Wall clock time and date at job start Tue Mar 31 2020 11:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 111.00509 * 2 1 4 4 C 1.50706 * 109.47020 * 293.95887 * 3 2 1 5 5 N 1.30520 * 126.33971 * 275.02166 * 4 3 2 6 6 N 1.28601 * 109.67051 * 179.97438 * 5 4 3 7 7 C 1.30523 * 109.66884 * 0.02562 * 6 5 4 8 8 N 1.35489 * 107.31147 * 359.77220 * 7 6 5 9 9 H 0.96995 * 126.98343 * 180.22691 * 8 7 6 10 10 C 1.46905 * 111.00057 * 123.95775 * 2 1 3 11 11 C 1.50695 * 109.47348 * 66.04233 * 10 2 1 12 12 C 1.38288 * 119.92192 * 269.72798 * 11 10 2 13 13 C 1.38103 * 120.07229 * 179.72282 * 12 11 10 14 14 C 1.38917 * 119.92237 * 0.55047 * 13 12 11 15 15 N 1.39677 * 120.07071 * 179.74730 * 14 13 12 16 16 C 1.46499 * 119.99719 * 179.97438 * 15 14 13 17 17 C 1.46497 * 120.00315 * 359.97434 * 15 14 13 18 18 C 1.50702 * 109.46824 * 90.00168 * 17 15 14 19 19 H 1.07998 * 120.00224 * 0.02562 * 18 17 15 20 20 C 1.37885 * 119.99818 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99843 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99856 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46861 * 60.00539 * 22 20 18 24 24 H 1.48500 * 109.46798 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47111 * 300.00089 * 22 20 18 26 26 C 1.38905 * 119.84979 * 359.72374 * 14 13 12 27 27 C 1.38097 * 119.92670 * 0.02562 * 26 14 13 28 28 H 1.08993 * 109.47040 * 59.99524 * 1 2 3 29 29 H 1.09001 * 109.47545 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47013 * 300.00163 * 1 2 3 31 31 H 1.09000 * 109.47401 * 173.95607 * 3 2 1 32 32 H 1.09002 * 109.46966 * 53.95348 * 3 2 1 33 33 H 1.08005 * 126.33964 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.46849 * 186.04498 * 10 2 1 35 35 H 1.09002 * 109.46598 * 306.04244 * 10 2 1 36 36 H 1.08001 * 119.96747 * 359.97438 * 12 11 10 37 37 H 1.07999 * 120.04178 * 180.27022 * 13 12 11 38 38 H 1.09002 * 109.47258 * 90.00213 * 16 15 14 39 39 H 1.09004 * 109.47375 * 209.99626 * 16 15 14 40 40 H 1.08998 * 109.47462 * 330.00146 * 16 15 14 41 41 H 1.08999 * 109.47486 * 209.99977 * 17 15 14 42 42 H 1.08997 * 109.47310 * 330.00269 * 17 15 14 43 43 H 0.97001 * 119.99784 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.03315 * 179.97438 * 26 14 13 45 45 H 1.08003 * 119.96258 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6369 2.0471 -1.2985 5 7 2.3036 1.9743 -2.4182 6 7 1.7117 2.6735 -3.3207 7 6 0.6408 3.2245 -2.8175 8 7 0.5602 2.8389 -1.5211 9 1 -0.1277 3.0817 -0.8818 10 6 1.9954 -0.7661 1.1376 11 6 1.6369 -2.2205 0.9728 12 6 0.4529 -2.7030 1.4998 13 6 0.1185 -4.0340 1.3457 14 6 0.9785 -4.8909 0.6704 15 7 0.6458 -6.2388 0.5173 16 6 1.5537 -7.1409 -0.1956 17 6 -0.6108 -6.7505 1.0697 18 6 -1.7014 -6.6244 0.0373 19 1 -1.4805 -6.2055 -0.9333 20 6 -2.9812 -7.0449 0.3316 21 7 -3.2501 -7.5556 1.5133 22 14 -4.3332 -6.8880 -0.9478 23 1 -3.9664 -7.6723 -2.1543 24 1 -5.6070 -7.4068 -0.3879 25 1 -4.5011 -5.4598 -1.3179 26 6 2.1696 -4.4040 0.1473 27 6 2.4954 -3.0708 0.3005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.0798 1.3443 0.1082 32 1 1.5612 1.9273 0.8309 33 1 -0.0546 3.8654 -3.3391 34 1 3.0797 -0.6612 1.1755 35 1 1.5611 -0.3873 2.0628 36 1 -0.2130 -2.0373 2.0289 37 1 -0.8084 -4.4094 1.7536 38 1 2.2561 -7.5827 0.5112 39 1 0.9772 -7.9310 -0.6768 40 1 2.1034 -6.5803 -0.9516 41 1 -0.4879 -7.7987 1.3421 42 1 -0.8800 -6.1742 1.9548 43 1 -4.1505 -7.8511 1.7205 44 1 2.8406 -5.0676 -0.3778 45 1 3.4216 -2.6917 -0.1056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179796078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:58 Heat of formation + Delta-G solvation = 102.318282 kcal Electronic energy + Delta-G solvation = -25462.813697 eV Core-core repulsion = 21902.227811 eV Total energy + Delta-G solvation = -3560.585886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.02879 -40.54962 -38.68667 -36.89617 -34.81606 -34.60820 -32.62756 -31.89244 -31.12011 -29.62132 -28.49953 -27.86799 -26.27235 -24.67249 -23.68584 -22.98402 -22.95480 -21.93143 -20.96159 -19.16335 -18.64238 -18.07979 -17.28733 -16.94566 -16.53700 -16.47085 -16.07354 -15.87749 -15.62083 -15.41215 -15.26638 -14.62770 -14.41855 -14.29020 -14.06315 -13.90049 -13.30351 -13.17780 -13.12621 -12.90829 -12.76985 -12.67535 -12.55096 -12.54514 -12.49344 -12.18495 -11.94757 -11.76531 -11.73824 -11.38384 -11.34919 -10.65269 -10.44147 -10.26060 -9.63108 -9.25670 -8.36828 -7.79486 -6.38538 0.72386 0.77561 0.97191 1.35855 1.37105 1.45820 1.89682 1.97107 2.33143 2.64038 2.95428 3.04842 3.38196 3.39976 3.97069 4.04408 4.09109 4.12266 4.26865 4.36414 4.37893 4.44052 4.50630 4.56518 4.60887 4.65046 4.71869 4.76334 4.84988 4.88237 4.93553 5.01839 5.05618 5.14946 5.15638 5.20249 5.35201 5.59219 5.68832 5.70716 5.89316 6.04546 6.06591 6.09992 6.24982 6.31811 6.50283 6.82175 6.94471 7.33320 7.79229 8.81973 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.013763 B = 0.002973 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.930501 B = 9416.885067 C =10491.117554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.548 5.548 3 C 0.142 3.858 4 C 0.191 3.809 5 N -0.328 5.328 6 N -0.356 5.356 7 C 0.170 3.830 8 N -0.570 5.570 9 H 0.446 0.554 10 C 0.118 3.882 11 C -0.156 4.156 12 C -0.062 4.062 13 C -0.218 4.218 14 C 0.212 3.788 15 N -0.633 5.633 16 C 0.098 3.902 17 C 0.268 3.732 18 C -0.543 4.543 19 H 0.047 0.953 20 C 0.015 3.985 21 N -0.926 5.926 22 Si 0.960 3.040 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.273 1.273 26 C -0.222 4.222 27 C -0.050 4.050 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.263 0.737 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.008 0.992 42 H 0.013 0.987 43 H 0.268 0.732 44 H 0.128 0.872 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 21.772 0.273 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.273 5.273 3 C 0.013 3.987 4 C -0.080 4.080 5 N -0.169 5.169 6 N -0.195 5.195 7 C -0.120 4.120 8 N -0.185 5.185 9 H 0.289 0.711 10 C -0.008 4.008 11 C -0.158 4.158 12 C -0.081 4.081 13 C -0.241 4.241 14 C 0.107 3.893 15 N -0.341 5.341 16 C -0.045 4.045 17 C 0.146 3.854 18 C -0.582 4.582 19 H 0.065 0.935 20 C -0.185 4.185 21 N -0.565 5.565 22 Si 0.784 3.216 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.199 1.199 26 C -0.244 4.244 27 C -0.069 4.069 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.135 0.865 32 H 0.104 0.896 33 H 0.279 0.721 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.144 0.856 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.026 0.974 42 H 0.030 0.970 43 H 0.077 0.923 44 H 0.146 0.854 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.307 20.813 -1.180 22.830 hybrid contribution -2.868 0.168 1.163 3.100 sum 6.439 20.981 -0.018 21.947 Atomic orbital electron populations 1.22422 0.87354 1.02366 1.00422 1.61796 1.08238 1.12270 1.45004 1.20512 1.02935 0.87427 0.87852 1.25001 0.87650 0.96368 0.99006 1.74176 1.26503 1.18200 0.98014 1.74194 1.08260 1.11517 1.25554 1.27289 0.99664 1.02086 0.82946 1.44146 1.22883 1.38319 1.13105 0.71132 1.20854 1.01064 0.88244 0.90673 1.19468 0.95955 0.95934 1.04485 1.20827 0.96153 0.93392 0.97765 1.20768 1.00833 0.95101 1.07372 1.18234 0.93577 0.84215 0.93225 1.46971 1.21679 1.06080 1.59386 1.21586 0.93047 0.93601 0.96249 1.18754 0.80521 0.92951 0.93157 1.21749 0.94851 1.41313 1.00269 0.93509 1.25755 1.00759 0.94508 0.97463 1.70026 1.21858 1.42347 1.22291 0.85587 0.78198 0.78596 0.79179 1.19542 1.20170 1.19879 1.20800 0.97538 0.97565 1.08543 1.20895 0.99158 0.91624 0.95206 0.92771 0.92463 0.93175 0.86538 0.89574 0.72096 0.88246 0.92413 0.85605 0.88705 0.92849 0.92623 0.90588 0.97352 0.96956 0.92328 0.85415 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.03 127.69 1.15 1.59 16 2 N -0.55 -10.69 4.74 -931.65 -4.42 -15.11 16 3 C 0.14 1.99 5.59 85.56 0.48 2.47 16 4 C 0.19 3.56 6.79 137.98 0.94 4.50 16 5 N -0.33 -9.07 12.21 -50.15 -0.61 -9.68 16 6 N -0.36 -9.16 12.21 -59.99 -0.73 -9.89 16 7 C 0.17 2.41 13.19 180.11 2.37 4.79 16 8 N -0.57 -6.52 5.77 -189.85 -1.10 -7.61 16 9 H 0.45 1.46 8.96 -92.71 -0.83 0.62 16 10 C 0.12 2.19 5.12 85.55 0.44 2.63 16 11 C -0.16 -4.23 4.88 -19.84 -0.10 -4.33 16 12 C -0.06 -1.98 7.90 22.25 0.18 -1.81 16 13 C -0.22 -8.97 9.21 22.40 0.21 -8.76 16 14 C 0.21 8.75 6.55 38.21 0.25 9.00 16 15 N -0.63 -28.25 2.99 -726.56 -2.17 -30.42 16 16 C 0.10 3.53 10.19 127.77 1.30 4.83 16 17 C 0.27 14.20 4.91 85.63 0.42 14.62 16 18 C -0.54 -30.83 9.39 25.60 0.24 -30.59 16 19 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 20 C 0.01 0.82 5.46 84.66 0.46 1.28 16 21 N -0.93 -54.31 13.29 21.45 0.28 -54.02 16 22 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 26 C -0.22 -7.55 9.21 22.40 0.21 -7.34 16 27 C -0.05 -1.44 9.69 22.25 0.22 -1.22 16 28 H 0.05 1.06 6.94 -2.39 -0.02 1.04 16 29 H 0.06 1.49 5.90 -2.39 -0.01 1.48 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.12 1.51 7.93 -2.39 -0.02 1.49 16 32 H 0.09 0.64 8.12 -2.39 -0.02 0.62 16 33 H 0.26 0.88 8.06 -2.91 -0.02 0.86 16 34 H 0.10 1.51 7.87 -2.39 -0.02 1.49 16 35 H 0.06 0.88 8.06 -2.39 -0.02 0.86 16 36 H 0.13 3.41 8.00 -2.91 -0.02 3.39 16 37 H 0.09 4.51 6.14 -2.91 -0.02 4.49 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 2.08 8.07 -2.38 -0.02 2.06 16 40 H 0.08 2.37 6.20 -2.39 -0.01 2.36 16 41 H 0.01 0.47 8.07 -2.39 -0.02 0.45 16 42 H 0.01 0.71 6.20 -2.39 -0.01 0.69 16 43 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.13 3.88 6.14 -2.91 -0.02 3.87 16 45 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -77.64 370.32 2.22 -75.42 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.18 Total: 13.40 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 8.76 Total: -8.34 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -8.75 Total: -126.73 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -77.64 2.22 -75.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179796078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.743 kcal (2) G-P(sol) polarization free energy of solvation -77.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds