Wall clock time and date at job start Tue Mar 31 2020 11:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48496 * 109.47047 * 269.99472 * 3 2 1 5 5 H 1.48498 * 109.47125 * 29.99904 * 3 2 1 6 6 H 1.48502 * 109.47054 * 149.99623 * 3 2 1 7 7 C 1.37881 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99419 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00324 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47320 * 175.71116 * 9 7 2 11 11 C 1.46902 * 110.99912 * 75.56585 * 10 9 7 12 12 C 1.53000 * 109.47101 * 190.00398 * 11 10 9 13 13 C 1.52998 * 109.46913 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47206 * 179.97438 * 13 12 11 15 15 C 1.38285 * 120.11557 * 270.27617 * 14 13 12 16 16 C 1.37929 * 120.35302 * 180.02562 * 15 14 13 17 17 C 1.39279 * 120.24049 * 359.58497 * 16 15 14 18 18 C 1.38890 * 118.87443 * 0.40641 * 17 16 15 19 19 C 1.37743 * 120.78680 * 359.65162 * 18 17 16 20 20 C 1.51639 * 107.03961 * 179.45731 * 18 17 16 21 21 C 1.54710 * 101.92019 * 344.50010 * 20 18 17 22 22 O 1.36139 * 129.88777 * 180.84438 * 17 16 15 23 23 C 1.46900 * 111.00251 * 199.52195 * 10 9 7 24 24 C 1.52996 * 109.47003 * 71.58762 * 23 10 9 25 25 C 1.53002 * 117.49844 * 244.14147 * 24 23 10 26 26 C 1.53003 * 60.00309 * 252.51187 * 25 24 23 27 27 H 0.96994 * 119.99637 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47296 * 55.71541 * 9 7 2 29 29 H 1.08994 * 109.47141 * 295.71437 * 9 7 2 30 30 H 1.09000 * 109.47041 * 69.99821 * 11 10 9 31 31 H 1.09004 * 109.47070 * 310.00195 * 11 10 9 32 32 H 1.08999 * 109.46901 * 59.99798 * 12 11 10 33 33 H 1.09004 * 109.46993 * 299.99844 * 12 11 10 34 34 H 1.09005 * 109.47233 * 59.99877 * 13 12 11 35 35 H 1.09004 * 109.47070 * 299.99682 * 13 12 11 36 36 H 1.08009 * 119.82614 * 359.81741 * 15 14 13 37 37 H 1.08000 * 119.87747 * 179.85912 * 16 15 14 38 38 H 1.07996 * 120.01090 * 180.32264 * 19 18 17 39 39 H 1.09010 * 110.94057 * 226.34878 * 20 18 17 40 40 H 1.09000 * 110.97459 * 102.67121 * 20 18 17 41 41 H 1.08997 * 110.75229 * 266.98644 * 21 20 18 42 42 H 1.09006 * 110.74743 * 143.63103 * 21 20 18 43 43 H 1.09000 * 109.46849 * 191.58685 * 23 10 9 44 44 H 1.08999 * 109.46991 * 311.58768 * 23 10 9 45 45 H 1.09000 * 115.55365 * 29.85153 * 24 23 10 46 46 H 1.09001 * 117.49919 * 0.02562 * 25 24 23 47 47 H 1.08999 * 117.49517 * 145.02293 * 25 24 23 48 48 H 1.08998 * 117.49887 * 252.51329 * 26 25 24 49 49 H 1.08996 * 117.49796 * 107.48501 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2023 -3.6139 -0.1024 11 6 2.8882 -3.8404 1.1767 12 6 4.0373 -4.8295 0.9710 13 6 4.7513 -5.0659 2.3034 14 6 5.8827 -6.0406 2.1010 15 6 5.6614 -7.3987 2.2380 16 6 6.6935 -8.2951 2.0544 17 6 7.9668 -7.8400 1.7206 18 6 8.1767 -6.4737 1.5857 19 6 7.1449 -5.5802 1.7708 20 6 9.6398 -6.2812 1.2368 21 6 10.2395 -7.6598 1.6020 22 8 9.1094 -8.5404 1.4814 23 6 1.5322 -4.8369 -0.5643 24 6 1.1680 -4.6914 -2.0431 25 6 -0.3178 -4.6926 -2.4082 26 6 0.5530 -5.9056 -2.7420 27 1 -0.4849 0.8400 -0.0004 28 1 0.5683 -2.5246 -0.8489 29 1 0.6829 -2.5907 0.9262 30 1 2.1825 -4.2486 1.9001 31 1 3.2844 -2.8956 1.5489 32 1 4.7430 -4.4212 0.2476 33 1 3.6412 -5.7743 0.5988 34 1 4.0453 -5.4744 3.0265 35 1 5.1474 -4.1212 2.6760 36 1 4.6759 -7.7593 2.4934 37 1 6.5126 -9.3540 2.1655 38 1 7.3209 -4.5207 1.6577 39 1 10.0839 -5.4906 1.8419 40 1 9.7632 -6.0718 0.1742 41 1 10.6198 -7.6572 2.6235 42 1 11.0232 -7.9388 0.8976 43 1 2.2012 -5.6879 -0.4369 44 1 0.6255 -4.9968 0.0191 45 1 1.8303 -4.0549 -2.6300 46 1 -1.0358 -4.7966 -1.5948 47 1 -0.6332 -4.0567 -3.2354 48 1 0.8103 -6.0677 -3.7887 49 1 0.4078 -6.8080 -2.1482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193245808.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:51 Heat of formation + Delta-G solvation = -7.216010 kcal Electronic energy + Delta-G solvation = -25530.926879 eV Core-core repulsion = 22036.838823 eV Total energy + Delta-G solvation = -3494.088057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.98883 -39.54032 -38.79549 -37.12851 -35.07450 -34.09206 -33.56250 -30.83015 -30.09971 -29.46646 -27.42608 -25.84100 -24.32262 -23.48417 -23.14067 -22.80274 -22.03385 -21.45778 -20.96197 -18.50427 -18.30946 -17.64956 -17.05011 -17.00035 -16.58298 -16.42313 -15.66199 -15.62041 -15.30136 -15.02214 -14.80514 -14.50542 -14.21256 -14.09598 -14.05272 -13.80115 -13.61088 -13.29345 -13.04626 -12.86503 -12.70603 -12.61441 -12.57358 -12.48871 -12.34640 -12.20271 -12.03399 -11.77855 -11.64637 -11.45883 -11.40098 -11.36571 -11.04646 -10.62050 -10.52842 -9.81706 -8.97485 -8.93619 -8.16163 -6.25529 0.34384 0.40526 1.41137 1.42569 1.53419 2.36085 2.41997 2.72061 2.95096 3.15113 3.31823 3.50294 3.68261 3.88046 3.97788 4.01935 4.03977 4.12853 4.16438 4.21721 4.34021 4.44161 4.50129 4.51687 4.55219 4.60893 4.67741 4.69200 4.78125 4.79212 4.84056 4.86757 4.89450 4.95849 5.01554 5.05154 5.14520 5.22556 5.26537 5.29174 5.34815 5.40299 5.43932 5.44449 5.48039 5.69098 5.70966 5.74408 6.13639 6.25474 6.47267 6.71203 6.90779 7.43502 8.94230 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011852 B = 0.002884 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.877722 B = 9705.007950 C =11297.998323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.211 3.789 10 N -0.542 5.542 11 C 0.065 3.935 12 C -0.092 4.092 13 C -0.068 4.068 14 C -0.106 4.106 15 C -0.086 4.086 16 C -0.145 4.145 17 C 0.076 3.924 18 C -0.184 4.184 19 C -0.079 4.079 20 C -0.110 4.110 21 C 0.048 3.952 22 O -0.327 6.327 23 C 0.088 3.912 24 C -0.154 4.154 25 C -0.194 4.194 26 C -0.150 4.150 27 H 0.263 0.737 28 H 0.013 0.987 29 H -0.046 1.046 30 H 0.019 0.981 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.148 0.852 37 H 0.139 0.861 38 H 0.130 0.870 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.129 0.871 43 H 0.091 0.909 44 H 0.014 0.986 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.108 0.892 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.334 -16.970 3.222 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.084 3.916 10 N -0.266 5.266 11 C -0.063 4.063 12 C -0.130 4.130 13 C -0.106 4.106 14 C -0.106 4.106 15 C -0.104 4.104 16 C -0.164 4.164 17 C 0.031 3.969 18 C -0.185 4.185 19 C -0.097 4.097 20 C -0.147 4.147 21 C -0.027 4.027 22 O -0.242 6.242 23 C -0.040 4.040 24 C -0.173 4.173 25 C -0.231 4.231 26 C -0.187 4.187 27 H 0.071 0.929 28 H 0.032 0.968 29 H -0.028 1.028 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.148 0.852 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.147 0.853 43 H 0.109 0.891 44 H 0.032 0.968 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.126 0.874 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 16.591 -16.958 2.830 23.892 hybrid contribution -0.736 1.208 0.547 1.516 sum 15.855 -15.750 3.377 22.602 Atomic orbital electron populations 1.70094 1.07657 1.27651 1.52218 1.25880 0.95700 1.03008 0.95101 0.85444 0.78648 0.78566 0.78338 1.20062 1.20860 1.18783 1.21480 0.93495 0.91227 1.49306 0.92230 1.19359 0.90204 0.88840 0.93162 1.62034 1.30626 1.04958 1.28970 1.21998 0.95472 0.99097 0.89709 1.21460 0.96070 0.98287 0.97141 1.20452 0.94915 0.97959 0.97291 1.19858 0.94488 0.94585 1.01703 1.21002 0.99071 0.91933 0.98387 1.20476 0.89883 1.01306 1.04710 1.19823 0.88935 0.90614 0.97527 1.21072 0.97760 0.93618 1.06044 1.20411 0.91357 0.99711 0.98185 1.21888 0.89843 0.99196 1.03745 1.24102 0.87741 0.86901 1.03917 1.86777 1.14023 1.37467 1.85923 1.21683 0.96390 0.93065 0.92878 1.22184 0.95970 1.02647 0.96461 1.22979 0.93870 1.02898 1.03331 1.23023 1.02005 0.91942 1.01709 0.92873 0.96848 1.02835 0.96279 0.92353 0.92374 0.91466 0.90047 0.90903 0.83450 0.84309 0.85193 0.87465 0.88611 0.89431 0.85345 0.89126 0.96807 0.89209 0.89949 0.89505 0.87361 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.05 13.29 21.45 0.28 -56.76 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.52 -29.69 8.60 25.60 0.22 -29.47 16 8 H 0.06 3.37 7.66 -2.91 -0.02 3.35 16 9 C 0.21 11.37 4.59 85.55 0.39 11.77 16 10 N -0.54 -23.49 4.38 -900.80 -3.95 -27.44 16 11 C 0.07 2.44 4.78 86.30 0.41 2.85 16 12 C -0.09 -2.64 5.16 30.59 0.16 -2.48 16 13 C -0.07 -1.61 5.35 29.85 0.16 -1.45 16 14 C -0.11 -2.42 5.14 -19.83 -0.10 -2.52 16 15 C -0.09 -1.79 9.68 22.21 0.21 -1.58 16 16 C -0.15 -3.11 10.06 22.45 0.23 -2.89 16 17 C 0.08 1.75 7.04 22.68 0.16 1.91 16 18 C -0.18 -3.99 6.27 -19.53 -0.12 -4.11 16 19 C -0.08 -1.79 9.70 22.18 0.22 -1.57 16 20 C -0.11 -1.62 7.12 30.73 0.22 -1.40 16 21 C 0.05 0.63 8.01 72.57 0.58 1.21 16 22 O -0.33 -7.09 11.10 -95.13 -1.06 -8.14 16 23 C 0.09 3.18 5.11 86.30 0.44 3.62 16 24 C -0.15 -5.38 4.96 -10.79 -0.05 -5.43 16 25 C -0.19 -6.37 9.97 30.60 0.30 -6.07 16 26 C -0.15 -3.92 10.25 30.60 0.31 -3.60 16 27 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.01 0.78 6.93 -2.38 -0.02 0.76 16 29 H -0.05 -2.71 8.00 -2.39 -0.02 -2.73 16 30 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 31 H 0.06 2.42 7.32 -2.39 -0.02 2.41 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.81 6.29 -2.39 -0.01 1.79 16 34 H 0.08 1.74 8.09 -2.38 -0.02 1.72 16 35 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 36 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 39 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 42 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.09 2.79 5.95 -2.39 -0.01 2.78 16 44 H 0.01 0.52 7.79 -2.39 -0.02 0.50 16 45 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 46 H 0.08 2.78 8.03 -2.39 -0.02 2.76 16 47 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 48 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 49 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -68.58 394.91 2.41 -66.17 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.90 Total: 20.03 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 4.20 Total: -40.70 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -3.66 Total: -84.21 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -1.06 Total: -8.14 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -68.58 2.41 -66.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193245808.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.951 kcal (2) G-P(sol) polarization free energy of solvation -68.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds