Wall clock time and date at job start Tue Mar 31 2020 10:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47054 * 2 1 4 4 N 1.46504 * 109.47225 * 119.99951 * 2 1 3 5 5 C 1.35314 * 125.86662 * 275.29716 * 4 2 1 6 6 C 1.35348 * 106.17513 * 180.18042 * 5 4 2 7 7 C 1.50696 * 126.75678 * 179.84985 * 6 5 4 8 8 N 1.46896 * 109.47057 * 94.71429 * 7 6 5 9 9 C 1.46897 * 111.00136 * 71.89633 * 8 7 6 10 10 C 1.50698 * 109.46853 * 61.25477 * 9 8 7 11 11 H 1.08005 * 120.00600 * 355.23471 * 10 9 8 12 12 C 1.37876 * 120.00208 * 175.23468 * 10 9 8 13 13 N 1.31515 * 120.00057 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00494 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46983 * 89.99567 * 14 12 10 16 16 H 1.48495 * 109.47278 * 210.00212 * 14 12 10 17 17 H 1.48499 * 109.46784 * 330.00061 * 14 12 10 18 18 C 1.46910 * 111.00215 * 195.85169 * 8 7 6 19 19 C 1.50694 * 109.46993 * 169.99713 * 18 8 7 20 20 C 1.38231 * 119.61665 * 94.98187 * 19 18 8 21 21 C 1.38628 * 119.16520 * 179.78628 * 20 19 18 22 22 C 1.38677 * 118.41555 * 0.47114 * 21 20 19 23 23 C 1.38183 * 119.16409 * 359.50917 * 22 21 20 24 24 N 1.31852 * 119.62206 * 274.99904 * 19 18 8 25 25 N 1.33778 * 106.49364 * 359.59422 * 6 5 4 26 26 N 1.28628 * 108.88709 * 0.25755 * 25 6 5 27 27 H 1.08999 * 109.47485 * 300.00462 * 1 2 3 28 28 H 1.09003 * 109.47096 * 60.00131 * 1 2 3 29 29 H 1.08995 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47406 * 240.00045 * 2 1 3 31 31 H 1.09007 * 109.46980 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47466 * 299.99848 * 3 2 1 33 33 H 1.09000 * 109.47167 * 60.00217 * 3 2 1 34 34 H 1.08007 * 126.91499 * 0.04022 * 5 4 2 35 35 H 1.09003 * 109.47005 * 334.71811 * 7 6 5 36 36 H 1.09002 * 109.47587 * 214.72009 * 7 6 5 37 37 H 1.08999 * 109.47050 * 181.25003 * 9 8 7 38 38 H 1.08994 * 109.47177 * 301.25848 * 9 8 7 39 39 H 0.97003 * 120.00745 * 180.02562 * 13 12 10 40 40 H 1.09003 * 109.46415 * 50.00155 * 18 8 7 41 41 H 1.08995 * 109.46849 * 290.00630 * 18 8 7 42 42 H 1.07998 * 120.41817 * 359.97438 * 20 19 18 43 43 H 1.07995 * 120.79334 * 180.23450 * 21 20 19 44 44 H 1.07996 * 120.41559 * 179.77571 * 22 21 20 45 45 H 1.07996 * 119.61478 * 180.24892 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1872 -0.1356 2.4187 6 6 2.6555 -1.1216 3.2190 7 6 3.0062 -1.0070 4.6801 8 7 1.8553 -1.4206 5.4937 9 6 1.6553 -2.8742 5.4223 10 6 2.8743 -3.5761 5.9631 11 1 3.7434 -3.0037 6.2520 12 6 2.8801 -4.9490 6.0891 13 7 1.8221 -5.6462 5.7369 14 14 4.3914 -5.8192 6.7587 15 1 4.2836 -5.9326 8.2354 16 1 4.4856 -7.1764 6.1635 17 1 5.6065 -5.0402 6.4095 18 6 2.0086 -0.9781 6.8862 19 6 0.7160 -1.1990 7.6287 20 6 0.5382 -2.3581 8.3607 21 6 -0.6528 -2.5497 9.0438 22 6 -1.6287 -1.5684 8.9566 23 6 -1.3794 -0.4355 8.2056 24 7 -0.2324 -0.2848 7.5724 25 7 2.7405 -2.2193 2.4591 26 7 2.3558 -1.9308 1.2661 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.9902 0.8887 2.6989 35 1 3.2625 0.0267 4.9122 36 1 3.8576 -1.6507 4.9010 37 1 0.7838 -3.1506 6.0158 38 1 1.4968 -3.1686 4.3850 39 1 1.8260 -6.6122 5.8258 40 1 2.2616 0.0820 6.9046 41 1 2.8043 -1.5499 7.3635 42 1 1.3185 -3.1036 8.4024 43 1 -0.8181 -3.4436 9.6267 44 1 -2.5700 -1.6860 9.4728 45 1 -2.1328 0.3351 8.1360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289286463.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:21 Heat of formation + Delta-G solvation = 143.295648 kcal Electronic energy + Delta-G solvation = -26415.979818 eV Core-core repulsion = 22857.170844 eV Total energy + Delta-G solvation = -3558.808974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.72596 -39.65754 -36.92690 -36.13631 -32.47338 -32.16412 -31.72520 -30.89447 -30.31023 -27.66599 -27.14883 -26.42110 -24.17946 -23.57309 -22.93439 -22.20039 -20.85653 -20.33856 -19.61242 -17.10557 -16.43965 -16.00049 -15.97191 -15.71728 -15.01167 -14.88019 -14.62244 -14.51406 -14.37346 -13.65556 -13.51506 -13.28168 -12.89258 -12.81601 -12.73489 -12.54155 -12.25251 -12.16860 -11.71136 -11.56856 -11.44542 -11.26447 -10.96043 -10.82997 -10.77546 -10.65542 -10.29377 -9.97590 -9.92940 -9.62333 -9.44962 -9.30775 -8.89125 -8.63429 -8.40749 -8.28197 -7.13212 -5.90032 -3.97302 1.63852 1.83951 2.10292 2.66476 3.19831 3.33377 3.42205 3.44709 4.27929 4.31673 4.50217 4.57908 4.75093 4.84971 4.88783 5.18318 5.21162 5.27217 5.32166 5.36557 5.40096 5.41683 5.48659 5.55798 5.58406 5.64290 5.73966 5.75809 5.90213 6.00070 6.02193 6.20264 6.32317 6.38009 6.48285 6.68038 6.71127 6.79180 6.80792 7.07059 7.24239 7.36814 7.68420 8.03950 8.08420 8.31987 8.40000 8.57978 9.10462 9.16547 9.67287 11.15633 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.009663 B = 0.004913 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.025983 B = 5697.990262 C = 7771.116805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 C -0.163 4.163 4 N -0.297 5.297 5 C -0.049 4.049 6 C 0.013 3.987 7 C 0.139 3.861 8 N -0.530 5.530 9 C 0.183 3.817 10 C -0.539 4.539 11 H 0.055 0.945 12 C 0.070 3.930 13 N -0.886 5.886 14 Si 0.882 3.118 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.109 3.891 19 C 0.155 3.845 20 C -0.139 4.139 21 C -0.083 4.083 22 C -0.187 4.187 23 C 0.084 3.916 24 N -0.475 5.475 25 N -0.236 5.236 26 N -0.102 5.102 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.181 0.819 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.040 0.960 39 H 0.260 0.740 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.144 0.856 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.719 15.051 -3.931 15.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 C -0.221 4.221 4 N -0.092 5.092 5 C -0.200 4.200 6 C -0.125 4.125 7 C 0.010 3.990 8 N -0.254 5.254 9 C 0.058 3.942 10 C -0.579 4.579 11 H 0.073 0.927 12 C -0.132 4.132 13 N -0.525 5.525 14 Si 0.710 3.290 15 H -0.209 1.209 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.019 4.019 19 C 0.016 3.984 20 C -0.159 4.159 21 C -0.109 4.109 22 C -0.207 4.207 23 C -0.073 4.073 24 N -0.185 5.185 25 N -0.103 5.103 26 N -0.081 5.081 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.198 0.802 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.162 0.838 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.921 14.521 -5.445 15.996 hybrid contribution 0.945 -0.929 1.604 2.081 sum -2.976 13.592 -3.841 14.435 Atomic orbital electron populations 1.22214 0.92823 1.03872 1.03401 1.21528 0.95670 0.93427 0.85531 1.22185 1.02387 0.93669 1.03888 1.47480 1.43644 1.08589 1.09527 1.23124 1.09296 1.02061 0.85492 1.21881 1.03615 0.89219 0.97803 1.20147 0.94172 0.99609 0.85115 1.62495 1.37480 1.18750 1.06687 1.19864 0.96254 0.79645 0.98435 1.21575 1.00900 0.92176 1.43204 0.92665 1.24861 0.95515 0.97495 0.95360 1.69951 1.28516 1.06560 1.47462 0.86762 0.84076 0.79394 0.78767 1.20914 1.21297 1.19944 1.20783 0.91609 0.99702 0.89821 1.21132 0.94754 0.89542 0.92940 1.22249 0.98846 0.98308 0.96476 1.21539 0.93392 0.98334 0.97671 1.21990 1.00149 0.96168 1.02377 1.22563 0.94536 0.96413 0.93808 1.67454 1.01036 1.31626 1.18344 1.75269 1.15163 1.23906 0.95976 1.78315 1.16895 0.95826 1.17028 0.91385 0.90225 0.91252 0.87380 0.91363 0.89897 0.91092 0.80222 0.91244 0.91386 0.94984 0.94187 0.93042 0.91190 0.91997 0.83784 0.85519 0.85803 0.83733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.52 37.16 0.35 -1.16 16 2 C 0.14 1.42 3.85 -67.93 -0.26 1.16 16 3 C -0.16 -1.15 8.84 37.16 0.33 -0.83 16 4 N -0.30 -4.58 3.25 -54.76 -0.18 -4.76 16 5 C -0.05 -0.77 10.62 -17.05 -0.18 -0.95 16 6 C 0.01 0.26 6.16 -82.78 -0.51 -0.25 16 7 C 0.14 2.71 5.37 -4.98 -0.03 2.69 16 8 N -0.53 -11.39 4.65 -238.97 -1.11 -12.50 16 9 C 0.18 4.77 4.67 -4.98 -0.02 4.74 16 10 C -0.54 -14.47 7.34 -34.44 -0.25 -14.72 16 11 H 0.06 1.45 5.95 -52.48 -0.31 1.13 16 12 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 13 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 14 Si 0.88 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.11 2.11 5.10 -4.97 -0.03 2.09 16 19 C 0.15 3.01 5.64 -82.59 -0.47 2.55 16 20 C -0.14 -2.67 8.29 -39.44 -0.33 -2.99 16 21 C -0.08 -1.37 10.18 -39.28 -0.40 -1.77 16 22 C -0.19 -2.75 10.11 -39.44 -0.40 -3.14 16 23 C 0.08 1.31 11.18 -17.55 -0.20 1.12 16 24 N -0.47 -8.83 10.27 -9.48 -0.10 -8.92 16 25 N -0.24 -5.41 11.55 33.29 0.38 -5.02 16 26 N -0.10 -2.05 13.16 60.35 0.79 -1.25 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.49 7.18 -51.93 -0.37 0.11 16 34 H 0.18 2.14 7.31 -52.48 -0.38 1.75 16 35 H 0.07 1.10 7.81 -51.93 -0.41 0.69 16 36 H 0.07 1.47 6.17 -51.93 -0.32 1.15 16 37 H 0.03 0.91 6.24 -51.93 -0.32 0.58 16 38 H 0.04 1.19 6.77 -51.93 -0.35 0.84 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.07 1.19 7.86 -51.93 -0.41 0.79 16 41 H 0.06 1.24 6.47 -51.93 -0.34 0.90 16 42 H 0.14 2.99 8.06 -52.49 -0.42 2.57 16 43 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 45 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 370.52 15.07 5.58 5.58 Total: -1.00 -34.31 370.52 -7.97 -42.28 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.58 Total: 3.29 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -2.48 Total: -9.60 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.53 Total: -58.07 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.31 -7.97 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289286463.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.576 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds