Wall clock time and date at job start Tue Mar 31 2020 11:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00093 * 2 1 4 4 H 1.48507 * 109.47145 * 269.99831 * 3 2 1 5 5 H 1.48496 * 109.47223 * 29.99571 * 3 2 1 6 6 H 1.48500 * 109.47424 * 149.99935 * 3 2 1 7 7 C 1.38815 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00360 * 198.20941 * 7 2 1 9 9 N 1.36937 * 119.99701 * 18.21750 * 7 2 1 10 10 C 1.46501 * 120.00112 * 39.50395 * 9 7 2 11 11 C 1.50699 * 109.47274 * 90.00162 * 10 9 7 12 12 C 1.37880 * 120.14412 * 104.99822 * 11 10 9 13 13 C 1.38910 * 120.62404 * 179.97438 * 12 11 10 14 14 C 1.37754 * 119.77025 * 359.84726 * 13 12 11 15 15 C 1.38782 * 119.73633 * 0.30598 * 14 13 12 16 16 C 1.38468 * 120.50522 * 359.74946 * 15 14 13 17 17 O 1.35905 * 120.17642 * 180.02562 * 16 15 14 18 18 C 1.50647 * 122.55845 * 180.69384 * 14 13 12 19 19 C 1.52726 * 110.58611 * 342.18641 * 18 14 13 20 20 C 1.53323 * 108.38124 * 51.13567 * 19 18 14 21 21 C 1.50654 * 117.70170 * 179.78350 * 13 12 11 22 22 C 1.46503 * 120.00371 * 219.50569 * 9 7 2 23 23 C 1.54265 * 110.02946 * 59.85830 * 22 9 7 24 24 C 1.54968 * 104.16302 * 217.13998 * 23 22 9 25 25 C 1.54887 * 102.77352 * 37.88902 * 24 23 22 26 26 C 1.53879 * 110.02994 * 302.64815 * 22 9 7 27 27 H 0.97000 * 120.00058 * 354.94352 * 1 2 3 28 28 H 1.09003 * 109.47221 * 330.00548 * 10 9 7 29 29 H 1.09005 * 109.47362 * 210.00159 * 10 9 7 30 30 H 1.07998 * 119.68396 * 359.97438 * 12 11 10 31 31 H 1.08004 * 119.74985 * 179.76467 * 15 14 13 32 32 H 0.96700 * 113.99996 * 270.02125 * 17 16 15 33 33 H 1.09000 * 109.24342 * 221.90241 * 18 14 13 34 34 H 1.08994 * 109.25699 * 102.47549 * 18 14 13 35 35 H 1.09004 * 109.67909 * 291.41459 * 19 18 14 36 36 H 1.08998 * 109.68152 * 170.86066 * 19 18 14 37 37 H 1.08998 * 109.68098 * 49.82548 * 20 19 18 38 38 H 1.08999 * 109.68203 * 170.33693 * 20 19 18 39 39 H 1.09004 * 109.24682 * 41.97111 * 21 13 12 40 40 H 1.08998 * 109.21870 * 282.53423 * 21 13 12 41 41 H 1.08994 * 110.02360 * 181.25273 * 22 9 7 42 42 H 1.09004 * 110.49037 * 335.78785 * 23 22 9 43 43 H 1.09007 * 110.48498 * 98.42752 * 23 22 9 44 44 H 1.08995 * 110.71860 * 279.57568 * 24 23 22 45 45 H 1.08997 * 110.92277 * 156.29868 * 24 23 22 46 46 H 1.09003 * 110.48569 * 203.40560 * 25 24 23 47 47 H 1.09001 * 110.59901 * 80.82064 * 25 24 23 48 48 H 1.08999 * 110.02872 * 238.56378 * 26 22 9 49 49 H 1.09001 * 110.03371 * 359.97438 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0497 -1.2254 0.2928 9 7 1.3771 -2.3585 -0.3697 10 6 0.4303 -2.3496 -1.4877 11 6 1.1656 -2.6388 -2.7709 12 6 1.0534 -3.8759 -3.3695 13 6 1.7263 -4.1531 -4.5527 14 6 2.5110 -3.1831 -5.1367 15 6 2.6284 -1.9381 -4.5348 16 6 1.9587 -1.6619 -3.3548 17 8 2.0780 -0.4402 -2.7714 18 6 3.2556 -3.4105 -6.4264 19 6 3.3765 -4.9044 -6.7204 20 6 1.9818 -5.5324 -6.6150 21 6 1.5610 -5.5275 -5.1469 22 6 1.6463 -3.6046 0.3521 23 6 1.2742 -3.4439 1.8406 24 6 2.3644 -4.2483 2.5929 25 6 3.6410 -3.9488 1.7686 26 6 3.1505 -3.9258 0.3062 27 1 -0.4850 0.8368 0.0740 28 1 -0.0446 -1.3707 -1.5538 29 1 -0.3310 -3.1126 -1.3252 30 1 0.4366 -4.6364 -2.9141 31 1 3.2467 -1.1787 -4.9905 32 1 2.8081 -0.3752 -2.1406 33 1 4.2528 -2.9779 -6.3466 34 1 2.7185 -2.9261 -7.2417 35 1 4.0440 -5.3685 -5.9942 36 1 3.7697 -5.0498 -7.7265 37 1 1.2718 -4.9502 -7.2024 38 1 2.0116 -6.5570 -6.9855 39 1 0.5159 -5.8282 -5.0716 40 1 2.1790 -6.2344 -4.5935 41 1 1.0763 -4.4221 -0.0891 42 1 1.3068 -2.3938 2.1309 43 1 0.2871 -3.8638 2.0345 44 1 2.1363 -5.3140 2.5783 45 1 2.4735 -3.8922 3.6173 46 1 4.3804 -4.7370 1.9106 47 1 4.0585 -2.9810 2.0462 48 1 3.3103 -4.8997 -0.1565 49 1 3.6801 -3.1548 -0.2535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160274123.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:32 Heat of formation + Delta-G solvation = -25.528354 kcal Electronic energy + Delta-G solvation = -27916.895851 eV Core-core repulsion = 24422.013712 eV Total energy + Delta-G solvation = -3494.882140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.74768 -37.80989 -37.01036 -34.67849 -34.03915 -32.11217 -31.15668 -29.62127 -27.97210 -27.82593 -26.65957 -25.48617 -23.15787 -22.54876 -21.78045 -21.08126 -19.88758 -19.06271 -18.86418 -16.99106 -16.20794 -15.83200 -15.27815 -14.87455 -14.83702 -14.67937 -14.09934 -13.95780 -13.74863 -13.60226 -13.29116 -12.87577 -12.62294 -12.58737 -12.53182 -12.24871 -11.98004 -11.62744 -11.14486 -11.01796 -10.87586 -10.84249 -10.72698 -10.64026 -10.40659 -10.38737 -10.29691 -10.25119 -10.23564 -10.02487 -9.86369 -9.80273 -9.46690 -9.40715 -8.43277 -8.02542 -7.55306 -6.47153 -5.79696 -3.37078 1.94592 1.99797 3.35991 3.40941 3.46180 4.21411 4.47336 4.81779 4.87559 4.94447 5.19331 5.32121 5.34750 5.42806 5.47629 5.48099 5.50979 5.58068 5.66398 5.69209 5.71986 5.81088 5.92249 5.93703 6.03212 6.09439 6.13257 6.15206 6.28995 6.33540 6.34388 6.35883 6.46598 6.51975 6.58068 6.62877 6.64381 6.74335 6.78079 6.88758 6.98521 7.02445 7.18105 7.22899 7.40650 7.44459 7.56666 7.74748 7.86414 8.57128 8.73342 9.21293 9.83896 10.44510 11.22834 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012623 B = 0.005293 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.600582 B = 5289.105454 C = 6610.531620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.038 3.962 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.268 4.268 8 H 0.060 0.940 9 N -0.568 5.568 10 C 0.180 3.820 11 C -0.098 4.098 12 C -0.113 4.113 13 C -0.098 4.098 14 C -0.083 4.083 15 C -0.163 4.163 16 C 0.135 3.865 17 O -0.485 6.485 18 C -0.074 4.074 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.074 4.074 22 C 0.173 3.827 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.117 4.117 26 C -0.131 4.131 27 H 0.256 0.744 28 H 0.111 0.889 29 H 0.028 0.972 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.389 0.611 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.061 0.939 48 H 0.041 0.959 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.847 -9.694 -7.753 13.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.165 4.165 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.398 4.398 8 H 0.077 0.923 9 N -0.287 5.287 10 C 0.054 3.946 11 C -0.101 4.101 12 C -0.133 4.133 13 C -0.098 4.098 14 C -0.084 4.084 15 C -0.182 4.182 16 C 0.089 3.911 17 O -0.298 6.298 18 C -0.111 4.111 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.111 4.111 22 C 0.066 3.934 23 C -0.168 4.168 24 C -0.162 4.162 25 C -0.154 4.154 26 C -0.170 4.170 27 H 0.067 0.933 28 H 0.128 0.872 29 H 0.046 0.954 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.249 0.751 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.060 0.940 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.216 -9.382 -8.118 13.103 hybrid contribution 0.869 0.864 0.416 1.294 sum 5.086 -8.518 -7.702 12.560 Atomic orbital electron populations 1.69792 1.05712 1.25993 1.50438 1.25172 0.94884 0.98114 0.98291 0.86674 0.79424 0.84476 0.78310 1.20159 1.21804 1.20510 1.18811 0.93089 0.84566 1.43288 0.92288 1.43804 1.50331 1.04214 1.30318 1.19982 0.89882 1.03055 0.81658 1.21580 0.98346 0.91985 0.98187 1.20900 1.00529 0.96520 0.95310 1.19399 0.99073 0.95170 0.96171 1.19159 0.99243 0.93292 0.96702 1.21339 1.02256 0.96608 0.97979 1.18246 0.95463 0.85507 0.91846 1.84769 1.56686 1.27640 1.60719 1.20369 0.99420 0.96391 0.94909 1.21520 0.97272 0.95642 1.01051 1.21523 0.97055 1.00337 0.96602 1.20367 1.01265 0.94226 0.95213 1.21022 0.92457 0.88845 0.91113 1.22790 0.95872 1.01361 0.96761 1.22441 0.96544 0.99012 0.98162 1.22240 0.96671 1.00253 0.96279 1.22554 0.99173 0.99767 0.95535 0.93332 0.87169 0.95352 0.87095 0.86888 0.75109 0.91468 0.91389 0.91789 0.92045 0.91843 0.92034 0.91398 0.91390 0.93706 0.89652 0.93784 0.92986 0.92945 0.93582 0.92040 0.94008 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.98 11.40 55.49 0.63 -23.34 16 2 C 0.04 0.96 3.94 -17.43 -0.07 0.89 16 3 Si 0.88 20.35 28.08 -169.99 -4.77 15.58 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.27 -6.53 5.60 -15.06 -0.08 -6.62 16 8 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 9 N -0.57 -12.95 2.35 -165.75 -0.39 -13.34 16 10 C 0.18 4.13 5.09 -5.19 -0.03 4.11 16 11 C -0.10 -2.02 5.47 -104.57 -0.57 -2.59 16 12 C -0.11 -2.04 9.23 -39.46 -0.36 -2.41 16 13 C -0.10 -1.57 5.74 -104.57 -0.60 -2.17 16 14 C -0.08 -1.34 5.74 -104.62 -0.60 -1.94 16 15 C -0.16 -2.94 9.55 -39.30 -0.38 -3.32 16 16 C 0.13 2.81 6.66 -39.32 -0.26 2.54 16 17 O -0.49 -10.90 10.83 -19.44 -0.21 -11.11 16 18 C -0.07 -0.93 5.67 -28.05 -0.16 -1.08 16 19 C -0.12 -1.26 5.98 -26.70 -0.16 -1.42 16 20 C -0.12 -1.26 5.98 -26.71 -0.16 -1.42 16 21 C -0.07 -0.93 5.67 -28.05 -0.16 -1.09 16 22 C 0.17 3.50 3.42 -66.81 -0.23 3.28 16 23 C -0.13 -2.53 6.42 -25.03 -0.16 -2.69 16 24 C -0.12 -2.03 6.91 -24.70 -0.17 -2.20 16 25 C -0.12 -1.94 6.83 -25.07 -0.17 -2.11 16 26 C -0.13 -2.41 6.17 -25.61 -0.16 -2.57 16 27 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 28 H 0.11 2.92 5.41 -51.93 -0.28 2.64 16 29 H 0.03 0.63 7.75 -51.93 -0.40 0.22 16 30 H 0.11 1.85 7.99 -52.49 -0.42 1.43 16 31 H 0.11 1.87 8.05 -52.48 -0.42 1.45 16 32 H 0.39 8.46 6.13 45.56 0.28 8.74 16 33 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.89 7.84 -51.93 -0.41 0.48 16 42 H 0.08 1.96 7.11 -51.93 -0.37 1.59 16 43 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.07 1.40 6.86 -51.93 -0.36 1.04 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -26.54 370.40 -11.43 -37.98 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -7.80 Total: 11.46 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -4.48 Total: -22.81 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.24 Total: -36.68 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -0.21 Total: -11.11 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.77 Total: 15.58 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -26.54 -11.43 -37.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160274123.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.449 kcal (2) G-P(sol) polarization free energy of solvation -26.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds