Wall clock time and date at job start Tue Mar 31 2020 11:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48496 * 109.47047 * 269.99472 * 3 2 1 5 5 H 1.48498 * 109.47125 * 29.99904 * 3 2 1 6 6 H 1.48502 * 109.47054 * 149.99623 * 3 2 1 7 7 C 1.37881 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99419 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00324 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47320 * 175.71116 * 9 7 2 11 11 C 1.46902 * 110.99912 * 75.56585 * 10 9 7 12 12 C 1.53000 * 109.47101 * 190.00398 * 11 10 9 13 13 C 1.52998 * 109.46913 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47206 * 179.97438 * 13 12 11 15 15 C 1.38285 * 120.11557 * 270.27617 * 14 13 12 16 16 C 1.37929 * 120.35302 * 180.02562 * 15 14 13 17 17 C 1.39279 * 120.24049 * 359.58497 * 16 15 14 18 18 C 1.38890 * 118.87443 * 0.40641 * 17 16 15 19 19 C 1.37743 * 120.78680 * 359.65162 * 18 17 16 20 20 C 1.51639 * 107.03961 * 179.45731 * 18 17 16 21 21 C 1.54710 * 101.92019 * 344.50010 * 20 18 17 22 22 O 1.36139 * 129.88777 * 180.84438 * 17 16 15 23 23 C 1.46900 * 111.00251 * 199.52195 * 10 9 7 24 24 C 1.52996 * 109.47003 * 71.58762 * 23 10 9 25 25 C 1.53002 * 117.49844 * 244.14147 * 24 23 10 26 26 C 1.53003 * 60.00309 * 252.51187 * 25 24 23 27 27 H 0.96994 * 119.99637 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47296 * 55.71541 * 9 7 2 29 29 H 1.08994 * 109.47141 * 295.71437 * 9 7 2 30 30 H 1.09000 * 109.47041 * 69.99821 * 11 10 9 31 31 H 1.09004 * 109.47070 * 310.00195 * 11 10 9 32 32 H 1.08999 * 109.46901 * 59.99798 * 12 11 10 33 33 H 1.09004 * 109.46993 * 299.99844 * 12 11 10 34 34 H 1.09005 * 109.47233 * 59.99877 * 13 12 11 35 35 H 1.09004 * 109.47070 * 299.99682 * 13 12 11 36 36 H 1.08009 * 119.82614 * 359.81741 * 15 14 13 37 37 H 1.08000 * 119.87747 * 179.85912 * 16 15 14 38 38 H 1.07996 * 120.01090 * 180.32264 * 19 18 17 39 39 H 1.09010 * 110.94057 * 226.34878 * 20 18 17 40 40 H 1.09000 * 110.97459 * 102.67121 * 20 18 17 41 41 H 1.08997 * 110.75229 * 266.98644 * 21 20 18 42 42 H 1.09006 * 110.74743 * 143.63103 * 21 20 18 43 43 H 1.09000 * 109.46849 * 191.58685 * 23 10 9 44 44 H 1.08999 * 109.46991 * 311.58768 * 23 10 9 45 45 H 1.09000 * 115.55365 * 29.85153 * 24 23 10 46 46 H 1.09001 * 117.49919 * 0.02562 * 25 24 23 47 47 H 1.08999 * 117.49517 * 145.02293 * 25 24 23 48 48 H 1.08998 * 117.49887 * 252.51329 * 26 25 24 49 49 H 1.08996 * 117.49796 * 107.48501 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2023 -3.6139 -0.1024 11 6 2.8882 -3.8404 1.1767 12 6 4.0373 -4.8295 0.9710 13 6 4.7513 -5.0659 2.3034 14 6 5.8827 -6.0406 2.1010 15 6 5.6614 -7.3987 2.2380 16 6 6.6935 -8.2951 2.0544 17 6 7.9668 -7.8400 1.7206 18 6 8.1767 -6.4737 1.5857 19 6 7.1449 -5.5802 1.7708 20 6 9.6398 -6.2812 1.2368 21 6 10.2395 -7.6598 1.6020 22 8 9.1094 -8.5404 1.4814 23 6 1.5322 -4.8369 -0.5643 24 6 1.1680 -4.6914 -2.0431 25 6 -0.3178 -4.6926 -2.4082 26 6 0.5530 -5.9056 -2.7420 27 1 -0.4849 0.8400 -0.0004 28 1 0.5683 -2.5246 -0.8489 29 1 0.6829 -2.5907 0.9262 30 1 2.1825 -4.2486 1.9001 31 1 3.2844 -2.8956 1.5489 32 1 4.7430 -4.4212 0.2476 33 1 3.6412 -5.7743 0.5988 34 1 4.0453 -5.4744 3.0265 35 1 5.1474 -4.1212 2.6760 36 1 4.6759 -7.7593 2.4934 37 1 6.5126 -9.3540 2.1655 38 1 7.3209 -4.5207 1.6577 39 1 10.0839 -5.4906 1.8419 40 1 9.7632 -6.0718 0.1742 41 1 10.6198 -7.6572 2.6235 42 1 11.0232 -7.9388 0.8976 43 1 2.2012 -5.6879 -0.4369 44 1 0.6255 -4.9968 0.0191 45 1 1.8303 -4.0549 -2.6300 46 1 -1.0358 -4.7966 -1.5948 47 1 -0.6332 -4.0567 -3.2354 48 1 0.8103 -6.0677 -3.7887 49 1 0.4078 -6.8080 -2.1482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193245808.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:52 Heat of formation + Delta-G solvation = 8.445166 kcal Electronic energy + Delta-G solvation = -25530.247760 eV Core-core repulsion = 22036.838823 eV Total energy + Delta-G solvation = -3493.408937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21124 -38.27603 -37.68681 -35.72404 -33.53582 -32.83091 -32.30057 -29.69636 -29.31092 -27.59748 -26.11966 -24.23748 -23.49538 -22.18240 -21.97543 -21.71504 -20.63416 -20.43524 -19.43585 -17.53669 -16.86424 -16.38554 -16.29329 -15.53604 -15.38664 -14.61794 -14.40644 -14.28383 -14.21092 -13.82428 -13.47997 -13.38783 -13.31016 -13.16991 -12.76810 -12.52789 -12.12388 -12.00818 -11.96678 -11.68644 -11.51863 -11.24633 -11.14665 -10.92417 -10.86180 -10.73897 -10.71028 -10.62637 -10.33008 -10.17228 -9.84520 -9.80502 -9.28610 -9.09017 -8.97770 -8.37202 -8.08980 -7.19605 -5.97634 -3.98185 1.18920 1.28267 3.08141 3.34033 3.39981 3.43247 3.58339 4.20294 4.25393 4.35190 4.45980 4.68098 4.75549 4.79121 4.92793 5.05730 5.10494 5.26187 5.31488 5.32304 5.37340 5.39787 5.45153 5.49675 5.50768 5.55068 5.76569 5.79963 5.86958 5.94157 6.01321 6.03369 6.07761 6.13828 6.24049 6.28459 6.29427 6.33326 6.38853 6.49643 6.51170 6.56764 6.72976 6.77410 6.86949 7.06577 7.34834 7.42585 7.87212 8.19059 8.29574 8.61363 9.09670 9.65369 11.12963 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011852 B = 0.002884 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.877722 B = 9705.007950 C =11297.998323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.192 3.808 10 N -0.534 5.534 11 C 0.064 3.936 12 C -0.109 4.109 13 C -0.077 4.077 14 C -0.095 4.095 15 C -0.084 4.084 16 C -0.136 4.136 17 C 0.091 3.909 18 C -0.173 4.173 19 C -0.066 4.066 20 C -0.111 4.111 21 C 0.052 3.948 22 O -0.309 6.309 23 C 0.084 3.916 24 C -0.127 4.127 25 C -0.179 4.179 26 C -0.190 4.190 27 H 0.260 0.740 28 H 0.039 0.961 29 H -0.014 1.014 30 H 0.017 0.983 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.022 0.978 45 H 0.111 0.889 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.528 -15.853 3.347 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.258 5.258 11 C -0.064 4.064 12 C -0.147 4.147 13 C -0.115 4.115 14 C -0.096 4.096 15 C -0.102 4.102 16 C -0.154 4.154 17 C 0.047 3.953 18 C -0.174 4.174 19 C -0.084 4.084 20 C -0.148 4.148 21 C -0.023 4.023 22 O -0.223 6.223 23 C -0.045 4.045 24 C -0.146 4.146 25 C -0.216 4.216 26 C -0.228 4.228 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.003 0.997 30 H 0.035 0.965 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.083 0.917 44 H 0.040 0.960 45 H 0.129 0.871 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.106 0.894 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.763 -15.821 2.954 21.839 hybrid contribution -0.190 0.915 0.511 1.065 sum 14.573 -14.906 3.465 21.132 Atomic orbital electron populations 1.69964 1.06008 1.26580 1.51418 1.24982 0.94829 0.99174 0.95703 0.86544 0.79717 0.83347 0.78060 1.20732 1.21427 1.19911 1.21180 0.93463 0.89995 1.49378 0.92022 1.19757 0.90226 0.87300 0.95984 1.62085 1.31629 1.04628 1.27475 1.21977 0.94508 0.99055 0.90893 1.21642 0.97807 0.99403 0.95834 1.20570 0.94664 0.97606 0.98662 1.19872 0.94606 0.94322 1.00755 1.20796 0.98258 0.92300 0.98865 1.20214 0.89911 1.00423 1.04889 1.19532 0.88380 0.90102 0.97317 1.20724 0.96295 0.93816 1.06537 1.20250 0.91044 0.99258 0.97876 1.21789 0.91656 0.98227 1.03098 1.23806 0.88357 0.87846 1.02299 1.86807 1.13360 1.36244 1.85900 1.21630 0.96429 0.93808 0.92598 1.22255 0.95679 0.99826 0.96832 1.22954 0.94502 1.00736 1.03365 1.22932 1.06257 0.92871 1.00741 0.93062 0.94320 0.99652 0.96476 0.90072 0.91244 0.92406 0.91164 0.90779 0.85174 0.85682 0.85606 0.89120 0.89146 0.90708 0.87784 0.91687 0.96023 0.87135 0.89293 0.89217 0.89413 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 2 C 0.05 1.53 5.46 -17.81 -0.10 1.43 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.50 -14.01 8.60 -34.44 -0.30 -14.31 16 8 H 0.06 1.71 7.66 -52.49 -0.40 1.31 16 9 C 0.19 4.97 4.59 -4.98 -0.02 4.95 16 10 N -0.53 -11.30 4.38 -236.07 -1.04 -12.33 16 11 C 0.06 1.18 4.78 -3.82 -0.02 1.16 16 12 C -0.11 -1.61 5.16 -26.73 -0.14 -1.75 16 13 C -0.08 -0.95 5.35 -27.88 -0.15 -1.10 16 14 C -0.10 -1.14 5.14 -104.56 -0.54 -1.68 16 15 C -0.08 -0.94 9.68 -39.68 -0.38 -1.33 16 16 C -0.14 -1.55 10.06 -39.31 -0.40 -1.94 16 17 C 0.09 1.11 7.04 -38.95 -0.27 0.84 16 18 C -0.17 -1.98 6.27 -104.10 -0.65 -2.63 16 19 C -0.07 -0.78 9.70 -39.72 -0.39 -1.17 16 20 C -0.11 -0.92 7.12 -26.52 -0.19 -1.11 16 21 C 0.05 0.40 8.01 38.06 0.30 0.71 16 22 O -0.31 -3.57 11.10 -20.18 -0.22 -3.79 16 23 C 0.08 1.52 5.11 -3.83 -0.02 1.50 16 24 C -0.13 -2.23 4.96 -90.62 -0.45 -2.68 16 25 C -0.18 -2.93 9.97 -26.73 -0.27 -3.20 16 26 C -0.19 -2.71 10.25 -26.72 -0.27 -2.98 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.04 1.07 6.93 -51.93 -0.36 0.71 16 29 H -0.01 -0.40 8.00 -51.93 -0.42 -0.81 16 30 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 31 H 0.08 1.64 7.32 -51.93 -0.38 1.26 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.83 6.29 -51.93 -0.33 0.50 16 34 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 36 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 1.06 5.95 -51.93 -0.31 0.75 16 44 H 0.02 0.41 7.79 -51.93 -0.40 0.00 16 45 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16 46 H 0.09 1.47 8.03 -51.93 -0.42 1.06 16 47 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 48 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 49 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 394.91 15.07 5.95 5.95 Total: -1.00 -31.02 394.91 -12.32 -43.34 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.48 Total: 1.51 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -4.24 Total: -25.29 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.30 Total: -38.37 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.22 Total: -3.79 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.02 -12.32 -43.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193245808.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.787 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds