Wall clock time and date at job start Tue Mar 31 2020 11:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00093 * 2 1 4 4 H 1.48507 * 109.47145 * 269.99831 * 3 2 1 5 5 H 1.48496 * 109.47223 * 29.99571 * 3 2 1 6 6 H 1.48500 * 109.47424 * 149.99935 * 3 2 1 7 7 C 1.38815 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00360 * 198.20941 * 7 2 1 9 9 N 1.36937 * 119.99701 * 18.21750 * 7 2 1 10 10 C 1.46501 * 120.00112 * 39.50395 * 9 7 2 11 11 C 1.50699 * 109.47274 * 90.00162 * 10 9 7 12 12 C 1.37880 * 120.14412 * 104.99822 * 11 10 9 13 13 C 1.38910 * 120.62404 * 179.97438 * 12 11 10 14 14 C 1.37754 * 119.77025 * 359.84726 * 13 12 11 15 15 C 1.38782 * 119.73633 * 0.30598 * 14 13 12 16 16 C 1.38468 * 120.50522 * 359.74946 * 15 14 13 17 17 O 1.35905 * 120.17642 * 180.02562 * 16 15 14 18 18 C 1.50647 * 122.55845 * 180.69384 * 14 13 12 19 19 C 1.52726 * 110.58611 * 342.18641 * 18 14 13 20 20 C 1.53323 * 108.38124 * 51.13567 * 19 18 14 21 21 C 1.50654 * 117.70170 * 179.78350 * 13 12 11 22 22 C 1.46503 * 120.00371 * 219.50569 * 9 7 2 23 23 C 1.54265 * 110.02946 * 59.85830 * 22 9 7 24 24 C 1.54968 * 104.16302 * 217.13998 * 23 22 9 25 25 C 1.54887 * 102.77352 * 37.88902 * 24 23 22 26 26 C 1.53879 * 110.02994 * 302.64815 * 22 9 7 27 27 H 0.97000 * 120.00058 * 354.94352 * 1 2 3 28 28 H 1.09003 * 109.47221 * 330.00548 * 10 9 7 29 29 H 1.09005 * 109.47362 * 210.00159 * 10 9 7 30 30 H 1.07998 * 119.68396 * 359.97438 * 12 11 10 31 31 H 1.08004 * 119.74985 * 179.76467 * 15 14 13 32 32 H 0.96700 * 113.99996 * 270.02125 * 17 16 15 33 33 H 1.09000 * 109.24342 * 221.90241 * 18 14 13 34 34 H 1.08994 * 109.25699 * 102.47549 * 18 14 13 35 35 H 1.09004 * 109.67909 * 291.41459 * 19 18 14 36 36 H 1.08998 * 109.68152 * 170.86066 * 19 18 14 37 37 H 1.08998 * 109.68098 * 49.82548 * 20 19 18 38 38 H 1.08999 * 109.68203 * 170.33693 * 20 19 18 39 39 H 1.09004 * 109.24682 * 41.97111 * 21 13 12 40 40 H 1.08998 * 109.21870 * 282.53423 * 21 13 12 41 41 H 1.08994 * 110.02360 * 181.25273 * 22 9 7 42 42 H 1.09004 * 110.49037 * 335.78785 * 23 22 9 43 43 H 1.09007 * 110.48498 * 98.42752 * 23 22 9 44 44 H 1.08995 * 110.71860 * 279.57568 * 24 23 22 45 45 H 1.08997 * 110.92277 * 156.29868 * 24 23 22 46 46 H 1.09003 * 110.48569 * 203.40560 * 25 24 23 47 47 H 1.09001 * 110.59901 * 80.82064 * 25 24 23 48 48 H 1.08999 * 110.02872 * 238.56378 * 26 22 9 49 49 H 1.09001 * 110.03371 * 359.97438 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0497 -1.2254 0.2928 9 7 1.3771 -2.3585 -0.3697 10 6 0.4303 -2.3496 -1.4877 11 6 1.1656 -2.6388 -2.7709 12 6 1.0534 -3.8759 -3.3695 13 6 1.7263 -4.1531 -4.5527 14 6 2.5110 -3.1831 -5.1367 15 6 2.6284 -1.9381 -4.5348 16 6 1.9587 -1.6619 -3.3548 17 8 2.0780 -0.4402 -2.7714 18 6 3.2556 -3.4105 -6.4264 19 6 3.3765 -4.9044 -6.7204 20 6 1.9818 -5.5324 -6.6150 21 6 1.5610 -5.5275 -5.1469 22 6 1.6463 -3.6046 0.3521 23 6 1.2742 -3.4439 1.8406 24 6 2.3644 -4.2483 2.5929 25 6 3.6410 -3.9488 1.7686 26 6 3.1505 -3.9258 0.3062 27 1 -0.4850 0.8368 0.0740 28 1 -0.0446 -1.3707 -1.5538 29 1 -0.3310 -3.1126 -1.3252 30 1 0.4366 -4.6364 -2.9141 31 1 3.2467 -1.1787 -4.9905 32 1 2.8081 -0.3752 -2.1406 33 1 4.2528 -2.9779 -6.3466 34 1 2.7185 -2.9261 -7.2417 35 1 4.0440 -5.3685 -5.9942 36 1 3.7697 -5.0498 -7.7265 37 1 1.2718 -4.9502 -7.2024 38 1 2.0116 -6.5570 -6.9855 39 1 0.5159 -5.8282 -5.0716 40 1 2.1790 -6.2344 -4.5935 41 1 1.0763 -4.4221 -0.0891 42 1 1.3068 -2.3938 2.1309 43 1 0.2871 -3.8638 2.0345 44 1 2.1363 -5.3140 2.5783 45 1 2.4735 -3.8922 3.6173 46 1 4.3804 -4.7370 1.9106 47 1 4.0585 -2.9810 2.0462 48 1 3.3103 -4.8997 -0.1565 49 1 3.6801 -3.1548 -0.2535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160274123.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:31 Heat of formation + Delta-G solvation = -37.325281 kcal Electronic energy + Delta-G solvation = -27917.407404 eV Core-core repulsion = 24422.013712 eV Total energy + Delta-G solvation = -3495.393693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.11824 -39.33450 -38.44161 -36.20521 -35.57566 -33.44416 -32.84788 -31.04171 -29.32983 -29.23242 -28.24199 -27.18314 -24.55909 -23.90505 -23.10957 -22.42157 -21.30302 -20.72672 -20.19669 -18.56662 -17.92321 -17.32111 -16.76399 -16.44141 -16.26997 -16.02224 -15.82371 -15.20854 -15.06310 -14.86283 -14.63171 -14.52463 -14.08883 -13.96405 -13.73302 -13.49405 -13.22106 -13.09584 -12.88356 -12.69213 -12.66668 -12.25623 -12.18828 -11.91328 -11.89026 -11.77255 -11.71430 -11.68276 -11.61082 -11.43824 -11.32380 -11.24202 -11.12725 -10.91270 -10.37723 -9.45558 -8.99240 -8.36734 -7.74805 -5.33919 0.50267 0.56948 1.45826 1.50433 1.55125 2.53009 2.79708 3.38601 3.63071 3.76991 3.86803 3.93847 4.01132 4.04077 4.11035 4.14203 4.31842 4.34777 4.39036 4.47809 4.63974 4.70333 4.72791 4.74658 4.79027 4.87097 4.96238 4.97740 4.99328 5.00869 5.06676 5.11019 5.19326 5.20887 5.22447 5.25055 5.27398 5.32761 5.38626 5.51851 5.55002 5.61361 5.65628 5.72441 5.74531 5.83117 5.88886 5.97855 6.17030 6.60541 7.07400 7.28075 7.97783 8.53386 9.24919 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012623 B = 0.005293 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.600582 B = 5289.105454 C = 6610.531620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.002 4.002 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.247 4.247 8 H 0.054 0.946 9 N -0.577 5.577 10 C 0.189 3.811 11 C -0.119 4.119 12 C -0.116 4.116 13 C -0.093 4.093 14 C -0.079 4.079 15 C -0.166 4.166 16 C 0.100 3.900 17 O -0.502 6.502 18 C -0.075 4.075 19 C -0.115 4.115 20 C -0.115 4.115 21 C -0.074 4.074 22 C 0.165 3.835 23 C -0.127 4.127 24 C -0.112 4.112 25 C -0.112 4.112 26 C -0.122 4.122 27 H 0.247 0.753 28 H 0.072 0.928 29 H 0.024 0.976 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.384 0.616 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.047 0.953 48 H 0.060 0.940 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.726 -12.757 -9.382 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.200 4.200 3 Si 0.759 3.241 4 H -0.205 1.205 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.377 4.377 8 H 0.071 0.929 9 N -0.297 5.297 10 C 0.062 3.938 11 C -0.122 4.122 12 C -0.135 4.135 13 C -0.093 4.093 14 C -0.080 4.080 15 C -0.184 4.184 16 C 0.055 3.945 17 O -0.314 6.314 18 C -0.112 4.112 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.111 4.111 22 C 0.059 3.941 23 C -0.167 4.167 24 C -0.150 4.150 25 C -0.150 4.150 26 C -0.162 4.162 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.243 0.757 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.120 -12.470 -9.757 16.975 hybrid contribution 0.282 1.697 0.835 1.912 sum 6.402 -10.773 -8.922 15.383 Atomic orbital electron populations 1.69938 1.06974 1.25619 1.53168 1.25593 0.95142 1.00205 0.99094 0.85905 0.78696 0.81689 0.77817 1.20481 1.23157 1.19387 1.18810 0.92604 0.85184 1.41071 0.92869 1.43924 1.49999 1.04707 1.31041 1.19660 0.90102 1.00727 0.83267 1.21344 0.99406 0.93539 0.97914 1.21062 1.00844 0.95543 0.96091 1.19843 0.97397 0.97016 0.95028 1.19645 0.98485 0.92114 0.97718 1.21526 1.01923 0.97959 0.97032 1.18544 0.97366 0.85255 0.93316 1.84765 1.56742 1.29055 1.60845 1.20476 0.99389 0.98393 0.92931 1.21538 0.97379 0.93772 1.02504 1.21543 0.96860 1.01935 0.94932 1.20467 1.02256 0.91761 0.96650 1.21221 0.94019 0.87772 0.91125 1.22687 0.97395 0.99577 0.97026 1.22389 0.94643 0.99785 0.98141 1.22215 0.97396 1.00683 0.94679 1.22425 0.97142 0.99780 0.96829 0.94368 0.91063 0.95729 0.86039 0.85741 0.75724 0.90558 0.90302 0.91938 0.89523 0.92012 0.89505 0.90497 0.90276 0.93277 0.93601 0.93822 0.90525 0.91800 0.90523 0.93431 0.92171 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.87 11.40 21.65 0.25 -52.62 16 2 C 0.00 -0.09 3.94 84.86 0.33 0.24 16 3 Si 0.93 43.80 28.08 68.60 1.93 45.72 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.25 -12.53 5.60 84.03 0.47 -12.06 16 8 H 0.05 2.74 7.06 -2.91 -0.02 2.72 16 9 N -0.58 -27.36 2.35 -678.30 -1.59 -28.95 16 10 C 0.19 9.09 5.09 85.63 0.44 9.53 16 11 C -0.12 -5.07 5.47 -19.83 -0.11 -5.17 16 12 C -0.12 -4.13 9.23 22.35 0.21 -3.92 16 13 C -0.09 -2.78 5.74 -19.83 -0.11 -2.90 16 14 C -0.08 -2.38 5.74 -19.87 -0.11 -2.50 16 15 C -0.17 -5.93 9.55 22.45 0.21 -5.71 16 16 C 0.10 4.29 6.66 22.44 0.15 4.44 16 17 O -0.50 -23.72 10.83 -92.48 -1.00 -24.72 16 18 C -0.08 -1.63 5.67 29.74 0.17 -1.46 16 19 C -0.11 -1.94 5.98 30.61 0.18 -1.76 16 20 C -0.12 -1.96 5.98 30.61 0.18 -1.77 16 21 C -0.07 -1.61 5.67 29.74 0.17 -1.44 16 22 C 0.17 6.72 3.42 45.72 0.16 6.88 16 23 C -0.13 -5.04 6.42 31.70 0.20 -4.83 16 24 C -0.11 -3.42 6.91 31.91 0.22 -3.20 16 25 C -0.11 -3.49 6.83 31.67 0.22 -3.27 16 26 C -0.12 -4.38 6.17 31.32 0.19 -4.19 16 27 H 0.25 14.19 8.32 -92.71 -0.77 13.42 16 28 H 0.07 4.05 5.41 -2.39 -0.01 4.04 16 29 H 0.02 1.14 7.75 -2.38 -0.02 1.13 16 30 H 0.12 3.95 7.99 -2.91 -0.02 3.93 16 31 H 0.12 4.05 8.05 -2.91 -0.02 4.03 16 32 H 0.38 17.67 6.13 -74.06 -0.45 17.22 16 33 H 0.08 1.54 8.12 -2.39 -0.02 1.53 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.55 8.12 -2.38 -0.02 1.53 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.05 1.93 7.84 -2.39 -0.02 1.91 16 42 H 0.05 2.17 7.11 -2.39 -0.02 2.15 16 43 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 47 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.04 1.81 6.86 -2.39 -0.02 1.79 16 Total: -1.00 -61.06 370.40 3.22 -57.84 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.47 Total: 35.82 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 3.17 Total: -33.10 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -1.34 Total: -81.57 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -1.00 Total: -24.72 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.93 Total: 45.72 kcal Total: -61.06 3.22 -57.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160274123.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.518 kcal (2) G-P(sol) polarization free energy of solvation -61.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds