Wall clock time and date at job start Tue Mar 31 2020 12:00:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86793 * 120.00257 * 2 1
4 4 H 1.48493 * 109.47206 * 269.99574 * 3 2 1
5 5 H 1.48503 * 109.47464 * 29.99706 * 3 2 1
6 6 H 1.48507 * 109.47274 * 149.99356 * 3 2 1
7 7 C 1.37881 * 119.99597 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99650 * 180.02562 * 7 2 1
9 9 C 1.50702 * 120.00042 * 0.02562 * 7 2 1
10 10 C 1.53001 * 109.46638 * 179.97438 * 9 7 2
11 11 H 1.09001 * 109.47009 * 304.99014 * 10 9 7
12 12 N 1.46497 * 109.47201 * 64.99927 * 10 9 7
13 13 C 1.34777 * 119.99525 * 204.99403 * 12 10 9
14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 10
15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 10
16 16 C 1.54242 * 108.89772 * 303.16043 * 15 13 12
17 17 C 1.50470 * 108.52596 * 159.26646 * 16 15 13
18 18 C 1.54061 * 112.50202 * 94.15584 * 17 16 15
19 19 C 1.54075 * 112.81344 * 318.28115 * 18 17 16
20 20 C 1.50476 * 112.49228 * 318.28552 * 19 18 17
21 21 C 1.45541 * 108.89530 * 180.27986 * 15 13 12
22 22 C 1.50707 * 109.46378 * 184.99777 * 10 9 7
23 23 C 1.38229 * 119.99911 * 279.72032 * 22 10 9
24 24 C 1.38238 * 119.99869 * 179.79104 * 23 22 10
25 25 C 1.38232 * 119.99878 * 0.44627 * 24 23 22
26 26 C 1.38236 * 120.00189 * 359.80920 * 25 24 23
27 27 C 1.38236 * 119.99750 * 100.00494 * 22 10 9
28 28 H 0.97004 * 119.99455 * 0.02562 * 1 2 3
29 29 H 1.09000 * 109.47319 * 59.99552 * 9 7 2
30 30 H 1.09001 * 109.46713 * 299.99596 * 9 7 2
31 31 H 0.97000 * 120.00580 * 25.00149 * 12 10 9
32 32 H 1.08998 * 108.87448 * 61.67243 * 15 13 12
33 33 H 1.09004 * 109.62849 * 278.97974 * 16 15 13
34 34 H 1.09004 * 109.62776 * 39.55325 * 16 15 13
35 35 H 1.09001 * 108.87935 * 333.36746 * 17 16 15
36 36 H 1.09007 * 108.79206 * 214.87590 * 17 16 15
37 37 H 1.09001 * 108.81447 * 197.42555 * 18 17 16
38 38 H 1.08998 * 108.73329 * 79.07680 * 18 17 16
39 39 H 1.08997 * 108.87737 * 197.51137 * 19 18 17
40 40 H 1.08994 * 108.87483 * 79.06334 * 19 18 17
41 41 H 1.08995 * 109.63026 * 334.44315 * 20 19 18
42 42 H 1.09006 * 109.62490 * 213.86402 * 20 19 18
43 43 H 1.09001 * 108.89568 * 303.43656 * 21 15 13
44 44 H 1.08998 * 108.89828 * 62.02612 * 21 15 13
45 45 H 1.07999 * 120.00241 * 0.02562 * 23 22 10
46 46 H 1.08000 * 119.99930 * 180.27688 * 24 23 22
47 47 H 1.08004 * 120.00001 * 179.83467 * 25 24 23
48 48 H 1.07999 * 120.00458 * 179.97438 * 26 25 24
49 49 H 1.08005 * 120.00239 * 359.97225 * 27 22 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4968 2.0462 -1.4000
5 1 1.4467 2.6527 0.7000
6 1 3.5467 1.4401 0.7002
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 1 2.9292 -3.5553 -0.8414
12 7 3.0062 -3.6540 1.2523
13 6 4.2308 -4.2147 1.3000
14 8 4.7030 -4.7256 0.3065
15 6 5.0163 -4.2009 2.5860
16 6 5.1806 -2.7408 3.0553
17 6 5.4882 -2.7438 4.5282
18 6 7.0014 -2.7050 4.8147
19 6 7.8106 -3.6213 3.8769
20 6 7.1408 -4.9497 3.6511
21 6 6.2951 -4.8595 2.3644
22 6 1.4956 -4.9637 -0.1233
23 6 0.8989 -5.5261 0.9895
24 6 0.2076 -6.7178 0.8751
25 6 0.1210 -7.3517 -0.3502
26 6 0.7222 -6.7919 -1.4620
27 6 1.4098 -5.5980 -1.3485
28 1 -0.4849 0.8401 -0.0004
29 1 0.6245 -2.5571 -0.8896
30 1 0.6239 -2.5567 0.8904
31 1 2.6287 -3.2451 2.0468
32 1 4.4613 -4.7535 3.3441
33 1 6.0001 -2.2713 2.5111
34 1 4.2561 -2.1921 2.8754
35 1 5.0677 -3.6450 4.9745
36 1 5.0201 -1.8725 4.9865
37 1 7.1723 -3.0174 5.8449
38 1 7.3541 -1.6805 4.6954
39 1 8.7946 -3.7922 4.3136
40 1 7.9352 -3.1213 2.9165
41 1 6.4953 -5.1829 4.4979
42 1 7.8970 -5.7266 3.5386
43 1 6.1131 -5.8670 1.9903
44 1 6.8547 -4.3006 1.6143
45 1 0.9694 -5.0327 1.9476
46 1 -0.2624 -7.1550 1.7437
47 1 -0.4168 -8.2841 -0.4391
48 1 0.6549 -7.2873 -2.4194
49 1 1.8796 -5.1606 -2.2171
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000153689371.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:00:11
Heat of formation + Delta-G solvation = -47.530500 kcal
Electronic energy + Delta-G solvation = -27054.866764 eV
Core-core repulsion = 23559.030540 eV
Total energy + Delta-G solvation = -3495.836224 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-40.20025 -38.91256 -37.57695 -35.18182 -32.85530 -32.48900 -32.11759 -30.79573
-30.40348 -28.76440 -25.58629 -24.87297 -24.33902 -22.29126 -21.96412 -21.46494
-19.89095 -19.49750 -19.25917 -17.12651 -16.60246 -16.16531 -15.75585 -15.43015
-14.92552 -14.71375 -14.55012 -14.47027 -13.89037 -13.59749 -13.54779 -13.11235
-12.99580 -12.93562 -12.65130 -12.51173 -12.13773 -12.10589 -12.05013 -11.55046
-11.12955 -11.10894 -10.94540 -10.73485 -10.72755 -10.62263 -10.59698 -10.56690
-10.43940 -10.34798 -10.15588 -9.77059 -9.31872 -9.12702 -8.53347 -8.45586
-8.35773 -8.16411 -6.09378 -4.12600 1.79560 1.81462 3.17353 3.26729
3.33902 3.36563 3.77697 4.25231 4.39406 4.63626 4.75047 4.82351
5.11396 5.15308 5.20160 5.26374 5.27468 5.27899 5.28526 5.34790
5.39999 5.42419 5.55746 5.70189 5.74361 5.87893 5.92214 5.95482
5.97652 6.07255 6.13955 6.16715 6.17360 6.22408 6.28839 6.35082
6.37893 6.45909 6.47810 6.51548 6.60168 6.85835 6.86583 6.96838
7.13582 7.41877 7.49992 7.64108 7.87521 8.19050 8.26796 8.84182
8.93360 9.52339 11.01190
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.007644 B = 0.005785 C = 0.003603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3662.075044 B = 4838.941799 C = 7769.847649
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.061 3.939
3 Si 0.890 3.110
4 H -0.281 1.281
5 H -0.287 1.287
6 H -0.273 1.273
7 C -0.519 4.519
8 H 0.058 0.942
9 C 0.024 3.976
10 C 0.183 3.817
11 H 0.085 0.915
12 N -0.700 5.700
13 C 0.511 3.489
14 O -0.552 6.552
15 C -0.098 4.098
16 C -0.113 4.113
17 C -0.117 4.117
18 C -0.116 4.116
19 C -0.121 4.121
20 C -0.114 4.114
21 C -0.103 4.103
22 C -0.070 4.070
23 C -0.108 4.108
24 C -0.125 4.125
25 C -0.136 4.136
26 C -0.123 4.123
27 C -0.109 4.109
28 H 0.261 0.739
29 H 0.033 0.967
30 H 0.024 0.976
31 H 0.400 0.600
32 H 0.089 0.911
33 H 0.071 0.929
34 H 0.078 0.922
35 H 0.061 0.939
36 H 0.062 0.938
37 H 0.056 0.944
38 H 0.057 0.943
39 H 0.054 0.946
40 H 0.062 0.938
41 H 0.064 0.936
42 H 0.061 0.939
43 H 0.065 0.935
44 H 0.067 0.933
45 H 0.116 0.884
46 H 0.114 0.886
47 H 0.113 0.887
48 H 0.116 0.884
49 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.942 -10.404 8.471 15.591
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.141 4.141
3 Si 0.718 3.282
4 H -0.207 1.207
5 H -0.213 1.213
6 H -0.198 1.198
7 C -0.557 4.557
8 H 0.076 0.924
9 C -0.013 4.013
10 C 0.079 3.921
11 H 0.103 0.897
12 N -0.348 5.348
13 C 0.297 3.703
14 O -0.431 6.431
15 C -0.120 4.120
16 C -0.151 4.151
17 C -0.155 4.155
18 C -0.154 4.154
19 C -0.158 4.158
20 C -0.152 4.152
21 C -0.141 4.141
22 C -0.071 4.071
23 C -0.127 4.127
24 C -0.143 4.143
25 C -0.154 4.154
26 C -0.141 4.141
27 C -0.127 4.127
28 H 0.071 0.929
29 H 0.051 0.949
30 H 0.042 0.958
31 H 0.235 0.765
32 H 0.107 0.893
33 H 0.090 0.910
34 H 0.097 0.903
35 H 0.080 0.920
36 H 0.081 0.919
37 H 0.074 0.926
38 H 0.076 0.924
39 H 0.073 0.927
40 H 0.081 0.919
41 H 0.083 0.917
42 H 0.080 0.920
43 H 0.084 0.916
44 H 0.086 0.914
45 H 0.134 0.866
46 H 0.132 0.868
47 H 0.131 0.869
48 H 0.134 0.866
49 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 8.114 -10.626 7.756 15.457
hybrid contribution 0.092 1.194 0.325 1.241
sum 8.206 -9.432 8.082 14.887
Atomic orbital electron populations
1.69961 1.06013 1.26762 1.50332 1.24981 0.94777 0.99174 0.95171
0.86618 0.79843 0.83481 0.78234 1.20661 1.21269 1.19826 1.21128
0.93067 0.90340 1.51145 0.92378 1.19385 0.93229 0.90199 0.98511
1.20230 0.93381 0.91824 0.86684 0.89655 1.45992 1.17011 1.57774
1.14064 1.20663 0.81752 0.77781 0.90155 1.90644 1.69651 1.45964
1.36822 1.20261 0.97359 0.98321 0.96039 1.21418 1.03280 0.94300
0.96075 1.21334 0.95803 1.02061 0.96275 1.21915 0.95065 0.99483
0.98928 1.21368 0.98346 0.95927 1.00166 1.21312 0.98976 0.97041
0.97835 1.20294 0.95049 1.01390 0.97388 1.20568 0.96706 0.96525
0.93283 1.20903 0.97676 0.95605 0.98482 1.21038 0.99888 0.96053
0.97345 1.20989 1.01125 1.00033 0.93239 1.21041 0.98569 0.96204
0.98271 1.21023 0.99138 0.95095 0.97469 0.92892 0.94883 0.95779
0.76515 0.89345 0.91026 0.90342 0.92027 0.91914 0.92564 0.92409
0.92699 0.91914 0.91736 0.92013 0.91612 0.91406 0.86600 0.86767
0.86869 0.86640 0.86236
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16
2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16
4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16
6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16
7 C -0.52 -13.60 8.84 -34.44 -0.30 -13.90 16
8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16
9 C 0.02 0.58 4.50 -27.88 -0.13 0.45 16
10 C 0.18 3.74 2.12 -69.08 -0.15 3.59 16
11 H 0.09 1.92 7.44 -51.93 -0.39 1.54 16
12 N -0.70 -12.51 3.72 -54.93 -0.20 -12.71 16
13 C 0.51 8.96 7.09 -10.98 -0.08 8.88 16
14 O -0.55 -11.64 15.44 5.55 0.09 -11.55 16
15 C -0.10 -1.31 2.04 -94.64 -0.19 -1.51 16
16 C -0.11 -1.43 4.94 -27.34 -0.14 -1.57 16
17 C -0.12 -1.21 5.31 -27.44 -0.15 -1.36 16
18 C -0.12 -1.10 5.85 -25.62 -0.15 -1.25 16
19 C -0.12 -1.17 5.31 -27.43 -0.15 -1.32 16
20 C -0.11 -1.14 5.61 -27.34 -0.15 -1.30 16
21 C -0.10 -1.32 3.84 -29.60 -0.11 -1.44 16
22 C -0.07 -1.30 4.91 -104.62 -0.51 -1.82 16
23 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16
24 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16
25 C -0.14 -1.96 10.05 -39.58 -0.40 -2.35 16
26 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16
27 C -0.11 -1.92 9.67 -39.58 -0.38 -2.31 16
28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16
29 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16
30 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16
31 H 0.40 6.59 7.76 -40.82 -0.32 6.27 16
32 H 0.09 1.04 7.46 -51.93 -0.39 0.65 16
33 H 0.07 0.96 6.98 -51.93 -0.36 0.60 16
34 H 0.08 1.10 6.92 -51.93 -0.36 0.74 16
35 H 0.06 0.59 6.63 -51.93 -0.34 0.24 16
36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16
39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
40 H 0.06 0.67 6.63 -51.93 -0.34 0.33 16
41 H 0.06 0.61 6.98 -51.93 -0.36 0.25 16
42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
43 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16
44 H 0.07 0.97 7.39 -51.93 -0.38 0.58 16
45 H 0.12 1.83 7.71 -52.49 -0.40 1.42 16
46 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16
47 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16
48 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16
49 H 0.12 2.04 8.04 -52.48 -0.42 1.62 16
LS Contribution 383.28 15.07 5.78 5.78
Total: -1.00 -30.24 383.28 -11.12 -41.36
By element:
Atomic # 1 Polarization: 16.60 SS G_CDS: -8.25 Total: 8.35 kcal
Atomic # 6 Polarization: -18.14 SS G_CDS: -4.25 Total: -22.39 kcal
Atomic # 7 Polarization: -37.97 SS G_CDS: 0.53 Total: -37.43 kcal
Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal
Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -30.24 -11.12 -41.36 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000153689371.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.170 kcal
(2) G-P(sol) polarization free energy of solvation -30.235 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.406 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.125 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.530 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds