Wall clock time and date at job start Tue Mar 31 2020 12:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99714 * 2 1 4 4 H 1.48501 * 109.47186 * 269.99793 * 3 2 1 5 5 H 1.48507 * 109.47145 * 29.99960 * 3 2 1 6 6 H 1.48495 * 109.47112 * 149.99639 * 3 2 1 7 7 C 1.37869 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00100 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00325 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47387 * 179.97438 * 9 7 2 11 11 O 1.42896 * 109.46955 * 179.97438 * 10 9 7 12 12 C 1.35899 * 116.99808 * 180.02562 * 11 10 9 13 13 C 1.38814 * 120.02135 * 0.02562 * 12 11 10 14 14 C 1.38171 * 120.09800 * 179.97438 * 13 12 11 15 15 C 1.38156 * 120.12380 * 0.02562 * 14 13 12 16 16 C 1.38926 * 120.04069 * 0.02562 * 15 14 13 17 17 N 1.39666 * 120.05216 * 179.97438 * 16 15 14 18 18 C 1.46506 * 119.99541 * 0.02562 * 17 16 15 19 19 H 1.08999 * 112.87355 * 28.12731 * 18 17 16 20 20 C 1.53924 * 113.64785 * 159.43425 * 18 17 16 21 21 C 1.53921 * 87.22124 * 139.35597 * 20 18 17 22 22 C 1.53010 * 113.65255 * 256.69414 * 18 17 16 23 23 C 1.53564 * 115.13814 * 103.66419 * 22 18 17 24 24 C 1.55059 * 103.98793 * 206.85357 * 23 22 18 25 25 C 1.54949 * 102.85577 * 37.30671 * 24 23 22 26 26 C 1.53178 * 115.37279 * 337.65529 * 22 18 17 27 27 C 1.38584 * 120.01895 * 180.25933 * 12 11 10 28 28 H 0.97004 * 120.00389 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46759 * 59.99724 * 9 7 2 30 30 H 1.08998 * 109.47162 * 300.00399 * 9 7 2 31 31 H 1.09003 * 109.46623 * 60.00210 * 10 9 7 32 32 H 1.08998 * 109.47566 * 300.00483 * 10 9 7 33 33 H 1.08003 * 119.94944 * 359.97438 * 13 12 11 34 34 H 1.07997 * 119.93653 * 180.02562 * 14 13 12 35 35 H 1.08002 * 119.97892 * 180.02562 * 15 14 13 36 36 H 0.96996 * 120.00383 * 180.27886 * 17 16 15 37 37 H 1.09001 * 113.59066 * 253.94018 * 20 18 17 38 38 H 1.09000 * 113.59588 * 24.68878 * 20 18 17 39 39 H 1.08997 * 113.64699 * 89.62384 * 21 20 18 40 40 H 1.09002 * 113.64900 * 220.55891 * 21 20 18 41 41 H 1.08996 * 110.52717 * 325.48732 * 23 22 18 42 42 H 1.09009 * 110.52308 * 88.23072 * 23 22 18 43 43 H 1.09007 * 110.73681 * 278.96759 * 24 23 22 44 44 H 1.09001 * 110.89174 * 155.72324 * 24 23 22 45 45 H 1.09003 * 110.48140 * 203.76324 * 25 24 23 46 46 H 1.09001 * 110.47998 * 81.14287 * 25 24 23 47 47 H 1.09000 * 110.08834 * 248.87573 * 26 22 18 48 48 H 1.08998 * 110.09238 * 10.47228 * 26 22 18 49 49 H 1.08000 * 120.06212 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0023 11 8 5.4506 -2.6363 0.0022 12 6 6.0676 -3.8472 0.0027 13 6 5.3120 -5.0117 0.0026 14 6 5.9377 -6.2436 0.0025 15 6 7.3171 -6.3207 0.0030 16 6 8.0786 -5.1587 0.0042 17 7 9.4731 -5.2364 0.0052 18 6 10.1339 -6.5439 0.0045 19 1 9.5349 -7.3211 -0.4701 20 6 11.5910 -6.4992 -0.4895 21 6 11.9243 -7.4950 0.6358 22 6 10.6975 -6.9476 1.3686 23 6 9.8730 -7.9949 2.1311 24 6 10.1981 -7.7155 3.6213 25 6 10.2951 -6.1697 3.6689 26 6 10.9727 -5.7903 2.3336 27 6 7.4515 -3.9201 0.0081 28 1 -0.4851 0.8400 -0.0004 29 1 3.8745 -0.6798 0.8912 30 1 3.8752 -0.6803 -0.8888 31 1 3.6586 -3.1508 -0.8876 32 1 3.6579 -3.1498 0.8924 33 1 4.2335 -4.9546 0.0026 34 1 5.3473 -7.1479 0.0020 35 1 7.8038 -7.2849 0.0025 36 1 10.0041 -4.4247 0.0101 37 1 11.7252 -6.9105 -1.4900 38 1 12.0639 -5.5249 -0.3659 39 1 11.8264 -8.5391 0.3388 40 1 12.8671 -7.2846 1.1408 41 1 8.8089 -7.8570 1.9396 42 1 10.1847 -9.0022 1.8543 43 1 11.1483 -8.1706 3.9009 44 1 9.3960 -8.0720 4.2676 45 1 10.9089 -5.8519 4.5118 46 1 9.3011 -5.7270 3.7316 47 1 12.0464 -5.6713 2.4791 48 1 10.5424 -4.8677 1.9442 49 1 8.0410 -3.0152 0.0124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189196258.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:40 Heat of formation + Delta-G solvation = -8.469396 kcal Electronic energy + Delta-G solvation = -25899.955240 eV Core-core repulsion = 22405.812833 eV Total energy + Delta-G solvation = -3494.142408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.94891 -39.57467 -37.45731 -35.56704 -33.77817 -33.24918 -31.06584 -29.68017 -29.17742 -28.33214 -27.13107 -25.49668 -24.61758 -22.75402 -21.98502 -21.40620 -20.90643 -20.24062 -18.50809 -18.05969 -16.75204 -16.56000 -16.11131 -15.70702 -15.51062 -15.35420 -15.16057 -14.88059 -14.15856 -14.06071 -13.62094 -13.39573 -13.38220 -13.15119 -12.87113 -12.81959 -12.44816 -12.12619 -11.96689 -11.70617 -11.46462 -11.35911 -11.32547 -11.24516 -11.02208 -10.89420 -10.71972 -10.68070 -10.66233 -10.34181 -10.13678 -9.98651 -9.81264 -9.65986 -9.31605 -8.60519 -7.98724 -7.31279 -6.11571 -4.12170 1.70449 1.85210 3.23496 3.29946 3.37040 3.42869 3.96504 4.03585 4.08476 4.20697 4.24223 4.40845 4.42659 4.63791 4.77944 4.95583 5.07473 5.13276 5.19611 5.22607 5.28331 5.32368 5.38086 5.42934 5.47770 5.52931 5.53560 5.56775 5.59268 5.68559 5.76126 5.79014 5.87227 5.92795 5.98666 6.01410 6.01537 6.07087 6.12541 6.14449 6.40515 6.48250 6.62013 6.75912 6.85853 7.10559 7.26583 7.40492 7.63639 7.68442 8.02110 8.41233 8.89529 9.48896 11.00983 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.023734 B = 0.002339 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.471611 B =11967.611888 C =12014.743414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.525 4.525 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.074 3.926 11 O -0.321 6.321 12 C 0.187 3.813 13 C -0.263 4.263 14 C -0.037 4.037 15 C -0.242 4.242 16 C 0.249 3.751 17 N -0.732 5.732 18 C 0.144 3.856 19 H 0.105 0.895 20 C -0.147 4.147 21 C -0.128 4.128 22 C -0.098 4.098 23 C -0.112 4.112 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.099 4.099 27 C -0.239 4.239 28 H 0.265 0.735 29 H 0.027 0.973 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.398 0.602 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.042 -17.573 2.772 31.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.563 4.563 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.000 4.000 11 O -0.234 6.234 12 C 0.139 3.861 13 C -0.284 4.284 14 C -0.056 4.056 15 C -0.264 4.264 16 C 0.147 3.853 17 N -0.361 5.361 18 C 0.037 3.963 19 H 0.123 0.877 20 C -0.185 4.185 21 C -0.166 4.166 22 C -0.100 4.100 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.137 4.137 27 C -0.262 4.262 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.145 0.855 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.233 0.767 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 25.986 -17.418 2.756 31.405 hybrid contribution 0.292 1.039 -0.010 1.080 sum 26.279 -16.378 2.746 31.086 Atomic orbital electron populations 1.69894 1.06264 1.27174 1.50318 1.24933 0.94759 0.99193 0.94160 0.86759 0.80467 0.83305 0.78744 1.20081 1.21204 1.18750 1.20850 0.88373 0.94926 1.52178 0.90730 1.19588 0.96886 0.90384 0.97814 1.23053 0.74666 1.01714 1.00579 1.86091 1.23995 1.26290 1.87007 1.18776 0.91497 0.84931 0.90915 1.21152 1.00431 0.92224 1.14571 1.20627 0.93728 0.96768 0.94431 1.20415 0.93709 0.96368 1.15906 1.17355 0.83290 0.92850 0.91833 1.44573 1.02554 1.07034 1.81930 1.22353 0.92066 0.86413 0.95464 0.87738 1.23310 0.95854 1.00287 0.99073 1.22824 0.97905 0.98865 0.97024 1.22562 0.96000 0.96279 0.95121 1.22303 1.00181 0.97693 0.94776 1.22484 1.01063 0.96001 0.96496 1.22368 1.00890 0.95857 0.96960 1.21816 0.99924 0.97733 0.94215 1.19652 0.92052 0.96396 1.18120 0.92479 0.95476 0.95899 0.92516 0.92483 0.85535 0.86375 0.86643 0.76681 0.90935 0.89826 0.89914 0.91017 0.90977 0.91815 0.91890 0.91828 0.92051 0.91508 0.92086 0.90998 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.53 -14.97 9.66 -34.44 -0.33 -15.31 16 8 H 0.07 2.24 7.99 -52.48 -0.42 1.83 16 9 C -0.01 -0.23 4.41 -27.88 -0.12 -0.35 16 10 C 0.07 1.57 4.68 37.16 0.17 1.74 16 11 O -0.32 -6.49 10.13 -19.42 -0.20 -6.69 16 12 C 0.19 3.27 6.68 -39.24 -0.26 3.00 16 13 C -0.26 -4.23 9.04 -39.39 -0.36 -4.58 16 14 C -0.04 -0.49 10.03 -39.64 -0.40 -0.89 16 15 C -0.24 -2.99 9.22 -39.36 -0.36 -3.35 16 16 C 0.25 3.15 6.65 -83.81 -0.56 2.59 16 17 N -0.73 -6.95 4.24 -51.71 -0.22 -7.17 16 18 C 0.14 1.11 3.46 -67.44 -0.23 0.88 16 19 H 0.10 0.84 6.33 -51.93 -0.33 0.51 16 20 C -0.15 -0.90 7.67 -25.77 -0.20 -1.10 16 21 C -0.13 -0.75 7.28 -26.24 -0.19 -0.94 16 22 C -0.10 -0.70 1.11 -154.11 -0.17 -0.87 16 23 C -0.11 -0.84 6.20 -25.35 -0.16 -1.00 16 24 C -0.12 -0.92 6.91 -24.61 -0.17 -1.09 16 25 C -0.12 -1.02 6.84 -24.93 -0.17 -1.19 16 26 C -0.10 -0.77 6.05 -25.87 -0.16 -0.93 16 27 C -0.24 -3.61 9.83 -39.23 -0.39 -3.99 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 30 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 31 H 0.06 1.16 7.66 -51.93 -0.40 0.77 16 32 H 0.06 1.17 7.66 -51.93 -0.40 0.77 16 33 H 0.13 2.04 6.29 -52.48 -0.33 1.71 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.12 1.19 5.59 -52.49 -0.29 0.90 16 36 H 0.40 3.39 8.11 -40.82 -0.33 3.06 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 39 H 0.08 0.43 7.94 -51.93 -0.41 0.02 16 40 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 41 H 0.07 0.63 7.54 -51.93 -0.39 0.24 16 42 H 0.06 0.42 7.81 -51.92 -0.41 0.01 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.43 7.74 -51.93 -0.40 0.03 16 48 H 0.07 0.62 6.22 -51.93 -0.32 0.30 16 49 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -30.60 380.49 -10.88 -41.48 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.15 Total: 1.64 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -4.15 Total: -25.39 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.55 Total: -33.89 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.20 Total: -6.69 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.60 -10.88 -41.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189196258.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.009 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds