Wall clock time and date at job start Tue Mar 31 2020 12:00:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86793 * 120.00257 * 2 1
4 4 H 1.48493 * 109.47206 * 269.99574 * 3 2 1
5 5 H 1.48503 * 109.47464 * 29.99706 * 3 2 1
6 6 H 1.48507 * 109.47274 * 149.99356 * 3 2 1
7 7 C 1.37881 * 119.99597 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99650 * 180.02562 * 7 2 1
9 9 C 1.50702 * 120.00042 * 0.02562 * 7 2 1
10 10 C 1.53001 * 109.46638 * 179.97438 * 9 7 2
11 11 H 1.09001 * 109.47009 * 304.99014 * 10 9 7
12 12 N 1.46497 * 109.47201 * 64.99927 * 10 9 7
13 13 C 1.34777 * 119.99525 * 204.99403 * 12 10 9
14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 10
15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 10
16 16 C 1.54242 * 108.89772 * 303.16043 * 15 13 12
17 17 C 1.50470 * 108.52596 * 159.26646 * 16 15 13
18 18 C 1.54061 * 112.50202 * 94.15584 * 17 16 15
19 19 C 1.54075 * 112.81344 * 318.28115 * 18 17 16
20 20 C 1.50476 * 112.49228 * 318.28552 * 19 18 17
21 21 C 1.45541 * 108.89530 * 180.27986 * 15 13 12
22 22 C 1.50707 * 109.46378 * 184.99777 * 10 9 7
23 23 C 1.38229 * 119.99911 * 279.72032 * 22 10 9
24 24 C 1.38238 * 119.99869 * 179.79104 * 23 22 10
25 25 C 1.38232 * 119.99878 * 0.44627 * 24 23 22
26 26 C 1.38236 * 120.00189 * 359.80920 * 25 24 23
27 27 C 1.38236 * 119.99750 * 100.00494 * 22 10 9
28 28 H 0.97004 * 119.99455 * 0.02562 * 1 2 3
29 29 H 1.09000 * 109.47319 * 59.99552 * 9 7 2
30 30 H 1.09001 * 109.46713 * 299.99596 * 9 7 2
31 31 H 0.97000 * 120.00580 * 25.00149 * 12 10 9
32 32 H 1.08998 * 108.87448 * 61.67243 * 15 13 12
33 33 H 1.09004 * 109.62849 * 278.97974 * 16 15 13
34 34 H 1.09004 * 109.62776 * 39.55325 * 16 15 13
35 35 H 1.09001 * 108.87935 * 333.36746 * 17 16 15
36 36 H 1.09007 * 108.79206 * 214.87590 * 17 16 15
37 37 H 1.09001 * 108.81447 * 197.42555 * 18 17 16
38 38 H 1.08998 * 108.73329 * 79.07680 * 18 17 16
39 39 H 1.08997 * 108.87737 * 197.51137 * 19 18 17
40 40 H 1.08994 * 108.87483 * 79.06334 * 19 18 17
41 41 H 1.08995 * 109.63026 * 334.44315 * 20 19 18
42 42 H 1.09006 * 109.62490 * 213.86402 * 20 19 18
43 43 H 1.09001 * 108.89568 * 303.43656 * 21 15 13
44 44 H 1.08998 * 108.89828 * 62.02612 * 21 15 13
45 45 H 1.07999 * 120.00241 * 0.02562 * 23 22 10
46 46 H 1.08000 * 119.99930 * 180.27688 * 24 23 22
47 47 H 1.08004 * 120.00001 * 179.83467 * 25 24 23
48 48 H 1.07999 * 120.00458 * 179.97438 * 26 25 24
49 49 H 1.08005 * 120.00239 * 359.97225 * 27 22 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4968 2.0462 -1.4000
5 1 1.4467 2.6527 0.7000
6 1 3.5467 1.4401 0.7002
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 1 2.9292 -3.5553 -0.8414
12 7 3.0062 -3.6540 1.2523
13 6 4.2308 -4.2147 1.3000
14 8 4.7030 -4.7256 0.3065
15 6 5.0163 -4.2009 2.5860
16 6 5.1806 -2.7408 3.0553
17 6 5.4882 -2.7438 4.5282
18 6 7.0014 -2.7050 4.8147
19 6 7.8106 -3.6213 3.8769
20 6 7.1408 -4.9497 3.6511
21 6 6.2951 -4.8595 2.3644
22 6 1.4956 -4.9637 -0.1233
23 6 0.8989 -5.5261 0.9895
24 6 0.2076 -6.7178 0.8751
25 6 0.1210 -7.3517 -0.3502
26 6 0.7222 -6.7919 -1.4620
27 6 1.4098 -5.5980 -1.3485
28 1 -0.4849 0.8401 -0.0004
29 1 0.6245 -2.5571 -0.8896
30 1 0.6239 -2.5567 0.8904
31 1 2.6287 -3.2451 2.0468
32 1 4.4613 -4.7535 3.3441
33 1 6.0001 -2.2713 2.5111
34 1 4.2561 -2.1921 2.8754
35 1 5.0677 -3.6450 4.9745
36 1 5.0201 -1.8725 4.9865
37 1 7.1723 -3.0174 5.8449
38 1 7.3541 -1.6805 4.6954
39 1 8.7946 -3.7922 4.3136
40 1 7.9352 -3.1213 2.9165
41 1 6.4953 -5.1829 4.4979
42 1 7.8970 -5.7266 3.5386
43 1 6.1131 -5.8670 1.9903
44 1 6.8547 -4.3006 1.6143
45 1 0.9694 -5.0327 1.9476
46 1 -0.2624 -7.1550 1.7437
47 1 -0.4168 -8.2841 -0.4391
48 1 0.6549 -7.2873 -2.4194
49 1 1.8796 -5.1606 -2.2171
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000153689371.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:00:10
Heat of formation + Delta-G solvation = -62.011764 kcal
Electronic energy + Delta-G solvation = -27055.494719 eV
Core-core repulsion = 23559.030540 eV
Total energy + Delta-G solvation = -3496.464179 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.52777 -40.14984 -38.75209 -36.79753 -34.75276 -33.66972 -33.08216 -32.09498
-31.66561 -30.53058 -27.04647 -26.04361 -25.44953 -23.80353 -23.41553 -22.63997
-21.31405 -20.80728 -20.09947 -18.72426 -18.19078 -17.67659 -17.09573 -16.66295
-16.47821 -16.15015 -15.80282 -15.52925 -15.09459 -14.91800 -14.72048 -14.43498
-14.22317 -14.16091 -14.03828 -13.86436 -13.67786 -13.42266 -13.11298 -12.98997
-12.90234 -12.66077 -12.46824 -12.17036 -12.11627 -11.88355 -11.72379 -11.61880
-11.52479 -11.42467 -11.32264 -11.18517 -11.06256 -10.67120 -10.50399 -9.93966
-9.76214 -9.52320 -8.20999 -6.30952 0.50651 0.54997 1.37976 1.39824
1.49705 1.75167 2.37599 2.38942 2.97005 3.13302 3.67999 3.70904
3.85901 3.99237 4.02634 4.16037 4.20372 4.24594 4.28975 4.31456
4.38205 4.44265 4.46107 4.48519 4.64702 4.69726 4.77728 4.78243
4.95750 4.99986 5.04546 5.11929 5.15088 5.19248 5.25793 5.29003
5.34852 5.37434 5.38859 5.42729 5.42817 5.52371 5.60444 5.61559
5.62655 5.63678 5.77168 5.91607 6.15409 6.19939 6.73905 6.81344
7.37329 7.40290 8.89784
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.007644 B = 0.005785 C = 0.003603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3662.075044 B = 4838.941799 C = 7769.847649
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C 0.013 3.987
3 Si 0.953 3.047
4 H -0.280 1.280
5 H -0.280 1.280
6 H -0.265 1.265
7 C -0.527 4.527
8 H 0.052 0.948
9 C 0.039 3.961
10 C 0.199 3.801
11 H 0.053 0.947
12 N -0.695 5.695
13 C 0.506 3.494
14 O -0.592 6.592
15 C -0.086 4.086
16 C -0.109 4.109
17 C -0.114 4.114
18 C -0.114 4.114
19 C -0.121 4.121
20 C -0.105 4.105
21 C -0.100 4.100
22 C -0.097 4.097
23 C -0.121 4.121
24 C -0.123 4.123
25 C -0.129 4.129
26 C -0.124 4.124
27 C -0.135 4.135
28 H 0.264 0.736
29 H 0.001 0.999
30 H 0.013 0.987
31 H 0.407 0.593
32 H 0.114 0.886
33 H 0.058 0.942
34 H 0.062 0.938
35 H 0.076 0.924
36 H 0.067 0.933
37 H 0.075 0.925
38 H 0.055 0.945
39 H 0.071 0.929
40 H 0.045 0.955
41 H 0.079 0.921
42 H 0.073 0.927
43 H 0.052 0.948
44 H 0.045 0.955
45 H 0.122 0.878
46 H 0.148 0.852
47 H 0.152 0.848
48 H 0.143 0.857
49 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.318 -11.694 10.754 17.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.186 4.186
3 Si 0.779 3.221
4 H -0.206 1.206
5 H -0.205 1.205
6 H -0.189 1.189
7 C -0.565 4.565
8 H 0.070 0.930
9 C 0.002 3.998
10 C 0.093 3.907
11 H 0.071 0.929
12 N -0.344 5.344
13 C 0.294 3.706
14 O -0.473 6.473
15 C -0.107 4.107
16 C -0.147 4.147
17 C -0.152 4.152
18 C -0.152 4.152
19 C -0.159 4.159
20 C -0.142 4.142
21 C -0.138 4.138
22 C -0.098 4.098
23 C -0.140 4.140
24 C -0.141 4.141
25 C -0.147 4.147
26 C -0.142 4.142
27 C -0.154 4.154
28 H 0.073 0.927
29 H 0.019 0.981
30 H 0.031 0.969
31 H 0.243 0.757
32 H 0.132 0.868
33 H 0.077 0.923
34 H 0.081 0.919
35 H 0.095 0.905
36 H 0.085 0.915
37 H 0.093 0.907
38 H 0.074 0.926
39 H 0.089 0.911
40 H 0.064 0.936
41 H 0.098 0.902
42 H 0.091 0.909
43 H 0.071 0.929
44 H 0.063 0.937
45 H 0.140 0.860
46 H 0.166 0.834
47 H 0.170 0.830
48 H 0.161 0.839
49 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 8.495 -11.913 10.060 17.756
hybrid contribution -0.065 1.529 -0.458 1.597
sum 8.430 -10.385 9.602 16.465
Atomic orbital electron populations
1.70071 1.07440 1.27698 1.51307 1.25752 0.95544 1.02546 0.94781
0.85622 0.78909 0.79393 0.78197 1.20612 1.20494 1.18906 1.21363
0.92899 0.91522 1.50709 0.92952 1.19120 0.93249 0.91189 0.96287
1.19702 0.92145 0.92004 0.86813 0.92890 1.45901 1.17248 1.57890
1.13328 1.21491 0.81306 0.76532 0.91301 1.90619 1.70330 1.47643
1.38728 1.20292 0.97136 0.99329 0.93932 1.21374 1.02010 0.93219
0.98050 1.21313 0.96822 1.03057 0.93986 1.21911 0.94072 0.99412
0.99808 1.21366 0.99296 0.95597 0.99596 1.21271 0.98932 0.97659
0.96355 1.20271 0.94899 1.00003 0.98622 1.20457 0.98366 0.96264
0.94756 1.21073 0.98143 0.96732 0.98019 1.21450 0.98748 0.94952
0.98963 1.21473 0.99931 1.00941 0.92380 1.21383 0.97518 0.95089
1.00176 1.21170 1.00569 0.96704 0.96954 0.92727 0.98079 0.96913
0.75675 0.86795 0.92317 0.91933 0.90515 0.91475 0.90674 0.92623
0.91078 0.93634 0.90196 0.90876 0.92928 0.93662 0.86036 0.83430
0.83041 0.83924 0.87232
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.07 13.29 21.45 0.28 -53.79 16
2 C 0.01 0.69 5.46 84.66 0.46 1.15 16
3 Si 0.95 43.47 29.54 68.60 2.03 45.49 16
4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16
5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16
6 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16
7 C -0.53 -28.74 8.84 25.60 0.23 -28.51 16
8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16
9 C 0.04 1.98 4.50 29.85 0.13 2.11 16
10 C 0.20 8.66 2.12 44.25 0.09 8.75 16
11 H 0.05 2.61 7.44 -2.39 -0.02 2.59 16
12 N -0.69 -25.96 3.72 -446.09 -1.66 -27.62 16
13 C 0.51 18.40 7.09 87.66 0.62 19.02 16
14 O -0.59 -26.29 15.44 -3.04 -0.05 -26.34 16
15 C -0.09 -2.26 2.04 -13.40 -0.03 -2.28 16
16 C -0.11 -2.71 4.94 30.20 0.15 -2.56 16
17 C -0.11 -2.10 5.31 30.13 0.16 -1.94 16
18 C -0.11 -1.87 5.85 31.32 0.18 -1.68 16
19 C -0.12 -2.11 5.31 30.14 0.16 -1.95 16
20 C -0.10 -1.87 5.61 30.20 0.17 -1.70 16
21 C -0.10 -2.53 3.84 28.74 0.11 -2.42 16
22 C -0.10 -3.80 4.91 -19.86 -0.10 -3.90 16
23 C -0.12 -4.08 9.33 22.27 0.21 -3.88 16
24 C -0.12 -3.39 10.05 22.27 0.22 -3.17 16
25 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16
26 C -0.12 -3.64 10.05 22.27 0.22 -3.42 16
27 C -0.14 -4.98 9.67 22.27 0.22 -4.76 16
28 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16
29 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16
30 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16
31 H 0.41 13.86 7.76 -92.71 -0.72 13.14 16
32 H 0.11 2.45 7.46 -2.39 -0.02 2.43 16
33 H 0.06 1.60 6.98 -2.39 -0.02 1.59 16
34 H 0.06 1.76 6.92 -2.39 -0.02 1.74 16
35 H 0.08 1.20 6.63 -2.39 -0.02 1.18 16
36 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16
37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16
39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16
40 H 0.04 0.95 6.63 -2.39 -0.02 0.94 16
41 H 0.08 1.22 6.98 -2.39 -0.02 1.20 16
42 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16
43 H 0.05 1.46 7.87 -2.39 -0.02 1.44 16
44 H 0.04 1.34 7.39 -2.39 -0.02 1.32 16
45 H 0.12 3.81 7.71 -2.91 -0.02 3.79 16
46 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16
47 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16
48 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16
49 H 0.11 4.06 8.04 -2.91 -0.02 4.04 16
Total: -1.00 -68.31 383.28 4.25 -64.06
By element:
Atomic # 1 Polarization: 32.25 SS G_CDS: 0.20 Total: 32.45 kcal
Atomic # 6 Polarization: -37.70 SS G_CDS: 3.44 Total: -34.26 kcal
Atomic # 7 Polarization: -80.04 SS G_CDS: -1.37 Total: -81.41 kcal
Atomic # 8 Polarization: -26.29 SS G_CDS: -0.05 Total: -26.34 kcal
Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal
Total: -68.31 4.25 -64.06 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000153689371.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.049 kcal
(2) G-P(sol) polarization free energy of solvation -68.308 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.259 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.060 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.012 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds