Wall clock time and date at job start Tue Mar 31 2020 12:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99714 * 2 1 4 4 H 1.48501 * 109.47186 * 269.99793 * 3 2 1 5 5 H 1.48507 * 109.47145 * 29.99960 * 3 2 1 6 6 H 1.48495 * 109.47112 * 149.99639 * 3 2 1 7 7 C 1.37869 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00100 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00325 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47387 * 179.97438 * 9 7 2 11 11 O 1.42896 * 109.46955 * 179.97438 * 10 9 7 12 12 C 1.35899 * 116.99808 * 180.02562 * 11 10 9 13 13 C 1.38814 * 120.02135 * 0.02562 * 12 11 10 14 14 C 1.38171 * 120.09800 * 179.97438 * 13 12 11 15 15 C 1.38156 * 120.12380 * 0.02562 * 14 13 12 16 16 C 1.38926 * 120.04069 * 0.02562 * 15 14 13 17 17 N 1.39666 * 120.05216 * 179.97438 * 16 15 14 18 18 C 1.46506 * 119.99541 * 0.02562 * 17 16 15 19 19 H 1.08999 * 112.87355 * 28.12731 * 18 17 16 20 20 C 1.53924 * 113.64785 * 159.43425 * 18 17 16 21 21 C 1.53921 * 87.22124 * 139.35597 * 20 18 17 22 22 C 1.53010 * 113.65255 * 256.69414 * 18 17 16 23 23 C 1.53564 * 115.13814 * 103.66419 * 22 18 17 24 24 C 1.55059 * 103.98793 * 206.85357 * 23 22 18 25 25 C 1.54949 * 102.85577 * 37.30671 * 24 23 22 26 26 C 1.53178 * 115.37279 * 337.65529 * 22 18 17 27 27 C 1.38584 * 120.01895 * 180.25933 * 12 11 10 28 28 H 0.97004 * 120.00389 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46759 * 59.99724 * 9 7 2 30 30 H 1.08998 * 109.47162 * 300.00399 * 9 7 2 31 31 H 1.09003 * 109.46623 * 60.00210 * 10 9 7 32 32 H 1.08998 * 109.47566 * 300.00483 * 10 9 7 33 33 H 1.08003 * 119.94944 * 359.97438 * 13 12 11 34 34 H 1.07997 * 119.93653 * 180.02562 * 14 13 12 35 35 H 1.08002 * 119.97892 * 180.02562 * 15 14 13 36 36 H 0.96996 * 120.00383 * 180.27886 * 17 16 15 37 37 H 1.09001 * 113.59066 * 253.94018 * 20 18 17 38 38 H 1.09000 * 113.59588 * 24.68878 * 20 18 17 39 39 H 1.08997 * 113.64699 * 89.62384 * 21 20 18 40 40 H 1.09002 * 113.64900 * 220.55891 * 21 20 18 41 41 H 1.08996 * 110.52717 * 325.48732 * 23 22 18 42 42 H 1.09009 * 110.52308 * 88.23072 * 23 22 18 43 43 H 1.09007 * 110.73681 * 278.96759 * 24 23 22 44 44 H 1.09001 * 110.89174 * 155.72324 * 24 23 22 45 45 H 1.09003 * 110.48140 * 203.76324 * 25 24 23 46 46 H 1.09001 * 110.47998 * 81.14287 * 25 24 23 47 47 H 1.09000 * 110.08834 * 248.87573 * 26 22 18 48 48 H 1.08998 * 110.09238 * 10.47228 * 26 22 18 49 49 H 1.08000 * 120.06212 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0023 11 8 5.4506 -2.6363 0.0022 12 6 6.0676 -3.8472 0.0027 13 6 5.3120 -5.0117 0.0026 14 6 5.9377 -6.2436 0.0025 15 6 7.3171 -6.3207 0.0030 16 6 8.0786 -5.1587 0.0042 17 7 9.4731 -5.2364 0.0052 18 6 10.1339 -6.5439 0.0045 19 1 9.5349 -7.3211 -0.4701 20 6 11.5910 -6.4992 -0.4895 21 6 11.9243 -7.4950 0.6358 22 6 10.6975 -6.9476 1.3686 23 6 9.8730 -7.9949 2.1311 24 6 10.1981 -7.7155 3.6213 25 6 10.2951 -6.1697 3.6689 26 6 10.9727 -5.7903 2.3336 27 6 7.4515 -3.9201 0.0081 28 1 -0.4851 0.8400 -0.0004 29 1 3.8745 -0.6798 0.8912 30 1 3.8752 -0.6803 -0.8888 31 1 3.6586 -3.1508 -0.8876 32 1 3.6579 -3.1498 0.8924 33 1 4.2335 -4.9546 0.0026 34 1 5.3473 -7.1479 0.0020 35 1 7.8038 -7.2849 0.0025 36 1 10.0041 -4.4247 0.0101 37 1 11.7252 -6.9105 -1.4900 38 1 12.0639 -5.5249 -0.3659 39 1 11.8264 -8.5391 0.3388 40 1 12.8671 -7.2846 1.1408 41 1 8.8089 -7.8570 1.9396 42 1 10.1847 -9.0022 1.8543 43 1 11.1483 -8.1706 3.9009 44 1 9.3960 -8.0720 4.2676 45 1 10.9089 -5.8519 4.5118 46 1 9.3011 -5.7270 3.7316 47 1 12.0464 -5.6713 2.4791 48 1 10.5424 -4.8677 1.9442 49 1 8.0410 -3.0152 0.0124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189196258.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:39 Heat of formation + Delta-G solvation = -23.624558 kcal Electronic energy + Delta-G solvation = -25900.612417 eV Core-core repulsion = 22405.812833 eV Total energy + Delta-G solvation = -3494.799585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.62298 -40.79132 -38.67908 -36.27911 -35.43227 -34.55385 -32.91466 -31.00893 -29.89763 -29.26847 -27.69394 -27.17050 -25.56640 -23.84104 -23.03825 -22.47905 -21.83904 -21.45121 -19.49690 -19.14987 -18.61719 -17.40282 -16.97433 -16.86733 -16.79816 -16.46830 -16.35640 -15.86631 -15.85249 -14.89397 -14.71598 -14.47912 -14.43455 -14.23078 -14.07138 -13.93498 -13.57811 -13.33753 -13.27534 -12.68709 -12.61209 -12.45773 -12.31601 -12.06112 -11.98923 -11.97638 -11.85536 -11.77278 -11.72427 -11.53157 -11.41766 -11.34182 -11.30513 -10.90573 -10.82256 -10.57378 -9.22149 -8.35519 -8.28677 -6.42300 0.57928 0.70178 1.35261 1.36642 1.49714 2.19236 2.32659 2.72679 2.95679 2.99225 3.53645 3.59531 3.67025 3.88091 3.98995 4.06996 4.17142 4.22969 4.23345 4.32243 4.35179 4.37457 4.47797 4.59305 4.62409 4.66818 4.71644 4.73087 4.79059 4.84965 4.96885 4.98689 5.00190 5.08229 5.11826 5.12035 5.23348 5.28519 5.29472 5.31209 5.37452 5.44948 5.49428 5.50290 5.51729 5.55191 5.68227 5.76855 6.15759 6.45537 6.59367 6.63086 6.84332 7.22784 8.80252 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.023734 B = 0.002339 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.471611 B =11967.611888 C =12014.743414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.251 1.251 7 C -0.537 4.537 8 H 0.041 0.959 9 C -0.006 4.006 10 C 0.089 3.911 11 O -0.337 6.337 12 C 0.154 3.846 13 C -0.285 4.285 14 C -0.035 4.035 15 C -0.234 4.234 16 C 0.258 3.742 17 N -0.722 5.722 18 C 0.133 3.867 19 H 0.107 0.893 20 C -0.140 4.140 21 C -0.120 4.120 22 C -0.096 4.096 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.127 4.127 26 C -0.099 4.099 27 C -0.250 4.250 28 H 0.270 0.730 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.116 0.884 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.403 0.597 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.045 0.955 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.384 -18.671 2.575 34.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.175 1.175 7 C -0.575 4.575 8 H 0.060 0.940 9 C -0.043 4.043 10 C 0.015 3.985 11 O -0.251 6.251 12 C 0.107 3.893 13 C -0.305 4.305 14 C -0.053 4.053 15 C -0.257 4.257 16 C 0.153 3.847 17 N -0.349 5.349 18 C 0.028 3.972 19 H 0.125 0.875 20 C -0.178 4.178 21 C -0.157 4.157 22 C -0.098 4.098 23 C -0.150 4.150 24 C -0.159 4.159 25 C -0.164 4.164 26 C -0.137 4.137 27 C -0.274 4.274 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.240 0.760 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 29.379 -18.545 2.559 34.837 hybrid contribution -0.651 1.208 0.081 1.375 sum 28.728 -17.337 2.640 33.658 Atomic orbital electron populations 1.70025 1.08074 1.28519 1.51550 1.25881 0.95648 1.03311 0.93632 0.85671 0.79395 0.78274 0.79441 1.18892 1.20333 1.17515 1.21105 0.90486 0.93905 1.51964 0.94042 1.19446 0.94413 0.92716 0.97743 1.22630 0.75941 0.99390 1.00564 1.85998 1.22746 1.28220 1.88143 1.19087 0.92474 0.84301 0.93411 1.21188 1.00028 0.93033 1.16279 1.20924 0.94539 0.96621 0.93239 1.20729 0.93372 0.97373 1.14193 1.17419 0.84758 0.92072 0.90431 1.44700 1.01328 1.08374 1.80504 1.22621 0.92926 0.85348 0.96343 0.87534 1.23287 0.94148 1.00708 0.99680 1.22811 0.97343 0.99330 0.96241 1.22541 0.96736 0.95972 0.94548 1.22310 0.99386 0.98578 0.94717 1.22488 1.01524 0.95261 0.96649 1.22374 0.99856 0.96549 0.97661 1.21814 1.00382 0.97500 0.93986 1.19773 0.91214 0.97664 1.18736 0.92066 0.95491 0.95532 0.92565 0.92635 0.86604 0.83831 0.84042 0.76032 0.90158 0.89527 0.88798 0.90348 0.92388 0.90414 0.90789 0.92198 0.91536 0.93651 0.91053 0.92133 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.97 13.96 21.44 0.30 -58.67 16 2 C 0.01 0.79 5.47 84.65 0.46 1.26 16 3 Si 0.95 44.93 27.47 68.60 1.88 46.81 16 4 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 7 C -0.54 -31.52 9.66 25.60 0.25 -31.27 16 8 H 0.04 2.63 7.99 -2.91 -0.02 2.60 16 9 C -0.01 -0.28 4.41 29.85 0.13 -0.15 16 10 C 0.09 3.91 4.68 71.98 0.34 4.25 16 11 O -0.34 -13.96 10.13 -92.41 -0.94 -14.90 16 12 C 0.15 5.48 6.68 22.49 0.15 5.63 16 13 C -0.28 -9.27 9.04 22.39 0.20 -9.07 16 14 C -0.03 -0.89 10.03 22.23 0.22 -0.66 16 15 C -0.23 -5.33 9.22 22.42 0.21 -5.12 16 16 C 0.26 6.16 6.65 38.20 0.25 6.41 16 17 N -0.72 -12.24 4.24 -317.51 -1.35 -13.59 16 18 C 0.13 1.68 3.46 45.31 0.16 1.83 16 19 H 0.11 1.35 6.33 -2.39 -0.02 1.33 16 20 C -0.14 -1.26 7.67 31.21 0.24 -1.02 16 21 C -0.12 -0.96 7.28 30.91 0.22 -0.73 16 22 C -0.10 -1.11 1.11 -51.92 -0.06 -1.17 16 23 C -0.11 -1.41 6.20 31.49 0.20 -1.21 16 24 C -0.12 -1.60 6.91 31.97 0.22 -1.38 16 25 C -0.13 -1.95 6.84 31.76 0.22 -1.73 16 26 C -0.10 -1.35 6.05 31.15 0.19 -1.16 16 27 C -0.25 -7.50 9.83 22.49 0.22 -7.28 16 28 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.03 1.34 7.20 -2.38 -0.02 1.32 16 30 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 31 H 0.06 2.41 7.66 -2.39 -0.02 2.40 16 32 H 0.06 2.39 7.66 -2.39 -0.02 2.37 16 33 H 0.12 3.92 6.29 -2.91 -0.02 3.90 16 34 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.14 2.47 5.59 -2.91 -0.02 2.45 16 36 H 0.40 6.12 8.11 -92.71 -0.75 5.37 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.76 8.10 -2.39 -0.02 0.74 16 39 H 0.09 0.59 7.94 -2.39 -0.02 0.57 16 40 H 0.08 0.58 7.87 -2.39 -0.02 0.56 16 41 H 0.06 0.89 7.54 -2.39 -0.02 0.88 16 42 H 0.08 0.76 7.81 -2.38 -0.02 0.74 16 43 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.07 0.83 7.74 -2.39 -0.02 0.81 16 48 H 0.06 0.96 6.22 -2.39 -0.01 0.94 16 49 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -67.19 380.49 3.85 -63.34 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.13 Total: 19.58 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 3.82 Total: -42.58 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -1.05 Total: -72.25 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.94 Total: -14.90 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.81 kcal Total: -67.19 3.85 -63.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189196258.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.718 kcal (2) G-P(sol) polarization free energy of solvation -67.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds