Wall clock time and date at job start Tue Mar 31 2020 10:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34951 * 126.04013 * 2 1 4 4 C 1.35317 * 107.74516 * 180.14679 * 3 2 1 5 5 C 1.50695 * 126.04106 * 179.87190 * 4 3 2 6 6 N 1.46894 * 109.47363 * 261.45922 * 5 4 3 7 7 C 1.46901 * 111.00038 * 63.29356 * 6 5 4 8 8 C 1.50696 * 109.47084 * 189.99934 * 7 6 5 9 9 H 1.08000 * 120.00029 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00056 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99738 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00102 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.46790 * 90.00183 * 12 10 8 14 14 H 1.48503 * 109.46970 * 210.00353 * 12 10 8 15 15 H 1.48499 * 109.47282 * 330.00406 * 12 10 8 16 16 C 1.46905 * 110.99971 * 187.24282 * 6 5 4 17 17 C 1.53003 * 109.46794 * 87.45815 * 16 6 5 18 18 C 1.53004 * 109.47099 * 59.22562 * 17 16 6 19 19 C 1.53001 * 109.46956 * 179.22792 * 17 16 6 20 20 C 1.53002 * 109.47105 * 299.22886 * 17 16 6 21 21 C 1.39875 * 107.91981 * 359.61382 * 4 3 2 22 22 C 1.50696 * 125.89807 * 180.26485 * 21 4 3 23 23 F 1.39897 * 109.47053 * 301.57306 * 22 21 4 24 24 F 1.39899 * 109.47569 * 61.57843 * 22 21 4 25 25 N 1.30841 * 108.20338 * 0.23918 * 21 4 3 26 26 H 1.08998 * 109.47038 * 270.26126 * 1 2 3 27 27 H 1.09005 * 109.46479 * 30.25826 * 1 2 3 28 28 H 1.08996 * 109.47471 * 150.25692 * 1 2 3 29 29 H 1.07995 * 126.12388 * 359.97438 * 3 2 1 30 30 H 1.09005 * 109.46867 * 141.45502 * 5 4 3 31 31 H 1.09008 * 109.46531 * 21.46186 * 5 4 3 32 32 H 1.09000 * 109.46994 * 309.99695 * 7 6 5 33 33 H 1.08995 * 109.47191 * 69.99850 * 7 6 5 34 34 H 0.97002 * 119.99521 * 179.97438 * 11 10 8 35 35 H 1.08994 * 109.47061 * 207.45507 * 16 6 5 36 36 H 1.08996 * 109.46866 * 327.46225 * 16 6 5 37 37 H 1.08999 * 109.46724 * 67.04100 * 18 17 16 38 38 H 1.09002 * 109.46751 * 187.03604 * 18 17 16 39 39 H 1.08999 * 109.47354 * 307.04124 * 18 17 16 40 40 H 1.08996 * 109.46947 * 64.87759 * 19 17 16 41 41 H 1.09002 * 109.46643 * 184.87536 * 19 17 16 42 42 H 1.08996 * 109.46954 * 304.87360 * 19 17 16 43 43 H 1.08999 * 109.47111 * 68.65061 * 20 17 16 44 44 H 1.09000 * 109.46764 * 188.64746 * 20 17 16 45 45 H 1.09002 * 109.47122 * 308.64588 * 20 17 16 46 46 H 1.09004 * 109.47094 * 181.57459 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 -0.0033 5 6 4.7681 1.5451 -0.0072 6 7 5.2821 1.6626 -1.3783 7 6 4.3045 2.3253 -2.2520 8 6 4.7534 2.2104 -3.6859 9 1 5.6727 1.6962 -3.9245 10 6 3.9900 2.7609 -4.6935 11 7 2.8702 3.3866 -4.4031 12 14 4.5468 2.6191 -6.4710 13 1 3.9905 1.3777 -7.0664 14 1 4.0623 3.7956 -7.2368 15 1 6.0301 2.5713 -6.5228 16 6 6.5701 2.3687 -1.3989 17 6 7.7056 1.3644 -1.1912 18 6 7.6649 0.3119 -2.3010 19 6 9.0482 2.0970 -1.2319 20 6 7.5389 0.6800 0.1670 21 6 3.5346 -0.7322 0.0036 22 6 4.7496 -1.6238 0.0085 23 9 5.5346 -1.3484 -1.1163 24 9 5.4965 -1.3879 1.1676 25 7 2.2891 -1.1329 0.0056 26 1 -0.3633 0.0047 1.0276 27 1 -0.3632 0.8877 -0.5179 28 1 -0.3634 -0.8922 -0.5098 29 1 1.9282 2.1193 -0.0004 30 1 5.5337 1.1042 0.6313 31 1 4.5066 2.5342 0.3689 32 1 3.3316 1.8476 -2.1365 33 1 4.2275 3.3775 -1.9786 34 1 2.3333 3.7742 -5.1119 35 1 6.6964 2.8661 -2.3605 36 1 6.5906 3.1105 -0.6006 37 1 7.9076 0.7803 -3.2548 38 1 8.3917 -0.4714 -2.0855 39 1 6.6668 -0.1228 -2.3532 40 1 9.1120 2.7856 -0.3894 41 1 9.8597 1.3718 -1.1707 42 1 9.1293 2.6553 -2.1645 43 1 6.6606 0.0350 0.1435 44 1 8.4238 0.0812 0.3831 45 1 7.4139 1.4362 0.9421 46 1 4.4347 -2.6671 -0.0147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274441881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:12 Heat of formation + Delta-G solvation = -35.542374 kcal Electronic energy + Delta-G solvation = -29127.255112 eV Core-core repulsion = 25110.001954 eV Total energy + Delta-G solvation = -4017.253159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.182 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.87256 -47.79718 -42.30467 -39.48470 -36.24683 -34.83601 -34.21544 -31.90524 -29.82832 -29.01862 -28.08156 -27.82558 -27.32544 -25.81939 -24.93442 -22.43246 -22.03009 -20.79294 -19.61836 -18.34998 -18.10524 -18.09919 -18.01091 -16.86843 -16.62425 -16.50971 -15.96443 -15.72798 -15.61999 -14.74458 -14.64567 -14.61889 -14.42368 -14.27781 -14.15581 -14.01320 -13.56238 -13.53644 -13.41097 -13.29341 -13.16580 -12.81439 -12.75024 -12.66106 -12.58240 -12.24155 -12.14871 -12.06578 -11.88299 -11.56351 -11.32863 -11.27019 -11.09759 -10.89734 -10.55191 -10.43147 -9.41649 -8.72722 -8.13241 -6.18084 0.72229 1.39274 1.40001 1.41393 1.49825 1.51853 2.43267 2.81956 3.19599 3.26200 3.52293 3.63195 3.96979 4.01762 4.12113 4.18631 4.19664 4.26340 4.40962 4.42180 4.50426 4.65656 4.67302 4.72395 4.85567 4.90753 4.93530 5.01865 5.04094 5.10829 5.14617 5.22330 5.32530 5.37490 5.38198 5.43350 5.49242 5.57667 5.76873 5.78444 5.97510 6.00116 6.20719 6.48445 6.56172 6.82941 6.99919 7.49463 8.97051 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.009573 B = 0.007194 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.190727 B = 3891.213271 C = 5830.886706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.363 5.363 3 C 0.061 3.939 4 C -0.205 4.205 5 C 0.113 3.887 6 N -0.516 5.516 7 C 0.215 3.785 8 C -0.505 4.505 9 H 0.060 0.940 10 C 0.004 3.996 11 N -0.932 5.932 12 Si 0.953 3.047 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.267 1.267 16 C 0.073 3.927 17 C -0.056 4.056 18 C -0.128 4.128 19 C -0.135 4.135 20 C -0.146 4.146 21 C 0.000 4.000 22 C 0.355 3.645 23 F -0.180 7.180 24 F -0.193 7.193 25 N -0.286 5.286 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.186 0.814 30 H 0.102 0.898 31 H 0.022 0.978 32 H 0.013 0.987 33 H -0.047 1.047 34 H 0.259 0.741 35 H 0.051 0.949 36 H 0.024 0.976 37 H 0.027 0.973 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 -7.400 12.125 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.146 5.146 3 C -0.086 4.086 4 C -0.216 4.216 5 C -0.016 4.016 6 N -0.239 5.239 7 C 0.089 3.911 8 C -0.544 4.544 9 H 0.078 0.922 10 C -0.193 4.193 11 N -0.574 5.574 12 Si 0.779 3.221 13 H -0.205 1.205 14 H -0.209 1.209 15 H -0.191 1.191 16 C -0.055 4.055 17 C -0.057 4.057 18 C -0.186 4.186 19 C -0.193 4.193 20 C -0.203 4.203 21 C -0.166 4.166 22 C 0.300 3.700 23 F -0.161 7.161 24 F -0.174 7.174 25 N -0.111 5.111 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.203 0.797 30 H 0.120 0.880 31 H 0.040 0.960 32 H 0.031 0.969 33 H -0.030 1.030 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.325 -8.759 11.866 14.752 hybrid contribution 0.142 2.069 -0.978 2.292 sum 0.466 -6.691 10.888 12.788 Atomic orbital electron populations 1.22274 0.71266 1.05885 1.05189 1.48651 1.07943 1.02677 1.55295 1.22623 0.90666 0.94203 1.01110 1.19888 0.95155 0.93119 1.13485 1.20821 0.93576 0.95552 0.91611 1.61969 1.03115 1.51894 1.06930 1.19313 0.91364 0.89227 0.91185 1.21509 1.07359 1.33350 0.92190 0.92202 1.25714 0.95236 0.95443 1.02923 1.70065 1.15017 1.38663 1.33620 0.85629 0.78838 0.77346 0.80310 1.20527 1.20947 1.19147 1.22066 0.89738 0.94237 0.99499 1.20454 0.93770 0.95273 0.96159 1.21761 1.02571 0.97799 0.96441 1.21822 0.96016 1.00154 1.01269 1.22187 1.02655 1.00413 0.95053 1.22714 0.94140 0.94764 1.04966 1.19452 0.80118 0.98807 0.71631 1.93066 1.75590 1.95452 1.52009 1.92959 1.78146 1.96255 1.50067 1.76989 1.00457 1.09558 1.24130 0.88106 0.87913 0.88521 0.79662 0.88005 0.95992 0.96941 1.02988 0.93192 0.92992 0.95748 0.95394 0.93027 0.91432 0.92339 0.91507 0.93696 0.90889 0.92414 0.93362 0.83252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.77 11.47 127.77 1.47 3.23 16 2 N -0.36 -10.91 4.01 -369.56 -1.48 -12.39 16 3 C 0.06 2.03 10.31 83.54 0.86 2.89 16 4 C -0.20 -7.43 4.66 -20.14 -0.09 -7.52 16 5 C 0.11 4.16 4.51 85.56 0.39 4.55 16 6 N -0.52 -21.93 3.34 -905.38 -3.02 -24.95 16 7 C 0.22 11.25 4.54 85.56 0.39 11.64 16 8 C -0.51 -28.62 8.13 25.60 0.21 -28.41 16 9 H 0.06 3.39 7.50 -2.91 -0.02 3.37 16 10 C 0.00 0.24 5.46 84.66 0.46 0.70 16 11 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 12 Si 0.95 45.30 29.54 68.60 2.03 47.33 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 15 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 16 C 0.07 2.87 3.96 86.30 0.34 3.21 16 17 C -0.06 -1.83 0.85 -52.18 -0.04 -1.87 16 18 C -0.13 -4.55 8.31 71.98 0.60 -3.95 16 19 C -0.13 -3.70 8.46 71.98 0.61 -3.09 16 20 C -0.15 -4.28 6.84 71.98 0.49 -3.79 16 21 C 0.00 0.00 6.65 43.10 0.29 0.29 16 22 C 0.36 10.36 5.28 71.23 0.38 10.74 16 23 F -0.18 -6.19 13.32 44.97 0.60 -5.59 16 24 F -0.19 -5.42 15.08 44.97 0.68 -4.74 16 25 N -0.29 -9.52 12.58 -47.38 -0.60 -10.12 16 26 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.19 5.55 8.06 -2.91 -0.02 5.52 16 30 H 0.10 3.45 3.76 -2.38 -0.01 3.45 16 31 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.01 0.70 6.08 -2.39 -0.01 0.69 16 33 H -0.05 -2.72 8.12 -2.39 -0.02 -2.74 16 34 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.05 2.35 6.64 -2.39 -0.02 2.34 16 36 H 0.02 0.91 7.82 -2.39 -0.02 0.89 16 37 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 2.73 4.91 -2.39 -0.01 2.72 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 2.29 1.97 -2.39 0.00 2.28 16 44 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 45 H 0.05 1.33 7.63 -2.39 -0.02 1.31 16 46 H 0.15 3.28 8.14 -2.38 -0.02 3.26 16 Total: -1.00 -68.54 362.23 5.80 -62.74 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.98 Total: 14.37 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 6.34 Total: -11.39 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -4.82 Total: -102.72 kcal Atomic # 9 Polarization: -11.61 SS G_CDS: 1.28 Total: -10.33 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -68.54 5.80 -62.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274441881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.197 kcal (2) G-P(sol) polarization free energy of solvation -68.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds