Wall clock time and date at job start Tue Mar 31 2020 12:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00257 * 2 1 4 4 H 1.48493 * 109.47206 * 269.99574 * 3 2 1 5 5 H 1.48503 * 109.47464 * 29.99706 * 3 2 1 6 6 H 1.48507 * 109.47274 * 149.99356 * 3 2 1 7 7 C 1.37881 * 119.99597 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99650 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00042 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46638 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47009 * 304.99014 * 10 9 7 12 12 N 1.46497 * 109.47201 * 64.99927 * 10 9 7 13 13 C 1.34777 * 119.99525 * 204.99403 * 12 10 9 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 10 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 10 16 16 C 1.54242 * 108.89772 * 303.16043 * 15 13 12 17 17 C 1.50470 * 108.52596 * 159.26646 * 16 15 13 18 18 C 1.54061 * 112.50202 * 94.15584 * 17 16 15 19 19 C 1.54075 * 112.81344 * 318.28115 * 18 17 16 20 20 C 1.50476 * 112.49228 * 318.28552 * 19 18 17 21 21 C 1.45541 * 108.89530 * 180.27986 * 15 13 12 22 22 C 1.50707 * 109.46378 * 184.99777 * 10 9 7 23 23 C 1.38229 * 119.99911 * 279.72032 * 22 10 9 24 24 C 1.38238 * 119.99869 * 179.79104 * 23 22 10 25 25 C 1.38232 * 119.99878 * 0.44627 * 24 23 22 26 26 C 1.38236 * 120.00189 * 359.80920 * 25 24 23 27 27 C 1.38236 * 119.99750 * 100.00494 * 22 10 9 28 28 H 0.97004 * 119.99455 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47319 * 59.99552 * 9 7 2 30 30 H 1.09001 * 109.46713 * 299.99596 * 9 7 2 31 31 H 0.97000 * 120.00580 * 25.00149 * 12 10 9 32 32 H 1.08998 * 108.87448 * 61.67243 * 15 13 12 33 33 H 1.09004 * 109.62849 * 278.97974 * 16 15 13 34 34 H 1.09004 * 109.62776 * 39.55325 * 16 15 13 35 35 H 1.09001 * 108.87935 * 333.36746 * 17 16 15 36 36 H 1.09007 * 108.79206 * 214.87590 * 17 16 15 37 37 H 1.09001 * 108.81447 * 197.42555 * 18 17 16 38 38 H 1.08998 * 108.73329 * 79.07680 * 18 17 16 39 39 H 1.08997 * 108.87737 * 197.51137 * 19 18 17 40 40 H 1.08994 * 108.87483 * 79.06334 * 19 18 17 41 41 H 1.08995 * 109.63026 * 334.44315 * 20 19 18 42 42 H 1.09006 * 109.62490 * 213.86402 * 20 19 18 43 43 H 1.09001 * 108.89568 * 303.43656 * 21 15 13 44 44 H 1.08998 * 108.89828 * 62.02612 * 21 15 13 45 45 H 1.07999 * 120.00241 * 0.02562 * 23 22 10 46 46 H 1.08000 * 119.99930 * 180.27688 * 24 23 22 47 47 H 1.08004 * 120.00001 * 179.83467 * 25 24 23 48 48 H 1.07999 * 120.00458 * 179.97438 * 26 25 24 49 49 H 1.08005 * 120.00239 * 359.97225 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9292 -3.5553 -0.8414 12 7 3.0062 -3.6540 1.2523 13 6 4.2308 -4.2147 1.3000 14 8 4.7030 -4.7256 0.3065 15 6 5.0163 -4.2009 2.5860 16 6 5.1806 -2.7408 3.0553 17 6 5.4882 -2.7438 4.5282 18 6 7.0014 -2.7050 4.8147 19 6 7.8106 -3.6213 3.8769 20 6 7.1408 -4.9497 3.6511 21 6 6.2951 -4.8595 2.3644 22 6 1.4956 -4.9637 -0.1233 23 6 0.8989 -5.5261 0.9895 24 6 0.2076 -6.7178 0.8751 25 6 0.1210 -7.3517 -0.3502 26 6 0.7222 -6.7919 -1.4620 27 6 1.4098 -5.5980 -1.3485 28 1 -0.4849 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8904 31 1 2.6287 -3.2451 2.0468 32 1 4.4613 -4.7535 3.3441 33 1 6.0001 -2.2713 2.5111 34 1 4.2561 -2.1921 2.8754 35 1 5.0677 -3.6450 4.9745 36 1 5.0201 -1.8725 4.9865 37 1 7.1723 -3.0174 5.8449 38 1 7.3541 -1.6805 4.6954 39 1 8.7946 -3.7922 4.3136 40 1 7.9352 -3.1213 2.9165 41 1 6.4953 -5.1829 4.4979 42 1 7.8970 -5.7266 3.5386 43 1 6.1131 -5.8670 1.9903 44 1 6.8547 -4.3006 1.6143 45 1 0.9694 -5.0327 1.9476 46 1 -0.2624 -7.1550 1.7437 47 1 -0.4168 -8.2841 -0.4391 48 1 0.6549 -7.2873 -2.4194 49 1 1.8796 -5.1606 -2.2171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153689371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:10 Heat of formation + Delta-G solvation = -62.011764 kcal Electronic energy + Delta-G solvation = -27055.494719 eV Core-core repulsion = 23559.030540 eV Total energy + Delta-G solvation = -3496.464179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.52777 -40.14984 -38.75209 -36.79753 -34.75276 -33.66972 -33.08216 -32.09498 -31.66561 -30.53058 -27.04647 -26.04361 -25.44953 -23.80353 -23.41553 -22.63997 -21.31405 -20.80728 -20.09947 -18.72426 -18.19078 -17.67659 -17.09573 -16.66295 -16.47821 -16.15015 -15.80282 -15.52925 -15.09459 -14.91800 -14.72048 -14.43498 -14.22317 -14.16091 -14.03828 -13.86436 -13.67786 -13.42266 -13.11298 -12.98997 -12.90234 -12.66077 -12.46824 -12.17036 -12.11627 -11.88355 -11.72379 -11.61880 -11.52479 -11.42467 -11.32264 -11.18517 -11.06256 -10.67120 -10.50399 -9.93966 -9.76214 -9.52320 -8.20999 -6.30952 0.50651 0.54997 1.37976 1.39824 1.49705 1.75167 2.37599 2.38942 2.97005 3.13302 3.67999 3.70904 3.85901 3.99237 4.02634 4.16037 4.20372 4.24594 4.28975 4.31456 4.38205 4.44265 4.46107 4.48519 4.64702 4.69726 4.77728 4.78243 4.95750 4.99986 5.04546 5.11929 5.15088 5.19248 5.25793 5.29003 5.34852 5.37434 5.38859 5.42729 5.42817 5.52371 5.60444 5.61559 5.62655 5.63678 5.77168 5.91607 6.15409 6.19939 6.73905 6.81344 7.37329 7.40290 8.89784 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.007644 B = 0.005785 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3662.075044 B = 4838.941799 C = 7769.847649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.039 3.961 10 C 0.199 3.801 11 H 0.053 0.947 12 N -0.695 5.695 13 C 0.506 3.494 14 O -0.592 6.592 15 C -0.086 4.086 16 C -0.109 4.109 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.121 4.121 20 C -0.105 4.105 21 C -0.100 4.100 22 C -0.097 4.097 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.129 4.129 26 C -0.124 4.124 27 C -0.135 4.135 28 H 0.264 0.736 29 H 0.001 0.999 30 H 0.013 0.987 31 H 0.407 0.593 32 H 0.114 0.886 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.045 0.955 45 H 0.122 0.878 46 H 0.148 0.852 47 H 0.152 0.848 48 H 0.143 0.857 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.318 -11.694 10.754 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.002 3.998 10 C 0.093 3.907 11 H 0.071 0.929 12 N -0.344 5.344 13 C 0.294 3.706 14 O -0.473 6.473 15 C -0.107 4.107 16 C -0.147 4.147 17 C -0.152 4.152 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.142 4.142 21 C -0.138 4.138 22 C -0.098 4.098 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.147 4.147 26 C -0.142 4.142 27 C -0.154 4.154 28 H 0.073 0.927 29 H 0.019 0.981 30 H 0.031 0.969 31 H 0.243 0.757 32 H 0.132 0.868 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.140 0.860 46 H 0.166 0.834 47 H 0.170 0.830 48 H 0.161 0.839 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.495 -11.913 10.060 17.756 hybrid contribution -0.065 1.529 -0.458 1.597 sum 8.430 -10.385 9.602 16.465 Atomic orbital electron populations 1.70071 1.07440 1.27698 1.51307 1.25752 0.95544 1.02546 0.94781 0.85622 0.78909 0.79393 0.78197 1.20612 1.20494 1.18906 1.21363 0.92899 0.91522 1.50709 0.92952 1.19120 0.93249 0.91189 0.96287 1.19702 0.92145 0.92004 0.86813 0.92890 1.45901 1.17248 1.57890 1.13328 1.21491 0.81306 0.76532 0.91301 1.90619 1.70330 1.47643 1.38728 1.20292 0.97136 0.99329 0.93932 1.21374 1.02010 0.93219 0.98050 1.21313 0.96822 1.03057 0.93986 1.21911 0.94072 0.99412 0.99808 1.21366 0.99296 0.95597 0.99596 1.21271 0.98932 0.97659 0.96355 1.20271 0.94899 1.00003 0.98622 1.20457 0.98366 0.96264 0.94756 1.21073 0.98143 0.96732 0.98019 1.21450 0.98748 0.94952 0.98963 1.21473 0.99931 1.00941 0.92380 1.21383 0.97518 0.95089 1.00176 1.21170 1.00569 0.96704 0.96954 0.92727 0.98079 0.96913 0.75675 0.86795 0.92317 0.91933 0.90515 0.91475 0.90674 0.92623 0.91078 0.93634 0.90196 0.90876 0.92928 0.93662 0.86036 0.83430 0.83041 0.83924 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.07 13.29 21.45 0.28 -53.79 16 2 C 0.01 0.69 5.46 84.66 0.46 1.15 16 3 Si 0.95 43.47 29.54 68.60 2.03 45.49 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.53 -28.74 8.84 25.60 0.23 -28.51 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.04 1.98 4.50 29.85 0.13 2.11 16 10 C 0.20 8.66 2.12 44.25 0.09 8.75 16 11 H 0.05 2.61 7.44 -2.39 -0.02 2.59 16 12 N -0.69 -25.96 3.72 -446.09 -1.66 -27.62 16 13 C 0.51 18.40 7.09 87.66 0.62 19.02 16 14 O -0.59 -26.29 15.44 -3.04 -0.05 -26.34 16 15 C -0.09 -2.26 2.04 -13.40 -0.03 -2.28 16 16 C -0.11 -2.71 4.94 30.20 0.15 -2.56 16 17 C -0.11 -2.10 5.31 30.13 0.16 -1.94 16 18 C -0.11 -1.87 5.85 31.32 0.18 -1.68 16 19 C -0.12 -2.11 5.31 30.14 0.16 -1.95 16 20 C -0.10 -1.87 5.61 30.20 0.17 -1.70 16 21 C -0.10 -2.53 3.84 28.74 0.11 -2.42 16 22 C -0.10 -3.80 4.91 -19.86 -0.10 -3.90 16 23 C -0.12 -4.08 9.33 22.27 0.21 -3.88 16 24 C -0.12 -3.39 10.05 22.27 0.22 -3.17 16 25 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 26 C -0.12 -3.64 10.05 22.27 0.22 -3.42 16 27 C -0.14 -4.98 9.67 22.27 0.22 -4.76 16 28 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.41 13.86 7.76 -92.71 -0.72 13.14 16 32 H 0.11 2.45 7.46 -2.39 -0.02 2.43 16 33 H 0.06 1.60 6.98 -2.39 -0.02 1.59 16 34 H 0.06 1.76 6.92 -2.39 -0.02 1.74 16 35 H 0.08 1.20 6.63 -2.39 -0.02 1.18 16 36 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.04 0.95 6.63 -2.39 -0.02 0.94 16 41 H 0.08 1.22 6.98 -2.39 -0.02 1.20 16 42 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.05 1.46 7.87 -2.39 -0.02 1.44 16 44 H 0.04 1.34 7.39 -2.39 -0.02 1.32 16 45 H 0.12 3.81 7.71 -2.91 -0.02 3.79 16 46 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 47 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 48 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 49 H 0.11 4.06 8.04 -2.91 -0.02 4.04 16 Total: -1.00 -68.31 383.28 4.25 -64.06 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.20 Total: 32.45 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 3.44 Total: -34.26 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -1.37 Total: -81.41 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.05 Total: -26.34 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -68.31 4.25 -64.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153689371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.049 kcal (2) G-P(sol) polarization free energy of solvation -68.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds