Wall clock time and date at job start Tue Mar 31 2020 11:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 111.00509 * 2 1 4 4 C 1.50706 * 109.47020 * 293.95887 * 3 2 1 5 5 N 1.30520 * 126.33971 * 275.02166 * 4 3 2 6 6 N 1.28601 * 109.67051 * 179.97438 * 5 4 3 7 7 C 1.30523 * 109.66884 * 0.02562 * 6 5 4 8 8 N 1.35489 * 107.31147 * 359.77220 * 7 6 5 9 9 H 0.96995 * 126.98343 * 180.22691 * 8 7 6 10 10 C 1.46905 * 111.00057 * 123.95775 * 2 1 3 11 11 C 1.50695 * 109.47348 * 66.04233 * 10 2 1 12 12 C 1.38288 * 119.92192 * 269.72798 * 11 10 2 13 13 C 1.38103 * 120.07229 * 179.72282 * 12 11 10 14 14 C 1.38917 * 119.92237 * 0.55047 * 13 12 11 15 15 N 1.39677 * 120.07071 * 179.74730 * 14 13 12 16 16 C 1.46499 * 119.99719 * 179.97438 * 15 14 13 17 17 C 1.46497 * 120.00315 * 359.97434 * 15 14 13 18 18 C 1.50702 * 109.46824 * 90.00168 * 17 15 14 19 19 H 1.07998 * 120.00224 * 0.02562 * 18 17 15 20 20 C 1.37885 * 119.99818 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99843 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99856 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46861 * 60.00539 * 22 20 18 24 24 H 1.48500 * 109.46798 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47111 * 300.00089 * 22 20 18 26 26 C 1.38905 * 119.84979 * 359.72374 * 14 13 12 27 27 C 1.38097 * 119.92670 * 0.02562 * 26 14 13 28 28 H 1.08993 * 109.47040 * 59.99524 * 1 2 3 29 29 H 1.09001 * 109.47545 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47013 * 300.00163 * 1 2 3 31 31 H 1.09000 * 109.47401 * 173.95607 * 3 2 1 32 32 H 1.09002 * 109.46966 * 53.95348 * 3 2 1 33 33 H 1.08005 * 126.33964 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.46849 * 186.04498 * 10 2 1 35 35 H 1.09002 * 109.46598 * 306.04244 * 10 2 1 36 36 H 1.08001 * 119.96747 * 359.97438 * 12 11 10 37 37 H 1.07999 * 120.04178 * 180.27022 * 13 12 11 38 38 H 1.09002 * 109.47258 * 90.00213 * 16 15 14 39 39 H 1.09004 * 109.47375 * 209.99626 * 16 15 14 40 40 H 1.08998 * 109.47462 * 330.00146 * 16 15 14 41 41 H 1.08999 * 109.47486 * 209.99977 * 17 15 14 42 42 H 1.08997 * 109.47310 * 330.00269 * 17 15 14 43 43 H 0.97001 * 119.99784 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.03315 * 179.97438 * 26 14 13 45 45 H 1.08003 * 119.96258 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6369 2.0471 -1.2985 5 7 2.3036 1.9743 -2.4182 6 7 1.7117 2.6735 -3.3207 7 6 0.6408 3.2245 -2.8175 8 7 0.5602 2.8389 -1.5211 9 1 -0.1277 3.0817 -0.8818 10 6 1.9954 -0.7661 1.1376 11 6 1.6369 -2.2205 0.9728 12 6 0.4529 -2.7030 1.4998 13 6 0.1185 -4.0340 1.3457 14 6 0.9785 -4.8909 0.6704 15 7 0.6458 -6.2388 0.5173 16 6 1.5537 -7.1409 -0.1956 17 6 -0.6108 -6.7505 1.0697 18 6 -1.7014 -6.6244 0.0373 19 1 -1.4805 -6.2055 -0.9333 20 6 -2.9812 -7.0449 0.3316 21 7 -3.2501 -7.5556 1.5133 22 14 -4.3332 -6.8880 -0.9478 23 1 -3.9664 -7.6723 -2.1543 24 1 -5.6070 -7.4068 -0.3879 25 1 -4.5011 -5.4598 -1.3179 26 6 2.1696 -4.4040 0.1473 27 6 2.4954 -3.0708 0.3005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.0798 1.3443 0.1082 32 1 1.5612 1.9273 0.8309 33 1 -0.0546 3.8654 -3.3391 34 1 3.0797 -0.6612 1.1755 35 1 1.5611 -0.3873 2.0628 36 1 -0.2130 -2.0373 2.0289 37 1 -0.8084 -4.4094 1.7536 38 1 2.2561 -7.5827 0.5112 39 1 0.9772 -7.9310 -0.6768 40 1 2.1034 -6.5803 -0.9516 41 1 -0.4879 -7.7987 1.3421 42 1 -0.8800 -6.1742 1.9548 43 1 -4.1505 -7.8511 1.7205 44 1 2.8406 -5.0676 -0.3778 45 1 3.4216 -2.6917 -0.1056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179796078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:59 Heat of formation + Delta-G solvation = 123.422449 kcal Electronic energy + Delta-G solvation = -25461.898552 eV Core-core repulsion = 21902.227811 eV Total energy + Delta-G solvation = -3559.670740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.30627 -39.24778 -37.63117 -35.48110 -33.93025 -32.76643 -31.70467 -30.49851 -29.93624 -27.87910 -27.62633 -26.74597 -24.69860 -23.30897 -22.91774 -21.84040 -21.51315 -21.16817 -19.57939 -18.50454 -16.67637 -16.51464 -16.46652 -15.83520 -15.43455 -15.25677 -15.11572 -14.77816 -14.40890 -14.13511 -13.69811 -13.41081 -13.15143 -12.99468 -12.86911 -12.36397 -12.18443 -11.89386 -11.79895 -11.74399 -11.57133 -11.40114 -11.25420 -11.02970 -10.98381 -10.80123 -10.68402 -10.59496 -10.28770 -9.90925 -9.78303 -9.50801 -8.86857 -8.52739 -8.47195 -8.25937 -6.48210 -6.03731 -4.19691 1.52604 2.09468 2.19432 2.51498 2.70514 3.26112 3.30296 3.34054 3.88126 4.05080 4.14426 4.39295 4.52172 4.55412 4.64912 5.00659 5.06492 5.17248 5.19146 5.20680 5.32467 5.36943 5.50808 5.57515 5.61123 5.69523 5.82629 5.84755 5.95317 6.00642 6.07971 6.28313 6.36907 6.42239 6.63878 6.73454 6.81171 6.85528 6.95303 7.05527 7.18675 7.24849 7.33568 7.58775 7.78899 8.13516 8.25334 8.47549 8.54020 8.89455 9.47138 10.93282 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.013763 B = 0.002973 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.930501 B = 9416.885067 C =10491.117554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.528 5.528 3 C 0.139 3.861 4 C 0.192 3.808 5 N -0.274 5.274 6 N -0.298 5.298 7 C 0.150 3.850 8 N -0.584 5.584 9 H 0.427 0.573 10 C 0.114 3.886 11 C -0.171 4.171 12 C -0.067 4.067 13 C -0.189 4.189 14 C 0.243 3.757 15 N -0.615 5.615 16 C 0.098 3.902 17 C 0.249 3.751 18 C -0.532 4.532 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.222 4.222 27 C -0.048 4.048 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.024 0.976 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.220 0.780 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.036 0.964 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.030 0.970 42 H 0.036 0.964 43 H 0.264 0.736 44 H 0.114 0.886 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.806 18.870 0.515 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.252 5.252 3 C 0.009 3.991 4 C -0.077 4.077 5 N -0.116 5.116 6 N -0.138 5.138 7 C -0.139 4.139 8 N -0.197 5.197 9 H 0.266 0.734 10 C -0.012 4.012 11 C -0.175 4.175 12 C -0.086 4.086 13 C -0.212 4.212 14 C 0.136 3.864 15 N -0.321 5.321 16 C -0.046 4.046 17 C 0.130 3.870 18 C -0.571 4.571 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.245 4.245 27 C -0.067 4.067 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.042 0.958 31 H 0.129 0.871 32 H 0.070 0.930 33 H 0.236 0.764 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.124 0.876 37 H 0.148 0.852 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.132 0.868 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.944 17.878 -0.945 20.013 hybrid contribution -2.796 0.899 1.066 3.125 sum 6.148 18.777 0.122 19.759 Atomic orbital electron populations 1.22519 0.87178 1.04065 0.99215 1.61959 1.08199 1.10394 1.44692 1.20415 1.02367 0.88658 0.87690 1.24770 0.87321 0.96341 0.99301 1.74297 1.24385 1.16382 0.96502 1.74308 1.05833 1.09402 1.24258 1.26494 1.00838 1.03744 0.82797 1.44215 1.23225 1.39316 1.12981 0.73383 1.20845 0.99649 0.90919 0.89793 1.19034 0.97513 0.93735 1.07171 1.20634 0.95201 0.94745 0.98049 1.20836 1.01524 0.93196 1.05613 1.17967 0.92128 0.84737 0.91573 1.47114 1.22168 1.04855 1.57920 1.21483 0.93436 0.94069 0.95654 1.19275 0.78912 0.94656 0.94204 1.21556 0.93691 1.41424 1.00408 0.92294 1.24958 0.98564 0.94961 0.95543 1.69922 1.21207 1.41657 1.20664 0.86584 0.80868 0.78598 0.81585 1.20177 1.21176 1.20155 1.20582 0.98521 0.96360 1.09076 1.20504 0.98090 0.92360 0.95756 0.92625 0.89347 0.95774 0.87149 0.93038 0.76361 0.90245 0.94447 0.87557 0.85156 0.94568 0.91460 0.92588 0.95196 0.94658 0.92591 0.86835 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.03 60.06 0.54 0.75 16 2 N -0.53 -6.02 4.74 -245.82 -1.17 -7.19 16 3 C 0.14 1.23 5.59 -4.98 -0.03 1.20 16 4 C 0.19 2.03 6.79 -154.99 -1.05 0.98 16 5 N -0.27 -3.93 12.21 32.80 0.40 -3.53 16 6 N -0.30 -3.98 12.21 29.69 0.36 -3.62 16 7 C 0.15 1.26 13.19 -89.95 -1.19 0.07 16 8 N -0.58 -4.26 5.77 -11.36 -0.07 -4.33 16 9 H 0.43 1.54 8.96 -40.82 -0.37 1.18 16 10 C 0.11 1.28 5.12 -4.98 -0.03 1.26 16 11 C -0.17 -2.53 4.88 -104.59 -0.51 -3.04 16 12 C -0.07 -1.08 7.90 -39.61 -0.31 -1.40 16 13 C -0.19 -3.73 9.21 -39.38 -0.36 -4.09 16 14 C 0.24 4.88 6.55 -83.79 -0.55 4.33 16 15 N -0.62 -13.15 2.99 -181.00 -0.54 -13.69 16 16 C 0.10 1.73 10.19 59.85 0.61 2.34 16 17 C 0.25 6.22 4.91 -5.19 -0.03 6.19 16 18 C -0.53 -14.47 9.39 -34.44 -0.32 -14.80 16 19 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.90 -25.49 13.29 55.43 0.74 -24.75 16 22 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C -0.22 -3.88 9.21 -39.39 -0.36 -4.24 16 27 C -0.05 -0.74 9.69 -39.62 -0.38 -1.13 16 28 H 0.05 0.61 6.94 -51.93 -0.36 0.25 16 29 H 0.09 1.22 5.90 -51.93 -0.31 0.91 16 30 H 0.02 0.22 8.14 -51.92 -0.42 -0.21 16 31 H 0.11 0.91 7.93 -51.93 -0.41 0.50 16 32 H 0.05 0.32 8.12 -51.93 -0.42 -0.10 16 33 H 0.22 0.79 8.06 -52.48 -0.42 0.37 16 34 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 35 H 0.04 0.38 8.06 -51.93 -0.42 -0.04 16 36 H 0.11 1.50 8.00 -52.49 -0.42 1.08 16 37 H 0.13 2.85 6.14 -52.49 -0.32 2.52 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 1.21 8.07 -51.93 -0.42 0.80 16 40 H 0.06 0.89 6.20 -51.93 -0.32 0.56 16 41 H 0.03 0.78 8.07 -51.93 -0.42 0.37 16 42 H 0.04 0.93 6.20 -51.93 -0.32 0.60 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.11 1.81 6.14 -52.49 -0.32 1.49 16 45 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -33.55 370.32 -10.26 -43.81 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.48 Total: 1.46 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -4.07 Total: -9.97 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.27 Total: -57.10 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.55 -10.26 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179796078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.233 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds