98482 1.21038 0.99888 0.96053 0.97345 1.20989 1.01125 1.00033 0.93239 1.21041 0.98569 0.96204 0.98271 1.21023 0.99138 0.95095 0.97469 0.92892 0.94883 0.95779 0.76515 0.89345 0.91026 0.90342 0.92027 0.91914 0.92564 0.92409 0.92699 0.91914 0.91736 0.92013 0.91612 0.91406 0.86600 0.86767 0.86869 0.86640 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -13.60 8.84 -34.44 -0.30 -13.90 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.58 4.50 -27.88 -0.13 0.45 16 10 C 0.18 3.74 2.12 -69.08 -0.15 3.59 16 11 H 0.09 1.92 7.44 -51.93 -0.39 1.54 16 12 N -0.70 -12.51 3.72 -54.93 -0.20 -12.71 16 13 C 0.51 8.96 7.09 -10.98 -0.08 8.88 16 14 O -0.55 -11.64 15.44 5.55 0.09 -11.55 16 15 C -0.10 -1.31 2.04 -94.64 -0.19 -1.51 16 16 C -0.11 -1.43 4.94 -27.34 -0.14 -1.57 16 17 C -0.12 -1.21 5.31 -27.44 -0.15 -1.36 16 18 C -0.12 -1.10 5.85 -25.62 -0.15 -1.25 16 19 C -0.12 -1.17 5.31 -27.43 -0.15 -1.32 16 20 C -0.11 -1.14 5.61 -27.34 -0.15 -1.30 16 21 C -0.10 -1.32 3.84 -29.60 -0.11 -1.44 16 22 C -0.07 -1.30 4.91 -104.62 -0.51 -1.82 16 23 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 24 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 25 C -0.14 -1.96 10.05 -39.58 -0.40 -2.35 16 26 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 27 C -0.11 -1.92 9.67 -39.58 -0.38 -2.31 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.40 6.59 7.76 -40.82 -0.32 6.27 16 32 H 0.09 1.04 7.46 -51.93 -0.39 0.65 16 33 H 0.07 0.96 6.98 -51.93 -0.36 0.60 16 34 H 0.08 1.10 6.92 -51.93 -0.36 0.74 16 35 H 0.06 0.59 6.63 -51.93 -0.34 0.24 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.67 6.63 -51.93 -0.34 0.33 16 41 H 0.06 0.61 6.98 -51.93 -0.36 0.25 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 44 H 0.07 0.97 7.39 -51.93 -0.38 0.58 16 45 H 0.12 1.83 7.71 -52.49 -0.40 1.42 16 46 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 47 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 48 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 49 H 0.12 2.04 8.04 -52.48 -0.42 1.62 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -30.24 383.28 -11.12 -41.36 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.25 Total: 8.35 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -4.25 Total: -22.39 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.53 Total: -37.43 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.24 -11.12 -41.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153689371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.170 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds